Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0742

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0740 and EX28DRAFT_0741 are separated by 12 nucleotidesEX28DRAFT_0741 and EX28DRAFT_0742 are separated by 46 nucleotidesEX28DRAFT_0742 and EX28DRAFT_0743 are separated by 463 nucleotides EX28DRAFT_0740: EX28DRAFT_0740 - PTS system, mannose/fructose/sorbose family, IID component, at 736,869 to 737,720 _0740 EX28DRAFT_0741: EX28DRAFT_0741 - PTS system, mannose/fructose/sorbose family, IIC component, at 737,733 to 738,533 _0741 EX28DRAFT_0742: EX28DRAFT_0742 - PTS system, mannose/fructose/sorbose family, IIB component, at 738,580 to 739,545 _0742 EX28DRAFT_0743: EX28DRAFT_0743 - Membrane protein TerC, possibly involved in tellurium resistance, at 740,009 to 741,568 _0743 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2 3at 737.612 kb on + strand, within EX28DRAFT_0740at 737.646 kb on - strandat 737.646 kb on - strandat 737.712 kb on - strandat 737.801 kb on - strandat 737.821 kb on + strand, within EX28DRAFT_0741at 737.902 kb on + strand, within EX28DRAFT_0741at 737.903 kb on - strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.964 kb on + strand, within EX28DRAFT_0741at 737.965 kb on - strand, within EX28DRAFT_0741at 738.045 kb on - strand, within EX28DRAFT_0741at 738.111 kb on + strand, within EX28DRAFT_0741at 738.112 kb on - strand, within EX28DRAFT_0741at 738.112 kb on - strand, within EX28DRAFT_0741at 738.186 kb on - strand, within EX28DRAFT_0741at 738.192 kb on - strand, within EX28DRAFT_0741at 738.425 kb on + strand, within EX28DRAFT_0741at 738.485 kb on + strandat 738.486 kb on - strandat 738.524 kb on + strandat 738.546 kb on - strandat 738.548 kb on + strandat 738.548 kb on + strandat 738.549 kb on - strandat 738.549 kb on - strandat 738.549 kb on - strandat 738.559 kb on + strandat 738.559 kb on + strandat 738.559 kb on + strandat 738.560 kb on - strandat 738.560 kb on - strandat 738.562 kb on - strandat 738.581 kb on + strandat 738.750 kb on + strand, within EX28DRAFT_0742at 738.863 kb on + strand, within EX28DRAFT_0742at 739.034 kb on - strand, within EX28DRAFT_0742at 739.047 kb on + strand, within EX28DRAFT_0742at 739.071 kb on - strand, within EX28DRAFT_0742at 739.071 kb on - strand, within EX28DRAFT_0742at 739.286 kb on + strand, within EX28DRAFT_0742at 739.286 kb on + strand, within EX28DRAFT_0742at 739.344 kb on + strand, within EX28DRAFT_0742at 739.344 kb on + strand, within EX28DRAFT_0742at 739.345 kb on - strand, within EX28DRAFT_0742at 739.345 kb on - strand, within EX28DRAFT_0742at 739.345 kb on - strand, within EX28DRAFT_0742at 739.345 kb on - strand, within EX28DRAFT_0742at 739.533 kb on + strandat 739.551 kb on - strandat 739.551 kb on - strandat 739.551 kb on - strandat 739.561 kb on - strandat 739.572 kb on + strandat 739.673 kb on - strandat 739.733 kb on + strandat 739.758 kb on + strandat 739.829 kb on - strandat 739.832 kb on - strandat 739.832 kb on - strandat 739.842 kb on + strandat 739.843 kb on - strandat 739.844 kb on + strandat 739.845 kb on - strandat 739.860 kb on + strandat 739.862 kb on + strandat 739.863 kb on - strandat 739.910 kb on - strandat 739.933 kb on + strandat 740.249 kb on + strand, within EX28DRAFT_0743at 740.249 kb on + strand, within EX28DRAFT_0743at 740.250 kb on - strand, within EX28DRAFT_0743at 740.271 kb on + strand, within EX28DRAFT_0743at 740.271 kb on + strand, within EX28DRAFT_0743at 740.322 kb on + strand, within EX28DRAFT_0743at 740.322 kb on + strand, within EX28DRAFT_0743at 740.322 kb on + strand, within EX28DRAFT_0743

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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737,612 + EX28DRAFT_0740 0.87 -0.5
737,646 - -0.2
737,646 - -0.3
737,712 - +3.0
737,801 - +0.1
737,821 + EX28DRAFT_0741 0.11 -0.4
737,902 + EX28DRAFT_0741 0.21 +0.7
737,903 - EX28DRAFT_0741 0.21 -0.4
737,964 + EX28DRAFT_0741 0.29 -0.2
737,964 + EX28DRAFT_0741 0.29 +0.6
737,964 + EX28DRAFT_0741 0.29 -0.9
737,965 - EX28DRAFT_0741 0.29 +0.1
738,045 - EX28DRAFT_0741 0.39 -0.4
738,111 + EX28DRAFT_0741 0.47 +0.9
738,112 - EX28DRAFT_0741 0.47 +0.6
738,112 - EX28DRAFT_0741 0.47 +0.0
738,186 - EX28DRAFT_0741 0.57 -1.1
738,192 - EX28DRAFT_0741 0.57 -0.0
738,425 + EX28DRAFT_0741 0.86 +0.2
738,485 + +0.1
738,486 - +0.1
738,524 + -1.3
738,546 - -0.0
738,548 + +0.2
738,548 + -1.0
738,549 - -1.0
738,549 - -0.9
738,549 - +0.2
738,559 + -0.1
738,559 + -0.1
738,559 + +0.9
738,560 - +0.2
738,560 - -0.6
738,562 - +0.9
738,581 + +0.5
738,750 + EX28DRAFT_0742 0.18 -0.1
738,863 + EX28DRAFT_0742 0.29 +1.8
739,034 - EX28DRAFT_0742 0.47 +2.2
739,047 + EX28DRAFT_0742 0.48 +0.1
739,071 - EX28DRAFT_0742 0.51 +0.8
739,071 - EX28DRAFT_0742 0.51 +0.1
739,286 + EX28DRAFT_0742 0.73 -0.1
739,286 + EX28DRAFT_0742 0.73 +0.4
739,344 + EX28DRAFT_0742 0.79 +0.2
739,344 + EX28DRAFT_0742 0.79 -0.5
739,345 - EX28DRAFT_0742 0.79 +1.5
739,345 - EX28DRAFT_0742 0.79 -0.2
739,345 - EX28DRAFT_0742 0.79 +3.0
739,345 - EX28DRAFT_0742 0.79 -0.4
739,533 + -0.3
739,551 - -2.2
739,551 - +0.0
739,551 - +2.0
739,561 - +0.1
739,572 + -1.2
739,673 - -1.3
739,733 + +0.4
739,758 + +0.6
739,829 - -0.6
739,832 - -1.0
739,832 - -1.1
739,842 + +0.6
739,843 - -1.5
739,844 + -1.8
739,845 - -1.9
739,860 + -1.4
739,862 + -0.0
739,863 - +0.7
739,910 - +0.3
739,933 + -0.2
740,249 + EX28DRAFT_0743 0.15 +1.2
740,249 + EX28DRAFT_0743 0.15 -1.6
740,250 - EX28DRAFT_0743 0.15 -1.2
740,271 + EX28DRAFT_0743 0.17 -0.9
740,271 + EX28DRAFT_0743 0.17 -0.1
740,322 + EX28DRAFT_0743 0.20 +0.3
740,322 + EX28DRAFT_0743 0.20 +1.0
740,322 + EX28DRAFT_0743 0.20 -0.8

Or see this region's nucleotide sequence