Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0556

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0555 and EX28DRAFT_0556 are separated by 73 nucleotidesEX28DRAFT_0556 and EX28DRAFT_0557 are separated by 256 nucleotidesEX28DRAFT_0557 and EX28DRAFT_0558 overlap by 4 nucleotides EX28DRAFT_0555: EX28DRAFT_0555 - AMP nucleosidase, at 548,303 to 549,757 _0555 EX28DRAFT_0556: EX28DRAFT_0556 - metabolite-proton symporter, at 549,831 to 551,147 _0556 EX28DRAFT_0557: EX28DRAFT_0557 - Antimicrobial peptide resistance and lipid A acylation protein PagP, at 551,404 to 551,979 _0557 EX28DRAFT_0558: EX28DRAFT_0558 - Uncharacterized protein conserved in bacteria, at 551,976 to 552,941 _0558 Position (kb) 549 550 551 552Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 549.075 kb on + strand, within EX28DRAFT_0555at 549.142 kb on - strand, within EX28DRAFT_0555at 549.270 kb on + strand, within EX28DRAFT_0555at 549.384 kb on + strand, within EX28DRAFT_0555at 549.385 kb on - strand, within EX28DRAFT_0555at 549.653 kb on - strandat 549.748 kb on + strandat 549.751 kb on + strandat 549.752 kb on - strandat 549.800 kb on + strandat 549.800 kb on + strandat 549.800 kb on + strandat 549.800 kb on + strandat 549.800 kb on + strandat 549.801 kb on - strandat 549.801 kb on - strandat 550.059 kb on + strand, within EX28DRAFT_0556at 550.074 kb on - strand, within EX28DRAFT_0556at 550.146 kb on - strand, within EX28DRAFT_0556at 550.193 kb on - strand, within EX28DRAFT_0556at 550.321 kb on + strand, within EX28DRAFT_0556at 550.322 kb on - strand, within EX28DRAFT_0556at 550.322 kb on - strand, within EX28DRAFT_0556at 550.322 kb on - strand, within EX28DRAFT_0556at 550.322 kb on - strand, within EX28DRAFT_0556at 550.346 kb on + strand, within EX28DRAFT_0556at 550.348 kb on + strand, within EX28DRAFT_0556at 550.348 kb on + strand, within EX28DRAFT_0556at 550.348 kb on + strand, within EX28DRAFT_0556at 550.348 kb on + strand, within EX28DRAFT_0556at 550.348 kb on + strand, within EX28DRAFT_0556at 550.587 kb on - strand, within EX28DRAFT_0556at 550.596 kb on - strand, within EX28DRAFT_0556at 550.596 kb on - strand, within EX28DRAFT_0556at 550.599 kb on + strand, within EX28DRAFT_0556at 550.600 kb on - strand, within EX28DRAFT_0556at 550.600 kb on - strand, within EX28DRAFT_0556at 550.663 kb on + strand, within EX28DRAFT_0556at 550.705 kb on - strand, within EX28DRAFT_0556at 551.042 kb on - strandat 551.172 kb on + strandat 551.172 kb on + strandat 551.172 kb on + strandat 551.177 kb on - strandat 551.177 kb on - strandat 551.185 kb on - strandat 551.268 kb on - strandat 551.318 kb on - strandat 551.320 kb on + strandat 551.321 kb on - strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.367 kb on + strandat 551.368 kb on - strandat 551.368 kb on - strandat 551.566 kb on + strand, within EX28DRAFT_0557at 551.598 kb on + strand, within EX28DRAFT_0557at 551.598 kb on + strand, within EX28DRAFT_0557at 551.603 kb on - strand, within EX28DRAFT_0557at 551.627 kb on - strand, within EX28DRAFT_0557at 551.848 kb on + strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.849 kb on - strand, within EX28DRAFT_0557at 551.892 kb on + strand, within EX28DRAFT_0557at 551.892 kb on + strand, within EX28DRAFT_0557at 551.893 kb on - strand, within EX28DRAFT_0557at 551.893 kb on - strand, within EX28DRAFT_0557at 551.917 kb on + strand, within EX28DRAFT_0557at 551.917 kb on + strand, within EX28DRAFT_0557at 551.918 kb on - strand, within EX28DRAFT_0557at 551.932 kb on + strandat 551.932 kb on + strandat 551.933 kb on - strandat 551.933 kb on - strandat 551.933 kb on - strandat 551.969 kb on + strandat 552.041 kb on + strandat 552.136 kb on + strand, within EX28DRAFT_0558at 552.137 kb on - strand, within EX28DRAFT_0558

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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549,075 + EX28DRAFT_0555 0.53 +0.3
549,142 - EX28DRAFT_0555 0.58 -0.4
549,270 + EX28DRAFT_0555 0.66 -0.5
549,384 + EX28DRAFT_0555 0.74 -2.0
549,385 - EX28DRAFT_0555 0.74 -1.1
549,653 - -1.2
549,748 + +1.0
549,751 + -0.7
549,752 - +2.4
549,800 + +0.7
549,800 + +0.2
549,800 + +1.0
549,800 + +1.0
549,800 + +3.2
549,801 - +1.5
549,801 - +0.1
550,059 + EX28DRAFT_0556 0.17 +0.8
550,074 - EX28DRAFT_0556 0.18 +0.2
550,146 - EX28DRAFT_0556 0.24 -0.4
550,193 - EX28DRAFT_0556 0.27 -0.1
550,321 + EX28DRAFT_0556 0.37 -0.3
550,322 - EX28DRAFT_0556 0.37 +0.2
550,322 - EX28DRAFT_0556 0.37 -1.1
550,322 - EX28DRAFT_0556 0.37 -1.0
550,322 - EX28DRAFT_0556 0.37 -0.2
550,346 + EX28DRAFT_0556 0.39 +0.5
550,348 + EX28DRAFT_0556 0.39 +0.1
550,348 + EX28DRAFT_0556 0.39 +0.4
550,348 + EX28DRAFT_0556 0.39 -0.2
550,348 + EX28DRAFT_0556 0.39 -2.6
550,348 + EX28DRAFT_0556 0.39 +0.5
550,587 - EX28DRAFT_0556 0.57 -0.1
550,596 - EX28DRAFT_0556 0.58 +1.5
550,596 - EX28DRAFT_0556 0.58 +0.4
550,599 + EX28DRAFT_0556 0.58 +1.6
550,600 - EX28DRAFT_0556 0.58 +1.6
550,600 - EX28DRAFT_0556 0.58 +0.8
550,663 + EX28DRAFT_0556 0.63 -1.4
550,705 - EX28DRAFT_0556 0.66 -0.0
551,042 - -0.3
551,172 + -0.6
551,172 + -0.9
551,172 + -0.3
551,177 - +4.6
551,177 - +0.4
551,185 - -1.9
551,268 - +0.1
551,318 - -0.1
551,320 + +0.8
551,321 - +0.2
551,367 + -0.1
551,367 + -1.1
551,367 + -0.6
551,367 + -0.6
551,368 - -0.4
551,368 - -0.3
551,566 + EX28DRAFT_0557 0.28 +0.1
551,598 + EX28DRAFT_0557 0.34 +1.2
551,598 + EX28DRAFT_0557 0.34 +2.9
551,603 - EX28DRAFT_0557 0.35 +0.3
551,627 - EX28DRAFT_0557 0.39 +0.2
551,848 + EX28DRAFT_0557 0.77 +0.0
551,849 - EX28DRAFT_0557 0.77 -1.3
551,849 - EX28DRAFT_0557 0.77 +0.5
551,849 - EX28DRAFT_0557 0.77 -2.5
551,892 + EX28DRAFT_0557 0.85 +0.9
551,892 + EX28DRAFT_0557 0.85 -1.9
551,893 - EX28DRAFT_0557 0.85 -0.3
551,893 - EX28DRAFT_0557 0.85 -0.2
551,917 + EX28DRAFT_0557 0.89 +3.7
551,917 + EX28DRAFT_0557 0.89 +0.0
551,918 - EX28DRAFT_0557 0.89 -0.5
551,932 + -0.4
551,932 + -2.4
551,933 - +0.8
551,933 - -2.9
551,933 - +0.3
551,969 + +0.2
552,041 + +1.2
552,136 + EX28DRAFT_0558 0.17 -0.5
552,137 - EX28DRAFT_0558 0.17 +0.1

Or see this region's nucleotide sequence