Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0528 and EX28DRAFT_0529 are separated by 146 nucleotides EX28DRAFT_0529 and EX28DRAFT_0530 are separated by 226 nucleotides
EX28DRAFT_0528: EX28DRAFT_0528 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 521,406 to 522,872
_0528
EX28DRAFT_0529: EX28DRAFT_0529 - 6-phosphogluconate dehydrogenase (decarboxylating), at 523,019 to 524,425
_0529
EX28DRAFT_0530: EX28DRAFT_0530 - nucleotide sugar dehydrogenase, at 524,652 to 525,818
_0530
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 522.123 kb on + strand, within EX28DRAFT_0528 at 522.743 kb on + strand at 522.810 kb on + strand at 522.958 kb on + strand at 522.970 kb on - strand at 523.013 kb on + strand at 523.017 kb on + strand at 523.017 kb on + strand at 523.100 kb on - strand at 523.533 kb on - strand, within EX28DRAFT_0529 at 523.560 kb on - strand, within EX28DRAFT_0529 at 523.880 kb on + strand, within EX28DRAFT_0529 at 524.192 kb on + strand, within EX28DRAFT_0529 at 524.193 kb on - strand, within EX28DRAFT_0529 at 524.371 kb on + strand at 524.375 kb on + strand at 524.408 kb on - strand at 524.423 kb on + strand at 524.428 kb on + strand at 524.507 kb on - strand at 524.507 kb on - strand at 524.536 kb on + strand at 524.591 kb on + strand at 524.591 kb on + strand at 524.591 kb on + strand at 524.591 kb on + strand at 524.591 kb on + strand at 524.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 522,123 + EX28DRAFT_0528 0.49 -1.9 522,743 + +0.5 522,810 + +0.6 522,958 + -0.4 522,970 - +0.6 523,013 + -1.1 523,017 + -0.2 523,017 + -0.0 523,100 - -0.2 523,533 - EX28DRAFT_0529 0.37 -1.3 523,560 - EX28DRAFT_0529 0.38 -1.6 523,880 + EX28DRAFT_0529 0.61 -3.2 524,192 + EX28DRAFT_0529 0.83 -0.3 524,193 - EX28DRAFT_0529 0.83 -0.7 524,371 + -2.9 524,375 + -0.7 524,408 - +0.2 524,423 + -0.5 524,428 + +0.5 524,507 - +0.0 524,507 - -0.0 524,536 + +0.7 524,591 + +0.6 524,591 + +0.3 524,591 + -0.3 524,591 + -1.4 524,591 + -0.1 524,592 - -1.2
Or see this region's nucleotide sequence