Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01376 and CCNA_R0033 are separated by 218 nucleotides CCNA_R0033 and CCNA_R0034 are separated by 135 nucleotides CCNA_R0034 and CCNA_01377 are separated by 32 nucleotides CCNA_01377 and CCNA_01378 are separated by 295 nucleotides
CCNA_01376: CCNA_01376 - glutathione S-transferase, at 1,490,853 to 1,491,557
_01376
CCNA_R0033: CCNA_R0033 - tRNA-Asn, at 1,491,776 to 1,491,850
_R0033
CCNA_R0034: CCNA_R0034 - tRNA-Asn, at 1,491,986 to 1,492,060
_R0034
CCNA_01377: CCNA_01377 - hypothetical protein, at 1,492,093 to 1,492,239
_01377
CCNA_01378: CCNA_01378 - protein-L-isoaspartate O-methyltransferase, at 1,492,535 to 1,493,107
_01378
Position (kb)
1491
1492 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1490.782 kb on - strand at 1490.813 kb on + strand at 1490.821 kb on - strand at 1490.857 kb on - strand at 1490.860 kb on + strand at 1490.880 kb on + strand at 1490.885 kb on + strand at 1490.885 kb on + strand at 1490.888 kb on - strand at 1490.893 kb on + strand at 1490.926 kb on - strand, within CCNA_01376 at 1490.926 kb on - strand, within CCNA_01376 at 1490.962 kb on + strand, within CCNA_01376 at 1490.962 kb on + strand, within CCNA_01376 at 1490.964 kb on - strand, within CCNA_01376 at 1490.966 kb on + strand, within CCNA_01376 at 1490.984 kb on - strand, within CCNA_01376 at 1490.989 kb on - strand, within CCNA_01376 at 1491.007 kb on - strand, within CCNA_01376 at 1491.014 kb on + strand, within CCNA_01376 at 1491.033 kb on + strand, within CCNA_01376 at 1491.113 kb on + strand, within CCNA_01376 at 1491.113 kb on + strand, within CCNA_01376 at 1491.121 kb on - strand, within CCNA_01376 at 1491.121 kb on - strand, within CCNA_01376 at 1491.169 kb on - strand, within CCNA_01376 at 1491.187 kb on + strand, within CCNA_01376 at 1491.207 kb on - strand, within CCNA_01376 at 1491.232 kb on + strand, within CCNA_01376 at 1491.320 kb on + strand, within CCNA_01376 at 1491.328 kb on - strand, within CCNA_01376 at 1491.364 kb on + strand, within CCNA_01376 at 1491.383 kb on + strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.391 kb on - strand, within CCNA_01376 at 1491.392 kb on - strand, within CCNA_01376 at 1491.420 kb on + strand, within CCNA_01376 at 1491.428 kb on - strand, within CCNA_01376 at 1491.494 kb on + strand at 1491.522 kb on + strand at 1491.530 kb on - strand at 1491.536 kb on + strand at 1491.556 kb on + strand at 1491.581 kb on - strand at 1491.774 kb on + strand at 1491.788 kb on + strand, within CCNA_R0033 at 1491.796 kb on + strand, within CCNA_R0033 at 1491.850 kb on + strand at 1492.081 kb on - strand at 1492.123 kb on - strand, within CCNA_01377 at 1492.181 kb on + strand, within CCNA_01377 at 1492.181 kb on + strand, within CCNA_01377 at 1492.186 kb on + strand, within CCNA_01377 at 1492.191 kb on + strand, within CCNA_01377 at 1492.191 kb on + strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.199 kb on - strand, within CCNA_01377 at 1492.221 kb on - strand, within CCNA_01377 at 1492.312 kb on - strand at 1492.324 kb on + strand at 1492.327 kb on - strand at 1492.334 kb on + strand at 1492.375 kb on + strand at 1492.375 kb on + strand at 1492.388 kb on + strand at 1492.494 kb on + strand at 1492.494 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.495 kb on + strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.502 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.503 kb on - strand at 1492.513 kb on + strand at 1492.521 kb on - strand at 1492.521 kb on - strand at 1492.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,490,782 - -1.5 1,490,813 + -2.3 1,490,821 - -0.4 1,490,857 - -1.3 1,490,860 + +0.6 1,490,880 + +0.2 1,490,885 + +1.0 1,490,885 + +0.6 1,490,888 - -1.5 1,490,893 + +1.1 1,490,926 - CCNA_01376 0.10 -1.2 1,490,926 - CCNA_01376 0.10 -0.6 1,490,962 + CCNA_01376 0.15 -1.4 1,490,962 + CCNA_01376 0.15 +0.7 1,490,964 - CCNA_01376 0.16 +0.9 1,490,966 + CCNA_01376 0.16 +0.5 1,490,984 - CCNA_01376 0.19 -1.3 1,490,989 - CCNA_01376 0.19 -1.7 1,491,007 - CCNA_01376 0.22 +1.0 1,491,014 + CCNA_01376 0.23 -0.2 1,491,033 + CCNA_01376 0.26 -2.7 1,491,113 + CCNA_01376 0.37 +0.1 1,491,113 + CCNA_01376 0.37 +0.9 1,491,121 - CCNA_01376 0.38 +0.4 1,491,121 - CCNA_01376 0.38 -0.8 1,491,169 - CCNA_01376 0.45 -0.7 1,491,187 + CCNA_01376 0.47 +0.6 1,491,207 - CCNA_01376 0.50 +0.2 1,491,232 + CCNA_01376 0.54 +0.2 1,491,320 + CCNA_01376 0.66 +1.0 1,491,328 - CCNA_01376 0.67 -0.7 1,491,364 + CCNA_01376 0.72 +1.0 1,491,383 + CCNA_01376 0.75 +0.8 1,491,391 - CCNA_01376 0.76 -0.1 1,491,391 - CCNA_01376 0.76 -0.6 1,491,391 - CCNA_01376 0.76 -0.8 1,491,391 - CCNA_01376 0.76 -1.1 1,491,392 - CCNA_01376 0.76 -0.7 1,491,420 + CCNA_01376 0.80 -0.6 1,491,428 - CCNA_01376 0.82 -0.6 1,491,494 + +0.2 1,491,522 + +0.5 1,491,530 - -1.5 1,491,536 + -0.0 1,491,556 + +1.9 1,491,581 - +0.0 1,491,774 + +0.2 1,491,788 + CCNA_R0033 0.16 +1.3 1,491,796 + CCNA_R0033 0.27 -0.1 1,491,850 + +0.8 1,492,081 - -2.8 1,492,123 - CCNA_01377 0.20 -0.2 1,492,181 + CCNA_01377 0.60 -1.2 1,492,181 + CCNA_01377 0.60 +0.6 1,492,186 + CCNA_01377 0.63 +0.8 1,492,191 + CCNA_01377 0.67 -0.3 1,492,191 + CCNA_01377 0.67 -1.8 1,492,199 - CCNA_01377 0.72 +0.6 1,492,199 - CCNA_01377 0.72 +0.8 1,492,199 - CCNA_01377 0.72 -1.0 1,492,199 - CCNA_01377 0.72 +0.5 1,492,199 - CCNA_01377 0.72 -1.5 1,492,199 - CCNA_01377 0.72 -0.5 1,492,221 - CCNA_01377 0.87 +0.4 1,492,312 - +0.5 1,492,324 + +0.7 1,492,327 - -0.3 1,492,334 + +0.8 1,492,375 + -0.8 1,492,375 + -0.8 1,492,388 + +0.5 1,492,494 + +0.4 1,492,494 + +0.6 1,492,495 + -0.0 1,492,495 + -0.8 1,492,495 + +1.0 1,492,495 + +0.7 1,492,495 + -0.5 1,492,495 + +0.3 1,492,495 + +0.6 1,492,495 + -0.3 1,492,502 - +0.0 1,492,502 - +1.2 1,492,502 - +0.8 1,492,502 - -1.3 1,492,503 - -0.8 1,492,503 - -0.3 1,492,503 - -1.7 1,492,503 - -0.8 1,492,503 - -0.8 1,492,503 - -0.7 1,492,513 + -0.1 1,492,521 - -2.1 1,492,521 - -1.2 1,492,569 - -0.3
Or see this region's nucleotide sequence