Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0842

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0841 and EX28DRAFT_0842 are separated by 228 nucleotidesEX28DRAFT_0842 and EX28DRAFT_0843 are separated by 2 nucleotidesEX28DRAFT_0843 and EX28DRAFT_0844 are separated by 9 nucleotides EX28DRAFT_0841: EX28DRAFT_0841 - ANTAR domain/Nitrate and nitrite sensing, at 843,956 to 845,140 _0841 EX28DRAFT_0842: EX28DRAFT_0842 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 845,369 to 846,616 _0842 EX28DRAFT_0843: EX28DRAFT_0843 - nitrate ABC transporter, permease protein, at 846,619 to 847,497 _0843 EX28DRAFT_0844: EX28DRAFT_0844 - nitrate transport ATP-binding subunits C and D, at 847,507 to 848,295 _0844 Position (kb) 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 844.807 kb on + strand, within EX28DRAFT_0841at 844.807 kb on + strand, within EX28DRAFT_0841at 844.807 kb on + strand, within EX28DRAFT_0841at 844.807 kb on + strand, within EX28DRAFT_0841at 844.811 kb on + strand, within EX28DRAFT_0841at 844.812 kb on - strand, within EX28DRAFT_0841at 844.812 kb on - strand, within EX28DRAFT_0841at 844.826 kb on + strand, within EX28DRAFT_0841at 844.827 kb on - strand, within EX28DRAFT_0841at 844.863 kb on + strand, within EX28DRAFT_0841at 844.864 kb on - strand, within EX28DRAFT_0841at 844.864 kb on - strand, within EX28DRAFT_0841at 844.868 kb on + strand, within EX28DRAFT_0841at 844.917 kb on + strand, within EX28DRAFT_0841at 844.981 kb on + strand, within EX28DRAFT_0841at 845.015 kb on - strand, within EX28DRAFT_0841at 845.124 kb on + strandat 845.138 kb on + strandat 845.139 kb on - strandat 845.139 kb on - strandat 845.196 kb on + strandat 845.196 kb on + strandat 845.567 kb on + strand, within EX28DRAFT_0842at 845.568 kb on - strand, within EX28DRAFT_0842at 845.568 kb on - strand, within EX28DRAFT_0842at 845.575 kb on + strand, within EX28DRAFT_0842at 845.837 kb on + strand, within EX28DRAFT_0842at 845.838 kb on - strand, within EX28DRAFT_0842at 845.885 kb on + strand, within EX28DRAFT_0842at 845.885 kb on + strand, within EX28DRAFT_0842at 845.888 kb on + strand, within EX28DRAFT_0842at 845.889 kb on - strand, within EX28DRAFT_0842at 846.068 kb on - strand, within EX28DRAFT_0842at 846.068 kb on - strand, within EX28DRAFT_0842at 846.257 kb on + strand, within EX28DRAFT_0842at 846.258 kb on - strand, within EX28DRAFT_0842at 846.258 kb on - strand, within EX28DRAFT_0842at 846.363 kb on - strand, within EX28DRAFT_0842at 846.376 kb on + strand, within EX28DRAFT_0842at 846.619 kb on - strandat 846.929 kb on + strand, within EX28DRAFT_0843at 847.043 kb on + strand, within EX28DRAFT_0843at 847.088 kb on + strand, within EX28DRAFT_0843at 847.172 kb on + strand, within EX28DRAFT_0843at 847.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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844,807 + EX28DRAFT_0841 0.72 -0.1
844,807 + EX28DRAFT_0841 0.72 +2.3
844,807 + EX28DRAFT_0841 0.72 -1.7
844,807 + EX28DRAFT_0841 0.72 -3.9
844,811 + EX28DRAFT_0841 0.72 +0.4
844,812 - EX28DRAFT_0841 0.72 +1.2
844,812 - EX28DRAFT_0841 0.72 +0.8
844,826 + EX28DRAFT_0841 0.73 +0.6
844,827 - EX28DRAFT_0841 0.74 -0.4
844,863 + EX28DRAFT_0841 0.77 -0.1
844,864 - EX28DRAFT_0841 0.77 +0.7
844,864 - EX28DRAFT_0841 0.77 +0.1
844,868 + EX28DRAFT_0841 0.77 -0.7
844,917 + EX28DRAFT_0841 0.81 +0.2
844,981 + EX28DRAFT_0841 0.86 +0.7
845,015 - EX28DRAFT_0841 0.89 -0.2
845,124 + +0.4
845,138 + +0.7
845,139 - +0.9
845,139 - -0.6
845,196 + +0.2
845,196 + -1.9
845,567 + EX28DRAFT_0842 0.16 -0.3
845,568 - EX28DRAFT_0842 0.16 -1.4
845,568 - EX28DRAFT_0842 0.16 -0.5
845,575 + EX28DRAFT_0842 0.17 -0.0
845,837 + EX28DRAFT_0842 0.38 +0.4
845,838 - EX28DRAFT_0842 0.38 -0.1
845,885 + EX28DRAFT_0842 0.41 +0.4
845,885 + EX28DRAFT_0842 0.41 +0.7
845,888 + EX28DRAFT_0842 0.42 -0.3
845,889 - EX28DRAFT_0842 0.42 +0.1
846,068 - EX28DRAFT_0842 0.56 -1.4
846,068 - EX28DRAFT_0842 0.56 +0.1
846,257 + EX28DRAFT_0842 0.71 +0.7
846,258 - EX28DRAFT_0842 0.71 +1.1
846,258 - EX28DRAFT_0842 0.71 +0.0
846,363 - EX28DRAFT_0842 0.80 -1.1
846,376 + EX28DRAFT_0842 0.81 -0.2
846,619 - +0.3
846,929 + EX28DRAFT_0843 0.35 -0.4
847,043 + EX28DRAFT_0843 0.48 +0.2
847,088 + EX28DRAFT_0843 0.53 -0.3
847,172 + EX28DRAFT_0843 0.63 -1.7
847,479 + +0.5

Or see this region's nucleotide sequence