Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0872 and EX28DRAFT_0873 are separated by 14 nucleotides EX28DRAFT_0873 and EX28DRAFT_0874 are separated by 31 nucleotides EX28DRAFT_0874 and EX28DRAFT_0875 are separated by 33 nucleotides
EX28DRAFT_0872: EX28DRAFT_0872 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 885,379 to 886,383
_0872
EX28DRAFT_0873: EX28DRAFT_0873 - Kef-type K+ transport systems, predicted NAD-binding component, at 886,398 to 887,267
_0873
EX28DRAFT_0874: EX28DRAFT_0874 - Uncharacterized protein conserved in bacteria, at 887,299 to 887,628
_0874
EX28DRAFT_0875: EX28DRAFT_0875 - cardiolipin synthase, at 887,662 to 889,122
_0875
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 885.730 kb on - strand, within EX28DRAFT_0872 at 885.730 kb on - strand, within EX28DRAFT_0872 at 885.769 kb on + strand, within EX28DRAFT_0872 at 885.895 kb on - strand, within EX28DRAFT_0872 at 885.895 kb on - strand, within EX28DRAFT_0872 at 885.901 kb on - strand, within EX28DRAFT_0872 at 886.093 kb on + strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.094 kb on - strand, within EX28DRAFT_0872 at 886.123 kb on + strand, within EX28DRAFT_0872 at 886.123 kb on + strand, within EX28DRAFT_0872 at 886.136 kb on - strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.140 kb on + strand, within EX28DRAFT_0872 at 886.213 kb on - strand, within EX28DRAFT_0872 at 886.314 kb on + strand at 886.380 kb on - strand at 886.380 kb on - strand at 886.466 kb on - strand at 886.585 kb on - strand, within EX28DRAFT_0873 at 886.585 kb on - strand, within EX28DRAFT_0873 at 886.611 kb on - strand, within EX28DRAFT_0873 at 886.675 kb on + strand, within EX28DRAFT_0873 at 886.675 kb on + strand, within EX28DRAFT_0873 at 886.698 kb on + strand, within EX28DRAFT_0873 at 886.749 kb on + strand, within EX28DRAFT_0873 at 886.749 kb on + strand, within EX28DRAFT_0873 at 886.750 kb on - strand, within EX28DRAFT_0873 at 886.750 kb on - strand, within EX28DRAFT_0873 at 886.750 kb on - strand, within EX28DRAFT_0873 at 886.785 kb on + strand, within EX28DRAFT_0873 at 886.785 kb on + strand, within EX28DRAFT_0873 at 886.785 kb on + strand, within EX28DRAFT_0873 at 886.785 kb on + strand, within EX28DRAFT_0873 at 886.786 kb on - strand, within EX28DRAFT_0873 at 886.825 kb on + strand, within EX28DRAFT_0873 at 886.825 kb on + strand, within EX28DRAFT_0873 at 886.830 kb on - strand, within EX28DRAFT_0873 at 886.830 kb on - strand, within EX28DRAFT_0873 at 886.862 kb on - strand, within EX28DRAFT_0873 at 886.923 kb on - strand, within EX28DRAFT_0873 at 886.959 kb on + strand, within EX28DRAFT_0873 at 886.960 kb on - strand, within EX28DRAFT_0873 at 886.964 kb on - strand, within EX28DRAFT_0873 at 886.964 kb on - strand, within EX28DRAFT_0873 at 886.966 kb on + strand, within EX28DRAFT_0873 at 886.967 kb on - strand, within EX28DRAFT_0873 at 886.967 kb on - strand, within EX28DRAFT_0873 at 887.064 kb on - strand, within EX28DRAFT_0873 at 887.139 kb on - strand, within EX28DRAFT_0873 at 887.139 kb on - strand, within EX28DRAFT_0873 at 887.368 kb on - strand, within EX28DRAFT_0874 at 887.515 kb on - strand, within EX28DRAFT_0874 at 887.574 kb on - strand, within EX28DRAFT_0874 at 887.643 kb on + strand at 887.763 kb on + strand at 887.764 kb on - strand at 887.765 kb on + strand at 887.765 kb on + strand at 887.765 kb on + strand at 887.765 kb on + strand at 887.765 kb on + strand at 887.766 kb on - strand at 887.766 kb on - strand at 887.766 kb on - strand at 887.766 kb on - strand at 888.096 kb on - strand, within EX28DRAFT_0875 at 888.096 kb on - strand, within EX28DRAFT_0875 at 888.131 kb on + strand, within EX28DRAFT_0875 at 888.160 kb on + strand, within EX28DRAFT_0875 at 888.195 kb on + strand, within EX28DRAFT_0875 at 888.195 kb on + strand, within EX28DRAFT_0875 at 888.205 kb on - strand, within EX28DRAFT_0875 at 888.231 kb on + strand, within EX28DRAFT_0875 at 888.231 kb on + strand, within EX28DRAFT_0875 at 888.231 kb on + strand, within EX28DRAFT_0875 at 888.235 kb on - strand, within EX28DRAFT_0875 at 888.235 kb on - strand, within EX28DRAFT_0875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 885,730 - EX28DRAFT_0872 0.35 -0.5 885,730 - EX28DRAFT_0872 0.35 +2.4 885,769 + EX28DRAFT_0872 0.39 +0.6 885,895 - EX28DRAFT_0872 0.51 +0.6 885,895 - EX28DRAFT_0872 0.51 -0.6 885,901 - EX28DRAFT_0872 0.52 +1.1 886,093 + EX28DRAFT_0872 0.71 -0.2 886,094 - EX28DRAFT_0872 0.71 +0.0 886,094 - EX28DRAFT_0872 0.71 +0.6 886,094 - EX28DRAFT_0872 0.71 -1.0 886,094 - EX28DRAFT_0872 0.71 -3.5 886,123 + EX28DRAFT_0872 0.74 -0.0 886,123 + EX28DRAFT_0872 0.74 -0.1 886,136 - EX28DRAFT_0872 0.75 -2.1 886,140 + EX28DRAFT_0872 0.76 -0.1 886,140 + EX28DRAFT_0872 0.76 +0.3 886,140 + EX28DRAFT_0872 0.76 -0.6 886,213 - EX28DRAFT_0872 0.83 -1.1 886,314 + -0.0 886,380 - +0.3 886,380 - -0.5 886,466 - +2.5 886,585 - EX28DRAFT_0873 0.21 -1.2 886,585 - EX28DRAFT_0873 0.21 +0.1 886,611 - EX28DRAFT_0873 0.24 +0.6 886,675 + EX28DRAFT_0873 0.32 -0.4 886,675 + EX28DRAFT_0873 0.32 +0.3 886,698 + EX28DRAFT_0873 0.34 -0.4 886,749 + EX28DRAFT_0873 0.40 -0.7 886,749 + EX28DRAFT_0873 0.40 -0.3 886,750 - EX28DRAFT_0873 0.40 +0.9 886,750 - EX28DRAFT_0873 0.40 +0.3 886,750 - EX28DRAFT_0873 0.40 +0.1 886,785 + EX28DRAFT_0873 0.44 -0.0 886,785 + EX28DRAFT_0873 0.44 +0.2 886,785 + EX28DRAFT_0873 0.44 -0.2 886,785 + EX28DRAFT_0873 0.44 +0.4 886,786 - EX28DRAFT_0873 0.45 +0.2 886,825 + EX28DRAFT_0873 0.49 +1.2 886,825 + EX28DRAFT_0873 0.49 -0.8 886,830 - EX28DRAFT_0873 0.50 +1.2 886,830 - EX28DRAFT_0873 0.50 -1.3 886,862 - EX28DRAFT_0873 0.53 -0.2 886,923 - EX28DRAFT_0873 0.60 -1.2 886,959 + EX28DRAFT_0873 0.64 +1.0 886,960 - EX28DRAFT_0873 0.65 -0.7 886,964 - EX28DRAFT_0873 0.65 -1.1 886,964 - EX28DRAFT_0873 0.65 -1.1 886,966 + EX28DRAFT_0873 0.65 -0.2 886,967 - EX28DRAFT_0873 0.65 +4.5 886,967 - EX28DRAFT_0873 0.65 -0.8 887,064 - EX28DRAFT_0873 0.77 +0.4 887,139 - EX28DRAFT_0873 0.85 +0.1 887,139 - EX28DRAFT_0873 0.85 -1.5 887,368 - EX28DRAFT_0874 0.21 -2.1 887,515 - EX28DRAFT_0874 0.65 -1.0 887,574 - EX28DRAFT_0874 0.83 +0.8 887,643 + +0.3 887,763 + -0.4 887,764 - -1.0 887,765 + -1.0 887,765 + -0.1 887,765 + -1.1 887,765 + +1.1 887,765 + +0.7 887,766 - -0.3 887,766 - -1.2 887,766 - -0.2 887,766 - -0.7 888,096 - EX28DRAFT_0875 0.30 +1.2 888,096 - EX28DRAFT_0875 0.30 +0.9 888,131 + EX28DRAFT_0875 0.32 +2.0 888,160 + EX28DRAFT_0875 0.34 -0.5 888,195 + EX28DRAFT_0875 0.36 -0.9 888,195 + EX28DRAFT_0875 0.36 -0.5 888,205 - EX28DRAFT_0875 0.37 -0.8 888,231 + EX28DRAFT_0875 0.39 +2.9 888,231 + EX28DRAFT_0875 0.39 -0.1 888,231 + EX28DRAFT_0875 0.39 -0.2 888,235 - EX28DRAFT_0875 0.39 -1.7 888,235 - EX28DRAFT_0875 0.39 +0.1
Or see this region's nucleotide sequence