Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0271

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0270 and EX28DRAFT_0271 overlap by 1 nucleotidesEX28DRAFT_0271 and EX28DRAFT_0272 are separated by 224 nucleotidesEX28DRAFT_0272 and EX28DRAFT_0273 are separated by 46 nucleotides EX28DRAFT_0270: EX28DRAFT_0270 - fatty oxidation complex, beta subunit FadI, at 231,295 to 232,605 _0270 EX28DRAFT_0271: EX28DRAFT_0271 - fatty oxidation complex, alpha subunit FadJ, at 232,605 to 234,752 _0271 EX28DRAFT_0272: EX28DRAFT_0272 - phosphohistidine phosphatase, SixA, at 234,977 to 235,447 _0272 EX28DRAFT_0273: EX28DRAFT_0273 - Uncharacterized protein conserved in bacteria, at 235,494 to 236,045 _0273 Position (kb) 232 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.738 kb on + strand, within EX28DRAFT_0270at 231.806 kb on + strand, within EX28DRAFT_0270at 231.807 kb on - strand, within EX28DRAFT_0270at 231.982 kb on + strand, within EX28DRAFT_0270at 231.982 kb on + strand, within EX28DRAFT_0270at 231.984 kb on + strand, within EX28DRAFT_0270at 231.984 kb on + strand, within EX28DRAFT_0270at 232.017 kb on + strand, within EX28DRAFT_0270at 232.018 kb on - strand, within EX28DRAFT_0270at 232.018 kb on - strand, within EX28DRAFT_0270at 232.196 kb on + strand, within EX28DRAFT_0270at 232.197 kb on - strand, within EX28DRAFT_0270at 232.197 kb on - strand, within EX28DRAFT_0270at 232.204 kb on + strand, within EX28DRAFT_0270at 232.205 kb on - strand, within EX28DRAFT_0270at 232.205 kb on - strand, within EX28DRAFT_0270at 232.205 kb on - strand, within EX28DRAFT_0270at 232.205 kb on - strand, within EX28DRAFT_0270at 232.245 kb on - strand, within EX28DRAFT_0270at 232.317 kb on + strand, within EX28DRAFT_0270at 232.317 kb on + strand, within EX28DRAFT_0270at 232.355 kb on + strand, within EX28DRAFT_0270at 232.431 kb on + strand, within EX28DRAFT_0270at 232.511 kb on + strandat 232.512 kb on - strandat 232.626 kb on - strandat 232.630 kb on + strandat 232.776 kb on - strandat 232.776 kb on - strandat 232.801 kb on + strandat 232.820 kb on + strand, within EX28DRAFT_0271at 232.820 kb on + strand, within EX28DRAFT_0271at 232.821 kb on - strand, within EX28DRAFT_0271at 233.111 kb on - strand, within EX28DRAFT_0271at 233.582 kb on + strand, within EX28DRAFT_0271at 233.608 kb on + strand, within EX28DRAFT_0271at 233.625 kb on - strand, within EX28DRAFT_0271at 233.625 kb on - strand, within EX28DRAFT_0271at 233.656 kb on - strand, within EX28DRAFT_0271at 233.717 kb on + strand, within EX28DRAFT_0271at 233.718 kb on - strand, within EX28DRAFT_0271at 233.873 kb on + strand, within EX28DRAFT_0271at 233.982 kb on - strand, within EX28DRAFT_0271at 234.084 kb on + strand, within EX28DRAFT_0271at 234.084 kb on + strand, within EX28DRAFT_0271at 234.084 kb on + strand, within EX28DRAFT_0271at 234.109 kb on - strand, within EX28DRAFT_0271at 234.109 kb on - strand, within EX28DRAFT_0271at 234.109 kb on - strand, within EX28DRAFT_0271at 234.246 kb on - strand, within EX28DRAFT_0271at 234.406 kb on + strand, within EX28DRAFT_0271at 234.407 kb on - strand, within EX28DRAFT_0271at 234.409 kb on - strand, within EX28DRAFT_0271at 234.507 kb on - strand, within EX28DRAFT_0271at 234.576 kb on + strandat 234.632 kb on + strandat 234.671 kb on + strandat 234.688 kb on + strandat 234.805 kb on - strandat 234.819 kb on + strandat 234.819 kb on + strandat 234.821 kb on + strandat 234.825 kb on + strandat 234.905 kb on + strandat 234.973 kb on + strandat 235.021 kb on - strandat 235.159 kb on + strand, within EX28DRAFT_0272at 235.233 kb on - strand, within EX28DRAFT_0272at 235.562 kb on - strand, within EX28DRAFT_0273at 235.631 kb on + strand, within EX28DRAFT_0273at 235.637 kb on + strand, within EX28DRAFT_0273

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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231,738 + EX28DRAFT_0270 0.34 -0.1
231,806 + EX28DRAFT_0270 0.39 -1.3
231,807 - EX28DRAFT_0270 0.39 -0.1
231,982 + EX28DRAFT_0270 0.52 +0.1
231,982 + EX28DRAFT_0270 0.52 +0.4
231,984 + EX28DRAFT_0270 0.53 -0.7
231,984 + EX28DRAFT_0270 0.53 +0.3
232,017 + EX28DRAFT_0270 0.55 -0.1
232,018 - EX28DRAFT_0270 0.55 +1.6
232,018 - EX28DRAFT_0270 0.55 +0.5
232,196 + EX28DRAFT_0270 0.69 +0.8
232,197 - EX28DRAFT_0270 0.69 -0.2
232,197 - EX28DRAFT_0270 0.69 -0.0
232,204 + EX28DRAFT_0270 0.69 +0.3
232,205 - EX28DRAFT_0270 0.69 -0.0
232,205 - EX28DRAFT_0270 0.69 +0.3
232,205 - EX28DRAFT_0270 0.69 -1.2
232,205 - EX28DRAFT_0270 0.69 -0.9
232,245 - EX28DRAFT_0270 0.72 -1.4
232,317 + EX28DRAFT_0270 0.78 +0.2
232,317 + EX28DRAFT_0270 0.78 +0.2
232,355 + EX28DRAFT_0270 0.81 +0.5
232,431 + EX28DRAFT_0270 0.87 +0.2
232,511 + +0.5
232,512 - +1.2
232,626 - +0.1
232,630 + +1.2
232,776 - -1.5
232,776 - -1.9
232,801 + +0.5
232,820 + EX28DRAFT_0271 0.10 +0.1
232,820 + EX28DRAFT_0271 0.10 -0.6
232,821 - EX28DRAFT_0271 0.10 +2.0
233,111 - EX28DRAFT_0271 0.24 -0.3
233,582 + EX28DRAFT_0271 0.45 -0.4
233,608 + EX28DRAFT_0271 0.47 +0.7
233,625 - EX28DRAFT_0271 0.47 +1.1
233,625 - EX28DRAFT_0271 0.47 +0.0
233,656 - EX28DRAFT_0271 0.49 -0.6
233,717 + EX28DRAFT_0271 0.52 +0.2
233,718 - EX28DRAFT_0271 0.52 +0.0
233,873 + EX28DRAFT_0271 0.59 +0.2
233,982 - EX28DRAFT_0271 0.64 +1.7
234,084 + EX28DRAFT_0271 0.69 -1.1
234,084 + EX28DRAFT_0271 0.69 -2.5
234,084 + EX28DRAFT_0271 0.69 +0.9
234,109 - EX28DRAFT_0271 0.70 -0.1
234,109 - EX28DRAFT_0271 0.70 -0.6
234,109 - EX28DRAFT_0271 0.70 +0.2
234,246 - EX28DRAFT_0271 0.76 -0.3
234,406 + EX28DRAFT_0271 0.84 +0.0
234,407 - EX28DRAFT_0271 0.84 +0.2
234,409 - EX28DRAFT_0271 0.84 -0.5
234,507 - EX28DRAFT_0271 0.89 +1.7
234,576 + +0.8
234,632 + +1.2
234,671 + +0.9
234,688 + -1.1
234,805 - +0.7
234,819 + -0.3
234,819 + +0.0
234,821 + +0.2
234,825 + +0.5
234,905 + +0.4
234,973 + -3.1
235,021 - -1.4
235,159 + EX28DRAFT_0272 0.39 -0.8
235,233 - EX28DRAFT_0272 0.54 -0.6
235,562 - EX28DRAFT_0273 0.12 -0.4
235,631 + EX28DRAFT_0273 0.25 -0.5
235,637 + EX28DRAFT_0273 0.26 +0.4

Or see this region's nucleotide sequence