Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0729

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0728 and EX28DRAFT_0729 are separated by 179 nucleotidesEX28DRAFT_0729 and EX28DRAFT_0730 are separated by 68 nucleotidesEX28DRAFT_0730 and EX28DRAFT_0731 are separated by 161 nucleotidesEX28DRAFT_0731 and EX28DRAFT_0732 are separated by 74 nucleotides EX28DRAFT_0728: EX28DRAFT_0728 - Major Facilitator Superfamily, at 727,347 to 728,720 _0728 EX28DRAFT_0729: EX28DRAFT_0729 - transcriptional regulator, IclR family, at 728,900 to 729,691 _0729 EX28DRAFT_0730: EX28DRAFT_0730 - YobH-like protein, at 729,760 to 729,999 _0730 EX28DRAFT_0731: EX28DRAFT_0731 - MgrB protein, at 730,161 to 730,304 _0731 EX28DRAFT_0732: EX28DRAFT_0732 - YebO-like protein, at 730,379 to 730,669 _0732 Position (kb) 728 729 730Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 727.923 kb on - strand, within EX28DRAFT_0728at 727.923 kb on - strand, within EX28DRAFT_0728at 727.944 kb on + strand, within EX28DRAFT_0728at 728.169 kb on + strand, within EX28DRAFT_0728at 728.196 kb on - strand, within EX28DRAFT_0728at 728.199 kb on - strand, within EX28DRAFT_0728at 728.199 kb on - strand, within EX28DRAFT_0728at 728.246 kb on + strand, within EX28DRAFT_0728at 728.246 kb on + strand, within EX28DRAFT_0728at 728.247 kb on - strand, within EX28DRAFT_0728at 728.406 kb on - strand, within EX28DRAFT_0728at 728.430 kb on + strand, within EX28DRAFT_0728at 728.430 kb on + strand, within EX28DRAFT_0728at 728.471 kb on - strand, within EX28DRAFT_0728at 728.493 kb on - strand, within EX28DRAFT_0728at 728.649 kb on - strandat 728.669 kb on + strandat 728.669 kb on + strandat 728.670 kb on - strandat 728.677 kb on + strandat 728.722 kb on - strandat 728.763 kb on + strandat 728.788 kb on + strandat 728.849 kb on - strandat 728.875 kb on + strandat 728.875 kb on + strandat 728.897 kb on + strandat 728.967 kb on + strandat 728.994 kb on + strand, within EX28DRAFT_0729at 728.998 kb on + strand, within EX28DRAFT_0729at 729.032 kb on - strand, within EX28DRAFT_0729at 729.042 kb on + strand, within EX28DRAFT_0729at 729.043 kb on - strand, within EX28DRAFT_0729at 729.054 kb on + strand, within EX28DRAFT_0729at 729.077 kb on + strand, within EX28DRAFT_0729at 729.257 kb on + strand, within EX28DRAFT_0729at 729.257 kb on + strand, within EX28DRAFT_0729at 729.281 kb on + strand, within EX28DRAFT_0729at 729.281 kb on + strand, within EX28DRAFT_0729at 729.282 kb on - strand, within EX28DRAFT_0729at 729.297 kb on - strand, within EX28DRAFT_0729at 729.556 kb on - strand, within EX28DRAFT_0729at 729.570 kb on + strand, within EX28DRAFT_0729at 729.571 kb on - strand, within EX28DRAFT_0729at 729.575 kb on - strand, within EX28DRAFT_0729at 729.592 kb on - strand, within EX28DRAFT_0729at 729.620 kb on + strandat 729.620 kb on + strandat 729.621 kb on - strandat 729.650 kb on - strandat 729.704 kb on + strandat 729.872 kb on - strand, within EX28DRAFT_0730at 729.875 kb on + strand, within EX28DRAFT_0730at 729.975 kb on + strand, within EX28DRAFT_0730at 730.022 kb on + strandat 730.034 kb on - strandat 730.034 kb on - strandat 730.100 kb on - strandat 730.133 kb on + strandat 730.305 kb on + strandat 730.305 kb on + strandat 730.625 kb on - strand, within EX28DRAFT_0732at 730.625 kb on - strand, within EX28DRAFT_0732

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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727,923 - EX28DRAFT_0728 0.42 -0.4
727,923 - EX28DRAFT_0728 0.42 +0.2
727,944 + EX28DRAFT_0728 0.43 -2.7
728,169 + EX28DRAFT_0728 0.60 +0.0
728,196 - EX28DRAFT_0728 0.62 +0.2
728,199 - EX28DRAFT_0728 0.62 -0.8
728,199 - EX28DRAFT_0728 0.62 +2.5
728,246 + EX28DRAFT_0728 0.65 +0.5
728,246 + EX28DRAFT_0728 0.65 -0.0
728,247 - EX28DRAFT_0728 0.66 -0.7
728,406 - EX28DRAFT_0728 0.77 -0.9
728,430 + EX28DRAFT_0728 0.79 -0.5
728,430 + EX28DRAFT_0728 0.79 -1.1
728,471 - EX28DRAFT_0728 0.82 -0.6
728,493 - EX28DRAFT_0728 0.83 -0.4
728,649 - -2.0
728,669 + -0.1
728,669 + +1.7
728,670 - -0.9
728,677 + -0.0
728,722 - -1.6
728,763 + -0.4
728,788 + +1.2
728,849 - -1.7
728,875 + -0.5
728,875 + -1.1
728,897 + -0.7
728,967 + -1.0
728,994 + EX28DRAFT_0729 0.12 -1.1
728,998 + EX28DRAFT_0729 0.12 -5.6
729,032 - EX28DRAFT_0729 0.17 -2.5
729,042 + EX28DRAFT_0729 0.18 -1.1
729,043 - EX28DRAFT_0729 0.18 +0.9
729,054 + EX28DRAFT_0729 0.19 -0.3
729,077 + EX28DRAFT_0729 0.22 -2.2
729,257 + EX28DRAFT_0729 0.45 -2.0
729,257 + EX28DRAFT_0729 0.45 -3.6
729,281 + EX28DRAFT_0729 0.48 -1.0
729,281 + EX28DRAFT_0729 0.48 +2.5
729,282 - EX28DRAFT_0729 0.48 -0.8
729,297 - EX28DRAFT_0729 0.50 +2.3
729,556 - EX28DRAFT_0729 0.83 -3.8
729,570 + EX28DRAFT_0729 0.85 -1.1
729,571 - EX28DRAFT_0729 0.85 -1.3
729,575 - EX28DRAFT_0729 0.85 -1.4
729,592 - EX28DRAFT_0729 0.87 -1.0
729,620 + -0.5
729,620 + -0.1
729,621 - -0.6
729,650 - -2.0
729,704 + +0.2
729,872 - EX28DRAFT_0730 0.47 +0.2
729,875 + EX28DRAFT_0730 0.48 +1.5
729,975 + EX28DRAFT_0730 0.90 -2.5
730,022 + +0.6
730,034 - +0.5
730,034 - -4.4
730,100 - -0.3
730,133 + +0.2
730,305 + -0.5
730,305 + +0.9
730,625 - EX28DRAFT_0732 0.85 -1.2
730,625 - EX28DRAFT_0732 0.85 -0.7

Or see this region's nucleotide sequence