Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0591

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0590 and EX28DRAFT_0591 are separated by 57 nucleotidesEX28DRAFT_0591 and EX28DRAFT_0592 are separated by 284 nucleotides EX28DRAFT_0590: EX28DRAFT_0590 - Predicted sugar phosphate isomerase, at 593,155 to 594,018 _0590 EX28DRAFT_0591: EX28DRAFT_0591 - Outer membrane protein (porin), at 594,076 to 595,218 _0591 EX28DRAFT_0592: EX28DRAFT_0592 - Predicted HD superfamily hydrolase, at 595,503 to 596,204 _0592 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 593.109 kb on + strandat 593.109 kb on + strandat 593.110 kb on - strandat 593.110 kb on - strandat 593.110 kb on - strandat 593.121 kb on + strandat 593.121 kb on + strandat 593.122 kb on - strandat 593.122 kb on - strandat 593.122 kb on - strandat 593.142 kb on - strandat 593.163 kb on + strandat 593.212 kb on - strandat 593.217 kb on + strandat 593.218 kb on - strandat 593.268 kb on + strand, within EX28DRAFT_0590at 593.269 kb on - strand, within EX28DRAFT_0590at 593.269 kb on - strand, within EX28DRAFT_0590at 593.280 kb on + strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.281 kb on - strand, within EX28DRAFT_0590at 593.295 kb on - strand, within EX28DRAFT_0590at 593.295 kb on - strand, within EX28DRAFT_0590at 593.298 kb on + strand, within EX28DRAFT_0590at 593.299 kb on - strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.301 kb on + strand, within EX28DRAFT_0590at 593.302 kb on - strand, within EX28DRAFT_0590at 593.302 kb on - strand, within EX28DRAFT_0590at 593.468 kb on - strand, within EX28DRAFT_0590at 593.518 kb on - strand, within EX28DRAFT_0590at 593.518 kb on - strand, within EX28DRAFT_0590at 593.692 kb on + strand, within EX28DRAFT_0590at 593.695 kb on - strand, within EX28DRAFT_0590at 593.776 kb on + strand, within EX28DRAFT_0590at 593.898 kb on + strand, within EX28DRAFT_0590at 593.904 kb on + strand, within EX28DRAFT_0590at 593.911 kb on - strand, within EX28DRAFT_0590at 593.911 kb on - strand, within EX28DRAFT_0590at 593.979 kb on + strandat 593.988 kb on + strandat 594.019 kb on + strandat 594.019 kb on + strandat 594.020 kb on - strandat 594.077 kb on + strandat 594.086 kb on + strandat 594.087 kb on - strandat 594.123 kb on + strandat 594.129 kb on - strandat 594.138 kb on - strandat 594.182 kb on + strandat 594.182 kb on + strandat 594.182 kb on + strandat 594.182 kb on + strandat 594.182 kb on + strandat 594.182 kb on + strandat 594.183 kb on - strandat 594.183 kb on - strandat 594.230 kb on + strand, within EX28DRAFT_0591at 594.230 kb on + strand, within EX28DRAFT_0591at 594.230 kb on + strand, within EX28DRAFT_0591at 594.230 kb on + strand, within EX28DRAFT_0591at 594.231 kb on - strand, within EX28DRAFT_0591at 594.235 kb on - strand, within EX28DRAFT_0591at 594.284 kb on + strand, within EX28DRAFT_0591at 594.408 kb on - strand, within EX28DRAFT_0591at 594.422 kb on + strand, within EX28DRAFT_0591at 594.441 kb on - strand, within EX28DRAFT_0591at 594.441 kb on - strand, within EX28DRAFT_0591at 594.472 kb on - strand, within EX28DRAFT_0591at 594.594 kb on - strand, within EX28DRAFT_0591at 594.607 kb on - strand, within EX28DRAFT_0591at 594.607 kb on - strand, within EX28DRAFT_0591at 594.758 kb on + strand, within EX28DRAFT_0591at 594.810 kb on - strand, within EX28DRAFT_0591at 594.837 kb on + strand, within EX28DRAFT_0591at 594.923 kb on + strand, within EX28DRAFT_0591at 594.924 kb on - strand, within EX28DRAFT_0591at 595.115 kb on + strandat 595.146 kb on - strandat 595.289 kb on - strandat 595.580 kb on + strand, within EX28DRAFT_0592at 595.668 kb on + strand, within EX28DRAFT_0592at 595.668 kb on + strand, within EX28DRAFT_0592at 595.791 kb on - strand, within EX28DRAFT_0592at 595.791 kb on - strand, within EX28DRAFT_0592at 595.854 kb on - strand, within EX28DRAFT_0592at 596.052 kb on - strand, within EX28DRAFT_0592at 596.052 kb on - strand, within EX28DRAFT_0592

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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593,109 + +0.1
593,109 + -0.1
593,110 - +0.6
593,110 - -0.6
593,110 - +0.7
593,121 + +0.5
593,121 + +0.1
593,122 - -1.5
593,122 - +2.7
593,122 - -0.5
593,142 - +0.4
593,163 + -0.3
593,212 - +0.2
593,217 + +1.4
593,218 - +0.6
593,268 + EX28DRAFT_0590 0.13 +0.4
593,269 - EX28DRAFT_0590 0.13 -0.7
593,269 - EX28DRAFT_0590 0.13 +0.9
593,280 + EX28DRAFT_0590 0.14 -0.1
593,281 - EX28DRAFT_0590 0.15 -0.8
593,281 - EX28DRAFT_0590 0.15 -0.8
593,281 - EX28DRAFT_0590 0.15 -0.7
593,295 - EX28DRAFT_0590 0.16 -0.5
593,295 - EX28DRAFT_0590 0.16 -3.1
593,298 + EX28DRAFT_0590 0.17 -0.6
593,299 - EX28DRAFT_0590 0.17 +0.8
593,301 + EX28DRAFT_0590 0.17 +2.7
593,301 + EX28DRAFT_0590 0.17 +0.6
593,301 + EX28DRAFT_0590 0.17 +0.2
593,302 - EX28DRAFT_0590 0.17 -0.1
593,302 - EX28DRAFT_0590 0.17 +0.7
593,468 - EX28DRAFT_0590 0.36 +0.1
593,518 - EX28DRAFT_0590 0.42 -0.8
593,518 - EX28DRAFT_0590 0.42 -1.2
593,692 + EX28DRAFT_0590 0.62 +1.7
593,695 - EX28DRAFT_0590 0.62 -0.2
593,776 + EX28DRAFT_0590 0.72 +0.4
593,898 + EX28DRAFT_0590 0.86 -0.2
593,904 + EX28DRAFT_0590 0.87 -0.3
593,911 - EX28DRAFT_0590 0.88 -0.3
593,911 - EX28DRAFT_0590 0.88 -0.2
593,979 + +0.6
593,988 + +0.7
594,019 + -0.7
594,019 + -0.4
594,020 - -1.0
594,077 + -2.5
594,086 + +0.2
594,087 - +0.9
594,123 + +0.1
594,129 - +1.0
594,138 - +0.6
594,182 + -1.2
594,182 + -1.6
594,182 + -0.5
594,182 + -0.7
594,182 + +0.5
594,182 + +0.5
594,183 - -1.1
594,183 - +1.6
594,230 + EX28DRAFT_0591 0.13 -0.0
594,230 + EX28DRAFT_0591 0.13 -0.8
594,230 + EX28DRAFT_0591 0.13 +4.2
594,230 + EX28DRAFT_0591 0.13 -0.1
594,231 - EX28DRAFT_0591 0.14 +0.9
594,235 - EX28DRAFT_0591 0.14 +0.5
594,284 + EX28DRAFT_0591 0.18 -1.8
594,408 - EX28DRAFT_0591 0.29 +0.8
594,422 + EX28DRAFT_0591 0.30 +0.6
594,441 - EX28DRAFT_0591 0.32 +0.4
594,441 - EX28DRAFT_0591 0.32 -0.2
594,472 - EX28DRAFT_0591 0.35 +1.3
594,594 - EX28DRAFT_0591 0.45 +0.7
594,607 - EX28DRAFT_0591 0.46 +0.1
594,607 - EX28DRAFT_0591 0.46 +0.9
594,758 + EX28DRAFT_0591 0.60 +0.9
594,810 - EX28DRAFT_0591 0.64 -0.8
594,837 + EX28DRAFT_0591 0.67 -0.8
594,923 + EX28DRAFT_0591 0.74 +1.0
594,924 - EX28DRAFT_0591 0.74 -0.1
595,115 + -3.1
595,146 - -0.2
595,289 - +0.5
595,580 + EX28DRAFT_0592 0.11 +0.1
595,668 + EX28DRAFT_0592 0.24 +1.0
595,668 + EX28DRAFT_0592 0.24 +0.0
595,791 - EX28DRAFT_0592 0.41 -0.0
595,791 - EX28DRAFT_0592 0.41 -0.6
595,854 - EX28DRAFT_0592 0.50 +0.9
596,052 - EX28DRAFT_0592 0.78 -0.2
596,052 - EX28DRAFT_0592 0.78 -0.1

Or see this region's nucleotide sequence