Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0124

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0123 and EX28DRAFT_0124 are separated by 1 nucleotidesEX28DRAFT_0124 and EX28DRAFT_0125 are separated by 156 nucleotidesEX28DRAFT_0125 and EX28DRAFT_0126 are separated by 169 nucleotides EX28DRAFT_0123: EX28DRAFT_0123 - Large extracellular alpha-helical protein, at 61,574 to 66,526 _0123 EX28DRAFT_0124: EX28DRAFT_0124 - penicillin-binding protein 1C, at 66,528 to 68,852 _0124 EX28DRAFT_0125: EX28DRAFT_0125 - nucleoside diphosphate kinase (EC 2.7.4.6), at 69,009 to 69,440 _0125 EX28DRAFT_0126: EX28DRAFT_0126 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 69,610 to 70,776 _0126 Position (kb) 66 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 65.760 kb on - strand, within EX28DRAFT_0123at 65.760 kb on - strand, within EX28DRAFT_0123at 65.760 kb on - strand, within EX28DRAFT_0123at 65.785 kb on + strand, within EX28DRAFT_0123at 65.785 kb on + strand, within EX28DRAFT_0123at 65.785 kb on + strand, within EX28DRAFT_0123at 65.941 kb on + strand, within EX28DRAFT_0123at 66.118 kb on + strandat 66.119 kb on - strandat 66.119 kb on - strandat 66.404 kb on + strandat 66.434 kb on + strandat 66.463 kb on + strandat 66.463 kb on + strandat 66.463 kb on + strandat 66.463 kb on + strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.464 kb on - strandat 66.467 kb on + strandat 66.468 kb on - strandat 66.809 kb on - strand, within EX28DRAFT_0124at 67.006 kb on - strand, within EX28DRAFT_0124at 67.066 kb on - strand, within EX28DRAFT_0124at 67.090 kb on + strand, within EX28DRAFT_0124at 67.090 kb on + strand, within EX28DRAFT_0124at 67.090 kb on + strand, within EX28DRAFT_0124at 67.090 kb on + strand, within EX28DRAFT_0124at 67.091 kb on - strand, within EX28DRAFT_0124at 67.091 kb on - strand, within EX28DRAFT_0124at 67.091 kb on - strand, within EX28DRAFT_0124at 67.096 kb on - strand, within EX28DRAFT_0124at 67.144 kb on + strand, within EX28DRAFT_0124at 67.240 kb on + strand, within EX28DRAFT_0124at 67.458 kb on - strand, within EX28DRAFT_0124at 67.491 kb on - strand, within EX28DRAFT_0124at 67.493 kb on + strand, within EX28DRAFT_0124at 67.568 kb on + strand, within EX28DRAFT_0124at 67.577 kb on + strand, within EX28DRAFT_0124at 67.647 kb on + strand, within EX28DRAFT_0124at 68.198 kb on - strand, within EX28DRAFT_0124at 68.198 kb on - strand, within EX28DRAFT_0124at 68.949 kb on - strandat 68.950 kb on + strandat 68.975 kb on + strandat 69.327 kb on + strand, within EX28DRAFT_0125at 69.439 kb on - strandat 69.457 kb on - strandat 69.464 kb on - strandat 69.472 kb on - strandat 69.513 kb on + strandat 69.514 kb on - strandat 69.587 kb on + strandat 69.609 kb on + strandat 69.610 kb on - strandat 69.620 kb on + strandat 69.620 kb on + strandat 69.628 kb on - strandat 69.718 kb on - strandat 69.770 kb on - strand, within EX28DRAFT_0126at 69.775 kb on + strand, within EX28DRAFT_0126

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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65,760 - EX28DRAFT_0123 0.85 +0.1
65,760 - EX28DRAFT_0123 0.85 +0.6
65,760 - EX28DRAFT_0123 0.85 +0.3
65,785 + EX28DRAFT_0123 0.85 -1.1
65,785 + EX28DRAFT_0123 0.85 +0.3
65,785 + EX28DRAFT_0123 0.85 +0.8
65,941 + EX28DRAFT_0123 0.88 +0.2
66,118 + -1.4
66,119 - -1.7
66,119 - +0.3
66,404 + +2.6
66,434 + +0.6
66,463 + -2.6
66,463 + -1.1
66,463 + +0.8
66,463 + +0.8
66,464 - -0.2
66,464 - +0.9
66,464 - -0.4
66,464 - +0.2
66,464 - -0.4
66,464 - +0.2
66,464 - +0.4
66,464 - +0.4
66,464 - +0.4
66,467 + -0.0
66,468 - +0.2
66,809 - EX28DRAFT_0124 0.12 -0.8
67,006 - EX28DRAFT_0124 0.21 -1.0
67,066 - EX28DRAFT_0124 0.23 +0.3
67,090 + EX28DRAFT_0124 0.24 -0.6
67,090 + EX28DRAFT_0124 0.24 +0.1
67,090 + EX28DRAFT_0124 0.24 +0.4
67,090 + EX28DRAFT_0124 0.24 -0.6
67,091 - EX28DRAFT_0124 0.24 +0.1
67,091 - EX28DRAFT_0124 0.24 +0.2
67,091 - EX28DRAFT_0124 0.24 -1.2
67,096 - EX28DRAFT_0124 0.24 +0.2
67,144 + EX28DRAFT_0124 0.26 +2.9
67,240 + EX28DRAFT_0124 0.31 -0.3
67,458 - EX28DRAFT_0124 0.40 -0.1
67,491 - EX28DRAFT_0124 0.41 -0.6
67,493 + EX28DRAFT_0124 0.42 +0.5
67,568 + EX28DRAFT_0124 0.45 +0.2
67,577 + EX28DRAFT_0124 0.45 -1.0
67,647 + EX28DRAFT_0124 0.48 -0.0
68,198 - EX28DRAFT_0124 0.72 -0.9
68,198 - EX28DRAFT_0124 0.72 -0.8
68,949 - +1.2
68,950 + +1.0
68,975 + +0.6
69,327 + EX28DRAFT_0125 0.74 -1.4
69,439 - -0.7
69,457 - -1.1
69,464 - -3.0
69,472 - +0.3
69,513 + -3.1
69,514 - -1.8
69,587 + +0.3
69,609 + -0.2
69,610 - -0.3
69,620 + -0.3
69,620 + -0.3
69,628 - -1.7
69,718 - +0.5
69,770 - EX28DRAFT_0126 0.14 +0.1
69,775 + EX28DRAFT_0126 0.14 -0.8

Or see this region's nucleotide sequence