Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0410

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0409 and EX28DRAFT_0410 are separated by 49 nucleotidesEX28DRAFT_0410 and EX28DRAFT_0411 are separated by 124 nucleotidesEX28DRAFT_0411 and EX28DRAFT_0412 are separated by 126 nucleotides EX28DRAFT_0409: EX28DRAFT_0409 - ABC-type glucose/galactose transport system, permease component, at 386,991 to 388,001 _0409 EX28DRAFT_0410: EX28DRAFT_0410 - Glutamine synthetase, at 388,051 to 389,439 _0410 EX28DRAFT_0411: EX28DRAFT_0411 - Uncharacterized membrane protein, at 389,564 to 390,280 _0411 EX28DRAFT_0412: EX28DRAFT_0412 - cytidine deaminase (EC 3.5.4.5), at 390,407 to 391,291 _0412 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1at 387.059 kb on - strandat 387.061 kb on + strandat 387.093 kb on - strand, within EX28DRAFT_0409at 387.100 kb on + strand, within EX28DRAFT_0409at 387.146 kb on + strand, within EX28DRAFT_0409at 387.147 kb on - strand, within EX28DRAFT_0409at 387.362 kb on + strand, within EX28DRAFT_0409at 387.365 kb on + strand, within EX28DRAFT_0409at 387.375 kb on + strand, within EX28DRAFT_0409at 387.411 kb on - strand, within EX28DRAFT_0409at 387.444 kb on + strand, within EX28DRAFT_0409at 387.445 kb on - strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.543 kb on + strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.544 kb on - strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.545 kb on + strand, within EX28DRAFT_0409at 387.555 kb on + strand, within EX28DRAFT_0409at 387.714 kb on + strand, within EX28DRAFT_0409at 387.780 kb on + strand, within EX28DRAFT_0409at 387.781 kb on - strand, within EX28DRAFT_0409at 387.930 kb on + strandat 387.936 kb on - strandat 387.985 kb on - strandat 387.999 kb on + strandat 387.999 kb on + strandat 388.000 kb on - strandat 388.045 kb on + strandat 388.046 kb on - strandat 388.052 kb on + strandat 388.164 kb on - strandat 388.399 kb on - strand, within EX28DRAFT_0410at 388.400 kb on + strand, within EX28DRAFT_0410at 388.414 kb on - strand, within EX28DRAFT_0410at 388.537 kb on - strand, within EX28DRAFT_0410at 388.747 kb on + strand, within EX28DRAFT_0410at 388.755 kb on - strand, within EX28DRAFT_0410at 388.855 kb on - strand, within EX28DRAFT_0410at 388.858 kb on - strand, within EX28DRAFT_0410at 388.858 kb on - strand, within EX28DRAFT_0410at 388.985 kb on - strand, within EX28DRAFT_0410at 389.013 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.266 kb on + strand, within EX28DRAFT_0410at 389.267 kb on - strand, within EX28DRAFT_0410at 389.386 kb on + strandat 389.440 kb on + strandat 389.441 kb on - strandat 389.494 kb on - strandat 389.549 kb on - strandat 389.550 kb on + strandat 389.551 kb on - strandat 389.566 kb on - strandat 389.585 kb on - strandat 389.672 kb on + strand, within EX28DRAFT_0411at 389.700 kb on + strand, within EX28DRAFT_0411at 389.700 kb on + strand, within EX28DRAFT_0411at 389.701 kb on - strand, within EX28DRAFT_0411at 389.759 kb on - strand, within EX28DRAFT_0411at 389.781 kb on + strand, within EX28DRAFT_0411at 389.804 kb on - strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.030 kb on + strand, within EX28DRAFT_0411at 390.051 kb on + strand, within EX28DRAFT_0411at 390.052 kb on - strand, within EX28DRAFT_0411at 390.088 kb on - strand, within EX28DRAFT_0411at 390.114 kb on + strand, within EX28DRAFT_0411at 390.115 kb on - strand, within EX28DRAFT_0411at 390.180 kb on + strand, within EX28DRAFT_0411at 390.181 kb on - strand, within EX28DRAFT_0411at 390.237 kb on - strandat 390.237 kb on - strandat 390.318 kb on + strandat 390.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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387,059 - +1.6
387,061 + -0.1
387,093 - EX28DRAFT_0409 0.10 +0.2
387,100 + EX28DRAFT_0409 0.11 +0.7
387,146 + EX28DRAFT_0409 0.15 +0.6
387,147 - EX28DRAFT_0409 0.15 -0.4
387,362 + EX28DRAFT_0409 0.37 +0.7
387,365 + EX28DRAFT_0409 0.37 +0.8
387,375 + EX28DRAFT_0409 0.38 -1.6
387,411 - EX28DRAFT_0409 0.42 -0.1
387,444 + EX28DRAFT_0409 0.45 -0.3
387,445 - EX28DRAFT_0409 0.45 -1.3
387,543 + EX28DRAFT_0409 0.55 -1.0
387,543 + EX28DRAFT_0409 0.55 +0.7
387,543 + EX28DRAFT_0409 0.55 +0.6
387,544 - EX28DRAFT_0409 0.55 -1.4
387,544 - EX28DRAFT_0409 0.55 -0.1
387,544 - EX28DRAFT_0409 0.55 +0.3
387,545 + EX28DRAFT_0409 0.55 +0.1
387,545 + EX28DRAFT_0409 0.55 -0.3
387,555 + EX28DRAFT_0409 0.56 -1.2
387,714 + EX28DRAFT_0409 0.72 +0.7
387,780 + EX28DRAFT_0409 0.78 +0.5
387,781 - EX28DRAFT_0409 0.78 -2.3
387,930 + -1.1
387,936 - +0.2
387,985 - +1.0
387,999 + +0.9
387,999 + +0.9
388,000 - -0.3
388,045 + +1.0
388,046 - +0.8
388,052 + -0.1
388,164 - +0.2
388,399 - EX28DRAFT_0410 0.25 +0.2
388,400 + EX28DRAFT_0410 0.25 +1.3
388,414 - EX28DRAFT_0410 0.26 +1.6
388,537 - EX28DRAFT_0410 0.35 +1.5
388,747 + EX28DRAFT_0410 0.50 -0.5
388,755 - EX28DRAFT_0410 0.51 -0.1
388,855 - EX28DRAFT_0410 0.58 +0.3
388,858 - EX28DRAFT_0410 0.58 +0.1
388,858 - EX28DRAFT_0410 0.58 +0.6
388,985 - EX28DRAFT_0410 0.67 -1.1
389,013 + EX28DRAFT_0410 0.69 +0.0
389,266 + EX28DRAFT_0410 0.87 -0.2
389,266 + EX28DRAFT_0410 0.87 +0.8
389,266 + EX28DRAFT_0410 0.87 +0.1
389,267 - EX28DRAFT_0410 0.88 -0.7
389,386 + -0.2
389,440 + -0.5
389,441 - +0.8
389,494 - +0.3
389,549 - -1.6
389,550 + -0.2
389,551 - -0.3
389,566 - +1.4
389,585 - +0.0
389,672 + EX28DRAFT_0411 0.15 -1.1
389,700 + EX28DRAFT_0411 0.19 -0.1
389,700 + EX28DRAFT_0411 0.19 -0.9
389,701 - EX28DRAFT_0411 0.19 -1.0
389,759 - EX28DRAFT_0411 0.27 -1.0
389,781 + EX28DRAFT_0411 0.30 -1.1
389,804 - EX28DRAFT_0411 0.33 -1.9
390,030 + EX28DRAFT_0411 0.65 -1.4
390,030 + EX28DRAFT_0411 0.65 +0.7
390,030 + EX28DRAFT_0411 0.65 -2.4
390,051 + EX28DRAFT_0411 0.68 -0.4
390,052 - EX28DRAFT_0411 0.68 +0.6
390,088 - EX28DRAFT_0411 0.73 -0.9
390,114 + EX28DRAFT_0411 0.77 -0.5
390,115 - EX28DRAFT_0411 0.77 -2.0
390,180 + EX28DRAFT_0411 0.86 +1.7
390,181 - EX28DRAFT_0411 0.86 -1.3
390,237 - -0.4
390,237 - -1.6
390,318 + +0.4
390,419 + -0.0

Or see this region's nucleotide sequence