Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0878

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0876 and EX28DRAFT_0877 are separated by 109 nucleotidesEX28DRAFT_0877 and EX28DRAFT_0878 are separated by 110 nucleotidesEX28DRAFT_0878 and EX28DRAFT_0879 are separated by 96 nucleotidesEX28DRAFT_0879 and EX28DRAFT_0880 are separated by 120 nucleotidesEX28DRAFT_0880 and EX28DRAFT_0881 are separated by 41 nucleotides EX28DRAFT_0876: EX28DRAFT_0876 - hypothetical protein, at 889,267 to 889,440 _0876 EX28DRAFT_0877: EX28DRAFT_0877 - Putative threonine efflux protein, at 889,550 to 890,185 _0877 EX28DRAFT_0878: EX28DRAFT_0878 - Site-specific recombinase XerD, at 890,296 to 891,306 _0878 EX28DRAFT_0879: EX28DRAFT_0879 - Helix-turn-helix, at 891,403 to 891,702 _0879 EX28DRAFT_0880: EX28DRAFT_0880 - Regulatory phage protein cox, at 891,823 to 892,101 _0880 EX28DRAFT_0881: EX28DRAFT_0881 - hypothetical protein, at 892,143 to 892,382 _0881 Position (kb) 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 889.368 kb on + strand, within EX28DRAFT_0876at 889.435 kb on - strandat 889.477 kb on + strandat 889.478 kb on - strandat 889.505 kb on + strandat 889.505 kb on + strandat 889.506 kb on - strandat 889.518 kb on - strandat 889.532 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.586 kb on + strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.587 kb on - strandat 889.679 kb on + strand, within EX28DRAFT_0877at 889.680 kb on - strand, within EX28DRAFT_0877at 889.698 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.777 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.805 kb on + strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.806 kb on - strand, within EX28DRAFT_0877at 889.892 kb on - strand, within EX28DRAFT_0877at 889.917 kb on + strand, within EX28DRAFT_0877at 889.949 kb on + strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.950 kb on - strand, within EX28DRAFT_0877at 889.953 kb on + strand, within EX28DRAFT_0877at 889.954 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.035 kb on - strand, within EX28DRAFT_0877at 890.037 kb on + strand, within EX28DRAFT_0877at 890.038 kb on - strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.044 kb on + strand, within EX28DRAFT_0877at 890.045 kb on - strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.048 kb on + strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.049 kb on - strand, within EX28DRAFT_0877at 890.178 kb on + strandat 890.265 kb on - strandat 890.267 kb on + strandat 890.396 kb on + strandat 890.396 kb on + strandat 890.397 kb on - strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.428 kb on + strand, within EX28DRAFT_0878at 890.429 kb on - strand, within EX28DRAFT_0878at 890.470 kb on - strand, within EX28DRAFT_0878at 890.470 kb on - strand, within EX28DRAFT_0878at 890.564 kb on + strand, within EX28DRAFT_0878at 890.565 kb on - strand, within EX28DRAFT_0878at 890.606 kb on - strand, within EX28DRAFT_0878at 890.606 kb on - strand, within EX28DRAFT_0878at 890.609 kb on + strand, within EX28DRAFT_0878at 890.788 kb on + strand, within EX28DRAFT_0878at 890.789 kb on - strand, within EX28DRAFT_0878at 890.789 kb on - strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.879 kb on + strand, within EX28DRAFT_0878at 890.880 kb on - strand, within EX28DRAFT_0878at 890.955 kb on + strand, within EX28DRAFT_0878at 890.955 kb on + strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.956 kb on - strand, within EX28DRAFT_0878at 890.981 kb on + strand, within EX28DRAFT_0878at 891.106 kb on + strand, within EX28DRAFT_0878at 891.106 kb on + strand, within EX28DRAFT_0878at 891.107 kb on - strand, within EX28DRAFT_0878at 891.174 kb on + strand, within EX28DRAFT_0878at 891.174 kb on + strand, within EX28DRAFT_0878at 891.175 kb on - strand, within EX28DRAFT_0878at 891.177 kb on - strand, within EX28DRAFT_0878at 891.177 kb on - strand, within EX28DRAFT_0878at 891.183 kb on + strand, within EX28DRAFT_0878at 891.261 kb on + strandat 891.262 kb on - strandat 891.276 kb on - strandat 891.297 kb on + strandat 891.306 kb on + strandat 891.307 kb on - strandat 891.307 kb on - strandat 891.326 kb on - strandat 891.396 kb on + strandat 891.786 kb on - strandat 891.796 kb on - strandat 891.817 kb on + strandat 891.839 kb on + strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.840 kb on - strandat 891.843 kb on + strandat 891.843 kb on + strandat 891.882 kb on + strand, within EX28DRAFT_0880at 891.888 kb on + strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.889 kb on - strand, within EX28DRAFT_0880at 891.985 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 891.994 kb on + strand, within EX28DRAFT_0880at 892.030 kb on + strand, within EX28DRAFT_0880at 892.178 kb on + strand, within EX28DRAFT_0881at 892.179 kb on - strand, within EX28DRAFT_0881at 892.190 kb on + strand, within EX28DRAFT_0881

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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889,368 + EX28DRAFT_0876 0.58 +0.2
889,435 - +0.4
889,477 + +0.8
889,478 - +0.5
889,505 + +0.9
889,505 + +0.4
889,506 - -0.2
889,518 - +0.5
889,532 + +0.7
889,586 + -0.8
889,586 + -0.0
889,586 + +0.3
889,586 + -0.4
889,586 + +2.3
889,586 + +0.4
889,587 - +0.9
889,587 - -2.4
889,587 - -0.6
889,587 - -0.8
889,587 - -0.8
889,587 - +0.6
889,679 + EX28DRAFT_0877 0.20 +2.9
889,680 - EX28DRAFT_0877 0.20 -1.0
889,698 + EX28DRAFT_0877 0.23 +0.5
889,777 + EX28DRAFT_0877 0.36 +1.3
889,777 + EX28DRAFT_0877 0.36 -0.1
889,777 + EX28DRAFT_0877 0.36 +0.3
889,805 + EX28DRAFT_0877 0.40 -0.4
889,805 + EX28DRAFT_0877 0.40 -1.9
889,806 - EX28DRAFT_0877 0.40 +0.2
889,806 - EX28DRAFT_0877 0.40 +0.4
889,892 - EX28DRAFT_0877 0.54 -0.1
889,917 + EX28DRAFT_0877 0.58 +1.2
889,949 + EX28DRAFT_0877 0.63 +0.8
889,950 - EX28DRAFT_0877 0.63 +1.1
889,950 - EX28DRAFT_0877 0.63 +0.9
889,950 - EX28DRAFT_0877 0.63 -1.1
889,953 + EX28DRAFT_0877 0.63 +0.6
889,954 - EX28DRAFT_0877 0.64 +0.1
890,035 - EX28DRAFT_0877 0.76 +0.0
890,035 - EX28DRAFT_0877 0.76 +0.4
890,037 + EX28DRAFT_0877 0.77 -0.1
890,038 - EX28DRAFT_0877 0.77 -0.5
890,044 + EX28DRAFT_0877 0.78 -0.5
890,044 + EX28DRAFT_0877 0.78 +0.4
890,044 + EX28DRAFT_0877 0.78 +0.1
890,045 - EX28DRAFT_0877 0.78 +1.5
890,048 + EX28DRAFT_0877 0.78 -1.2
890,048 + EX28DRAFT_0877 0.78 +0.5
890,048 + EX28DRAFT_0877 0.78 +1.1
890,048 + EX28DRAFT_0877 0.78 +0.3
890,048 + EX28DRAFT_0877 0.78 -0.5
890,049 - EX28DRAFT_0877 0.78 -0.1
890,049 - EX28DRAFT_0877 0.78 -0.2
890,049 - EX28DRAFT_0877 0.78 -0.7
890,049 - EX28DRAFT_0877 0.78 -1.4
890,049 - EX28DRAFT_0877 0.78 -1.1
890,178 + -0.0
890,265 - -0.3
890,267 + -2.0
890,396 + +1.7
890,396 + +0.6
890,397 - EX28DRAFT_0878 0.10 +0.1
890,428 + EX28DRAFT_0878 0.13 +0.4
890,428 + EX28DRAFT_0878 0.13 -0.8
890,428 + EX28DRAFT_0878 0.13 -2.9
890,429 - EX28DRAFT_0878 0.13 -1.1
890,470 - EX28DRAFT_0878 0.17 -1.0
890,470 - EX28DRAFT_0878 0.17 +0.9
890,564 + EX28DRAFT_0878 0.27 -0.1
890,565 - EX28DRAFT_0878 0.27 -0.2
890,606 - EX28DRAFT_0878 0.31 +2.2
890,606 - EX28DRAFT_0878 0.31 +1.0
890,609 + EX28DRAFT_0878 0.31 -0.4
890,788 + EX28DRAFT_0878 0.49 +0.2
890,789 - EX28DRAFT_0878 0.49 -0.5
890,789 - EX28DRAFT_0878 0.49 +0.1
890,879 + EX28DRAFT_0878 0.58 -0.7
890,879 + EX28DRAFT_0878 0.58 +1.2
890,879 + EX28DRAFT_0878 0.58 -0.8
890,879 + EX28DRAFT_0878 0.58 +4.7
890,880 - EX28DRAFT_0878 0.58 +0.2
890,955 + EX28DRAFT_0878 0.65 +2.5
890,955 + EX28DRAFT_0878 0.65 -0.5
890,956 - EX28DRAFT_0878 0.65 -0.5
890,956 - EX28DRAFT_0878 0.65 -1.1
890,956 - EX28DRAFT_0878 0.65 +0.8
890,981 + EX28DRAFT_0878 0.68 -1.9
891,106 + EX28DRAFT_0878 0.80 -0.8
891,106 + EX28DRAFT_0878 0.80 +0.1
891,107 - EX28DRAFT_0878 0.80 -0.3
891,174 + EX28DRAFT_0878 0.87 -0.3
891,174 + EX28DRAFT_0878 0.87 -0.1
891,175 - EX28DRAFT_0878 0.87 -2.4
891,177 - EX28DRAFT_0878 0.87 +0.1
891,177 - EX28DRAFT_0878 0.87 +0.4
891,183 + EX28DRAFT_0878 0.88 -0.3
891,261 + -0.2
891,262 - +0.9
891,276 - -0.3
891,297 + +0.1
891,306 + +1.1
891,307 - +0.9
891,307 - -0.7
891,326 - +0.5
891,396 + -0.1
891,786 - +2.9
891,796 - -1.0
891,817 + +0.3
891,839 + +0.3
891,840 - +0.2
891,840 - -0.4
891,840 - -1.1
891,840 - -0.1
891,840 - +0.2
891,840 - +0.5
891,843 + +0.6
891,843 + +0.3
891,882 + EX28DRAFT_0880 0.21 +0.5
891,888 + EX28DRAFT_0880 0.23 -1.4
891,889 - EX28DRAFT_0880 0.24 +0.2
891,889 - EX28DRAFT_0880 0.24 -0.5
891,985 + EX28DRAFT_0880 0.58 +0.7
891,994 + EX28DRAFT_0880 0.61 +0.7
891,994 + EX28DRAFT_0880 0.61 -0.7
892,030 + EX28DRAFT_0880 0.74 +1.3
892,178 + EX28DRAFT_0881 0.15 -0.0
892,179 - EX28DRAFT_0881 0.15 +0.3
892,190 + EX28DRAFT_0881 0.20 +0.2

Or see this region's nucleotide sequence