Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0173 and EX28DRAFT_0174 overlap by 1 nucleotides EX28DRAFT_0174 and EX28DRAFT_0175 are separated by 3 nucleotides
EX28DRAFT_0173: EX28DRAFT_0173 - Leucyl aminopeptidase, at 122,496 to 123,914
_0173
EX28DRAFT_0174: EX28DRAFT_0174 - Asparaginase, at 123,914 to 124,870
_0174
EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193
_0175
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 123.130 kb on + strand, within EX28DRAFT_0173 at 123.131 kb on - strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.142 kb on + strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.143 kb on - strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.188 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.205 kb on + strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.206 kb on - strand, within EX28DRAFT_0173 at 123.648 kb on + strand, within EX28DRAFT_0173 at 123.839 kb on + strand at 123.896 kb on + strand at 123.896 kb on + strand at 123.897 kb on - strand at 123.905 kb on - strand at 123.905 kb on - strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.908 kb on + strand at 123.951 kb on + strand at 123.952 kb on - strand at 123.985 kb on - strand at 124.113 kb on - strand, within EX28DRAFT_0174 at 124.202 kb on - strand, within EX28DRAFT_0174 at 124.302 kb on + strand, within EX28DRAFT_0174 at 124.510 kb on + strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.511 kb on - strand, within EX28DRAFT_0174 at 124.578 kb on + strand, within EX28DRAFT_0174 at 124.660 kb on + strand, within EX28DRAFT_0174 at 124.735 kb on + strand, within EX28DRAFT_0174 at 124.875 kb on + strand at 124.876 kb on - strand at 124.952 kb on - strand at 124.957 kb on + strand at 124.958 kb on - strand at 124.958 kb on - strand at 124.996 kb on + strand at 125.072 kb on - strand, within EX28DRAFT_0175 at 125.119 kb on - strand, within EX28DRAFT_0175 at 125.218 kb on + strand, within EX28DRAFT_0175 at 125.356 kb on + strand, within EX28DRAFT_0175 at 125.515 kb on - strand, within EX28DRAFT_0175 at 125.557 kb on - strand, within EX28DRAFT_0175 at 125.557 kb on - strand, within EX28DRAFT_0175 at 125.580 kb on + strand, within EX28DRAFT_0175 at 125.580 kb on + strand, within EX28DRAFT_0175 at 125.581 kb on - strand, within EX28DRAFT_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 123,130 + EX28DRAFT_0173 0.45 -0.0 123,131 - EX28DRAFT_0173 0.45 -1.4 123,142 + EX28DRAFT_0173 0.46 +1.2 123,142 + EX28DRAFT_0173 0.46 -1.8 123,143 - EX28DRAFT_0173 0.46 +0.3 123,143 - EX28DRAFT_0173 0.46 +0.5 123,143 - EX28DRAFT_0173 0.46 -1.2 123,143 - EX28DRAFT_0173 0.46 -0.3 123,143 - EX28DRAFT_0173 0.46 +1.8 123,188 + EX28DRAFT_0173 0.49 -0.8 123,188 + EX28DRAFT_0173 0.49 -0.1 123,205 + EX28DRAFT_0173 0.50 -0.4 123,205 + EX28DRAFT_0173 0.50 -0.3 123,206 - EX28DRAFT_0173 0.50 +0.5 123,206 - EX28DRAFT_0173 0.50 -0.4 123,648 + EX28DRAFT_0173 0.81 -0.7 123,839 + -1.3 123,896 + -0.2 123,896 + -2.9 123,897 - -1.4 123,905 - +0.9 123,905 - +0.9 123,908 + -0.2 123,908 + +0.8 123,908 + -0.8 123,951 + -1.0 123,952 - -0.4 123,985 - -0.5 124,113 - EX28DRAFT_0174 0.21 +0.2 124,202 - EX28DRAFT_0174 0.30 +0.3 124,302 + EX28DRAFT_0174 0.41 -0.6 124,510 + EX28DRAFT_0174 0.62 +1.3 124,511 - EX28DRAFT_0174 0.62 +0.2 124,511 - EX28DRAFT_0174 0.62 -0.2 124,511 - EX28DRAFT_0174 0.62 +1.1 124,511 - EX28DRAFT_0174 0.62 -0.2 124,578 + EX28DRAFT_0174 0.69 +1.2 124,660 + EX28DRAFT_0174 0.78 -0.9 124,735 + EX28DRAFT_0174 0.86 +0.8 124,875 + +0.6 124,876 - -0.2 124,952 - -0.5 124,957 + +0.2 124,958 - -0.6 124,958 - -0.7 124,996 + +0.2 125,072 - EX28DRAFT_0175 0.15 +0.1 125,119 - EX28DRAFT_0175 0.19 -0.7 125,218 + EX28DRAFT_0175 0.26 -0.3 125,356 + EX28DRAFT_0175 0.37 +0.6 125,515 - EX28DRAFT_0175 0.49 +0.5 125,557 - EX28DRAFT_0175 0.52 -0.5 125,557 - EX28DRAFT_0175 0.52 -0.2 125,580 + EX28DRAFT_0175 0.53 -0.7 125,580 + EX28DRAFT_0175 0.53 +0.3 125,581 - EX28DRAFT_0175 0.54 -0.4
Or see this region's nucleotide sequence