Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0747 and EX28DRAFT_0748 are separated by 52 nucleotides EX28DRAFT_0748 and EX28DRAFT_0749 are separated by 6 nucleotides EX28DRAFT_0749 and EX28DRAFT_0750 are separated by 133 nucleotides
EX28DRAFT_0747: EX28DRAFT_0747 - aminodeoxychorismate synthase, component I, bacterial clade, at 745,438 to 746,772
_0747
EX28DRAFT_0748: EX28DRAFT_0748 - Uncharacterized protein conserved in bacteria, at 746,825 to 747,016
_0748
EX28DRAFT_0749: EX28DRAFT_0749 - Putative translation initiation inhibitor, yjgF family, at 747,023 to 747,367
_0749
EX28DRAFT_0750: EX28DRAFT_0750 - Rad3-related DNA helicases, at 747,501 to 749,411
_0750
Position (kb) 747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 746.033 kb on - strand, within EX28DRAFT_0747 at 746.041 kb on + strand, within EX28DRAFT_0747 at 746.041 kb on + strand, within EX28DRAFT_0747 at 746.043 kb on + strand, within EX28DRAFT_0747 at 746.043 kb on + strand, within EX28DRAFT_0747 at 746.085 kb on + strand, within EX28DRAFT_0747 at 746.085 kb on + strand, within EX28DRAFT_0747 at 746.132 kb on + strand, within EX28DRAFT_0747 at 746.189 kb on + strand, within EX28DRAFT_0747 at 746.190 kb on - strand, within EX28DRAFT_0747 at 746.219 kb on + strand, within EX28DRAFT_0747 at 746.220 kb on - strand, within EX28DRAFT_0747 at 746.220 kb on - strand, within EX28DRAFT_0747 at 746.382 kb on - strand, within EX28DRAFT_0747 at 746.382 kb on - strand, within EX28DRAFT_0747 at 746.382 kb on - strand, within EX28DRAFT_0747 at 746.412 kb on + strand, within EX28DRAFT_0747 at 746.412 kb on + strand, within EX28DRAFT_0747 at 746.636 kb on + strand, within EX28DRAFT_0747 at 746.676 kb on - strand at 746.736 kb on + strand at 746.736 kb on + strand at 746.737 kb on - strand at 746.739 kb on + strand at 746.739 kb on + strand at 746.739 kb on + strand at 746.740 kb on - strand at 746.772 kb on + strand at 746.773 kb on - strand at 746.773 kb on - strand at 746.773 kb on - strand at 746.773 kb on - strand at 746.773 kb on - strand at 746.773 kb on - strand at 746.838 kb on + strand at 746.839 kb on - strand at 747.014 kb on + strand at 747.015 kb on - strand at 747.055 kb on + strand at 747.055 kb on + strand at 747.056 kb on - strand at 747.323 kb on + strand, within EX28DRAFT_0749 at 747.323 kb on + strand, within EX28DRAFT_0749 at 747.367 kb on + strand at 747.413 kb on + strand at 747.414 kb on - strand at 747.532 kb on + strand at 747.657 kb on + strand at 747.664 kb on - strand at 747.664 kb on - strand at 747.702 kb on - strand, within EX28DRAFT_0750 at 747.739 kb on - strand, within EX28DRAFT_0750 at 747.812 kb on + strand, within EX28DRAFT_0750 at 747.812 kb on + strand, within EX28DRAFT_0750 at 747.812 kb on + strand, within EX28DRAFT_0750 at 747.816 kb on + strand, within EX28DRAFT_0750 at 747.817 kb on - strand, within EX28DRAFT_0750 at 747.817 kb on - strand, within EX28DRAFT_0750 at 748.026 kb on + strand, within EX28DRAFT_0750 at 748.027 kb on - strand, within EX28DRAFT_0750 at 748.027 kb on - strand, within EX28DRAFT_0750 at 748.029 kb on - strand, within EX28DRAFT_0750 at 748.293 kb on - strand, within EX28DRAFT_0750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 746,033 - EX28DRAFT_0747 0.45 -1.4 746,041 + EX28DRAFT_0747 0.45 +0.9 746,041 + EX28DRAFT_0747 0.45 +0.0 746,043 + EX28DRAFT_0747 0.45 +0.2 746,043 + EX28DRAFT_0747 0.45 -0.8 746,085 + EX28DRAFT_0747 0.48 -0.9 746,085 + EX28DRAFT_0747 0.48 +0.6 746,132 + EX28DRAFT_0747 0.52 +1.5 746,189 + EX28DRAFT_0747 0.56 -0.0 746,190 - EX28DRAFT_0747 0.56 -0.8 746,219 + EX28DRAFT_0747 0.59 +0.2 746,220 - EX28DRAFT_0747 0.59 +0.4 746,220 - EX28DRAFT_0747 0.59 +0.4 746,382 - EX28DRAFT_0747 0.71 -0.4 746,382 - EX28DRAFT_0747 0.71 +0.5 746,382 - EX28DRAFT_0747 0.71 -0.5 746,412 + EX28DRAFT_0747 0.73 +2.5 746,412 + EX28DRAFT_0747 0.73 +0.1 746,636 + EX28DRAFT_0747 0.90 -0.5 746,676 - -0.2 746,736 + -1.3 746,736 + +0.4 746,737 - +0.2 746,739 + +1.2 746,739 + +0.2 746,739 + -0.4 746,740 - -0.2 746,772 + -0.6 746,773 - -1.1 746,773 - +0.6 746,773 - -2.2 746,773 - -0.4 746,773 - -0.1 746,773 - -1.6 746,838 + +0.2 746,839 - -0.2 747,014 + +1.1 747,015 - +0.5 747,055 + +0.2 747,055 + +0.1 747,056 - +2.9 747,323 + EX28DRAFT_0749 0.87 +2.1 747,323 + EX28DRAFT_0749 0.87 +0.2 747,367 + -2.9 747,413 + +0.8 747,414 - -0.1 747,532 + +0.4 747,657 + -0.0 747,664 - -0.9 747,664 - -0.7 747,702 - EX28DRAFT_0750 0.11 +0.1 747,739 - EX28DRAFT_0750 0.12 +0.3 747,812 + EX28DRAFT_0750 0.16 +0.1 747,812 + EX28DRAFT_0750 0.16 -0.4 747,812 + EX28DRAFT_0750 0.16 -0.4 747,816 + EX28DRAFT_0750 0.16 +1.1 747,817 - EX28DRAFT_0750 0.17 +0.8 747,817 - EX28DRAFT_0750 0.17 +0.9 748,026 + EX28DRAFT_0750 0.27 -0.9 748,027 - EX28DRAFT_0750 0.28 +0.6 748,027 - EX28DRAFT_0750 0.28 -2.2 748,029 - EX28DRAFT_0750 0.28 -0.7 748,293 - EX28DRAFT_0750 0.41 -0.4
Or see this region's nucleotide sequence