Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0849 and EX28DRAFT_0850 are separated by 309 nucleotides EX28DRAFT_0850 and EX28DRAFT_0851 are separated by 381 nucleotides
EX28DRAFT_0849: EX28DRAFT_0849 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 856,918 to 858,714
_0849
EX28DRAFT_0850: EX28DRAFT_0850 - nitrite extrusion protein (nitrite facilitator), at 859,024 to 860,421
_0850
EX28DRAFT_0851: EX28DRAFT_0851 - respiratory nitrate reductase, alpha subunit, at 860,803 to 864,546
_0851
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 858.229 kb on - strand, within EX28DRAFT_0849 at 858.282 kb on + strand, within EX28DRAFT_0849 at 858.417 kb on + strand, within EX28DRAFT_0849 at 858.596 kb on - strand at 858.605 kb on - strand at 858.697 kb on + strand at 858.698 kb on - strand at 858.714 kb on + strand at 858.714 kb on + strand at 858.715 kb on - strand at 858.781 kb on + strand at 858.782 kb on - strand at 858.783 kb on + strand at 858.846 kb on - strand at 858.980 kb on - strand at 858.988 kb on - strand at 859.023 kb on + strand at 859.024 kb on - strand at 859.121 kb on + strand at 859.121 kb on + strand at 859.136 kb on + strand at 859.224 kb on + strand, within EX28DRAFT_0850 at 859.306 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.405 kb on - strand, within EX28DRAFT_0850 at 859.429 kb on - strand, within EX28DRAFT_0850 at 859.548 kb on + strand, within EX28DRAFT_0850 at 859.549 kb on - strand, within EX28DRAFT_0850 at 859.722 kb on + strand, within EX28DRAFT_0850 at 859.723 kb on - strand, within EX28DRAFT_0850 at 859.723 kb on - strand, within EX28DRAFT_0850 at 859.810 kb on + strand, within EX28DRAFT_0850 at 860.360 kb on - strand at 860.360 kb on - strand at 860.379 kb on + strand at 860.379 kb on + strand at 860.390 kb on + strand at 860.391 kb on - strand at 860.391 kb on - strand at 860.415 kb on + strand at 860.419 kb on + strand at 860.419 kb on + strand at 860.564 kb on - strand at 860.650 kb on + strand at 860.769 kb on + strand at 860.830 kb on + strand at 860.831 kb on - strand at 860.976 kb on + strand at 861.134 kb on - strand at 861.328 kb on + strand, within EX28DRAFT_0851 at 861.329 kb on - strand, within EX28DRAFT_0851 at 861.343 kb on + strand, within EX28DRAFT_0851 at 861.344 kb on - strand, within EX28DRAFT_0851
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 858,229 - EX28DRAFT_0849 0.73 -0.7 858,282 + EX28DRAFT_0849 0.76 +0.2 858,417 + EX28DRAFT_0849 0.83 -0.3 858,596 - +1.6 858,605 - +0.5 858,697 + +1.6 858,698 - -0.7 858,714 + +0.5 858,714 + +1.0 858,715 - +0.5 858,781 + -2.2 858,782 - -1.6 858,783 + -1.8 858,846 - +1.3 858,980 - +1.5 858,988 - -0.6 859,023 + +0.8 859,024 - +0.7 859,121 + +0.6 859,121 + +0.2 859,136 + +0.3 859,224 + EX28DRAFT_0850 0.14 +1.2 859,306 - EX28DRAFT_0850 0.20 -0.1 859,405 - EX28DRAFT_0850 0.27 +0.7 859,405 - EX28DRAFT_0850 0.27 +0.6 859,429 - EX28DRAFT_0850 0.29 +1.0 859,548 + EX28DRAFT_0850 0.37 +2.4 859,549 - EX28DRAFT_0850 0.38 +0.4 859,722 + EX28DRAFT_0850 0.50 +0.9 859,723 - EX28DRAFT_0850 0.50 +0.7 859,723 - EX28DRAFT_0850 0.50 +0.4 859,810 + EX28DRAFT_0850 0.56 +2.8 860,360 - +1.7 860,360 - +0.7 860,379 + +1.0 860,379 + +1.7 860,390 + +0.4 860,391 - +0.7 860,391 - +0.1 860,415 + +2.5 860,419 + +0.1 860,419 + +1.0 860,564 - +0.6 860,650 + +2.3 860,769 + -0.0 860,830 + +0.2 860,831 - +0.1 860,976 + -0.3 861,134 - -0.5 861,328 + EX28DRAFT_0851 0.14 -1.0 861,329 - EX28DRAFT_0851 0.14 -1.3 861,343 + EX28DRAFT_0851 0.14 +0.6 861,344 - EX28DRAFT_0851 0.14 +1.0
Or see this region's nucleotide sequence