Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02742 and CCNA_03975 overlap by 4 nucleotides CCNA_03975 and CCNA_02743 overlap by 1 nucleotides
CCNA_02742: CCNA_02742 - hypothetical protein, at 2,902,466 to 2,903,737
_02742
CCNA_03975: CCNA_03975 - hypothetical protein, at 2,903,734 to 2,903,886
_03975
CCNA_02743: CCNA_02743 - TonB dependent receptor, at 2,903,886 to 2,906,294
_02743
Position (kb)
2903
2904 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2902.741 kb on + strand, within CCNA_02742 at 2902.791 kb on + strand, within CCNA_02742 at 2902.825 kb on + strand, within CCNA_02742 at 2902.835 kb on + strand, within CCNA_02742 at 2902.835 kb on + strand, within CCNA_02742 at 2902.868 kb on + strand, within CCNA_02742 at 2902.876 kb on - strand, within CCNA_02742 at 2902.877 kb on - strand, within CCNA_02742 at 2902.882 kb on + strand, within CCNA_02742 at 2902.984 kb on + strand, within CCNA_02742 at 2902.984 kb on - strand, within CCNA_02742 at 2903.270 kb on + strand, within CCNA_02742 at 2903.270 kb on + strand, within CCNA_02742 at 2903.278 kb on - strand, within CCNA_02742 at 2903.278 kb on - strand, within CCNA_02742 at 2903.320 kb on + strand, within CCNA_02742 at 2903.365 kb on + strand, within CCNA_02742 at 2903.459 kb on - strand, within CCNA_02742 at 2903.477 kb on + strand, within CCNA_02742 at 2903.522 kb on - strand, within CCNA_02742 at 2903.640 kb on + strand at 2903.660 kb on + strand at 2903.746 kb on + strand at 2903.799 kb on + strand, within CCNA_03975 at 2903.897 kb on + strand at 2903.903 kb on + strand at 2903.964 kb on - strand at 2903.975 kb on + strand at 2903.991 kb on - strand at 2904.015 kb on + strand at 2904.016 kb on + strand at 2904.016 kb on + strand at 2904.022 kb on - strand at 2904.046 kb on + strand at 2904.067 kb on + strand at 2904.067 kb on + strand at 2904.067 kb on + strand at 2904.075 kb on - strand at 2904.075 kb on - strand at 2904.081 kb on + strand at 2904.081 kb on + strand at 2904.081 kb on + strand at 2904.086 kb on + strand at 2904.131 kb on + strand, within CCNA_02743 at 2904.133 kb on - strand, within CCNA_02743 at 2904.135 kb on + strand, within CCNA_02743 at 2904.138 kb on - strand, within CCNA_02743 at 2904.143 kb on - strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.147 kb on + strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.155 kb on - strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.162 kb on + strand, within CCNA_02743 at 2904.170 kb on - strand, within CCNA_02743 at 2904.170 kb on - strand, within CCNA_02743 at 2904.188 kb on - strand, within CCNA_02743 at 2904.188 kb on - strand, within CCNA_02743 at 2904.190 kb on + strand, within CCNA_02743 at 2904.247 kb on + strand, within CCNA_02743 at 2904.254 kb on - strand, within CCNA_02743 at 2904.254 kb on - strand, within CCNA_02743 at 2904.265 kb on - strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.268 kb on + strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.276 kb on - strand, within CCNA_02743 at 2904.281 kb on - strand, within CCNA_02743 at 2904.298 kb on + strand, within CCNA_02743 at 2904.305 kb on - strand, within CCNA_02743 at 2904.305 kb on - strand, within CCNA_02743 at 2904.311 kb on - strand, within CCNA_02743 at 2904.312 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.369 kb on + strand, within CCNA_02743 at 2904.370 kb on + strand, within CCNA_02743 at 2904.370 kb on + strand, within CCNA_02743 at 2904.377 kb on - strand, within CCNA_02743 at 2904.412 kb on - strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.418 kb on + strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.426 kb on - strand, within CCNA_02743 at 2904.427 kb on + strand, within CCNA_02743 at 2904.432 kb on + strand, within CCNA_02743 at 2904.444 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.504 kb on + strand, within CCNA_02743 at 2904.511 kb on + strand, within CCNA_02743 at 2904.523 kb on + strand, within CCNA_02743 at 2904.532 kb on - strand, within CCNA_02743 at 2904.548 kb on - strand, within CCNA_02743 at 2904.556 kb on + strand, within CCNA_02743 at 2904.559 kb on - strand, within CCNA_02743 at 2904.561 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.566 kb on + strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.574 kb on - strand, within CCNA_02743 at 2904.583 kb on + strand, within CCNA_02743 at 2904.587 kb on + strand, within CCNA_02743 at 2904.611 kb on + strand, within CCNA_02743 at 2904.614 kb on - strand, within CCNA_02743 at 2904.630 kb on + strand, within CCNA_02743 at 2904.649 kb on - strand, within CCNA_02743 at 2904.653 kb on + strand, within CCNA_02743 at 2904.653 kb on - strand, within CCNA_02743 at 2904.708 kb on - strand, within CCNA_02743 at 2904.726 kb on + strand, within CCNA_02743 at 2904.734 kb on - strand, within CCNA_02743 at 2904.736 kb on + strand, within CCNA_02743 at 2904.762 kb on + strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.782 kb on - strand, within CCNA_02743 at 2904.797 kb on + strand, within CCNA_02743 at 2904.797 kb on + strand, within CCNA_02743 at 2904.805 kb on - strand, within CCNA_02743 at 2904.859 kb on - strand, within CCNA_02743
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,902,741 + CCNA_02742 0.22 -0.2 2,902,791 + CCNA_02742 0.26 +0.6 2,902,825 + CCNA_02742 0.28 -0.0 2,902,835 + CCNA_02742 0.29 +0.6 2,902,835 + CCNA_02742 0.29 +0.2 2,902,868 + CCNA_02742 0.32 +0.2 2,902,876 - CCNA_02742 0.32 -0.2 2,902,877 - CCNA_02742 0.32 +0.5 2,902,882 + CCNA_02742 0.33 +0.2 2,902,984 + CCNA_02742 0.41 -0.4 2,902,984 - CCNA_02742 0.41 +0.0 2,903,270 + CCNA_02742 0.63 +0.3 2,903,270 + CCNA_02742 0.63 -0.1 2,903,278 - CCNA_02742 0.64 -1.4 2,903,278 - CCNA_02742 0.64 -0.1 2,903,320 + CCNA_02742 0.67 +0.3 2,903,365 + CCNA_02742 0.71 -0.1 2,903,459 - CCNA_02742 0.78 +0.2 2,903,477 + CCNA_02742 0.79 +0.2 2,903,522 - CCNA_02742 0.83 -0.5 2,903,640 + +0.2 2,903,660 + +0.4 2,903,746 + +0.4 2,903,799 + CCNA_03975 0.42 -1.1 2,903,897 + -0.1 2,903,903 + +0.1 2,903,964 - -0.4 2,903,975 + -0.9 2,903,991 - +0.2 2,904,015 + +0.2 2,904,016 + -0.2 2,904,016 + -2.3 2,904,022 - -0.0 2,904,046 + -0.5 2,904,067 + +1.0 2,904,067 + -1.4 2,904,067 + -1.3 2,904,075 - -1.6 2,904,075 - +0.7 2,904,081 + -0.9 2,904,081 + -0.2 2,904,081 + -0.0 2,904,086 + +0.3 2,904,131 + CCNA_02743 0.10 +0.2 2,904,133 - CCNA_02743 0.10 -0.4 2,904,135 + CCNA_02743 0.10 -0.6 2,904,138 - CCNA_02743 0.10 +0.4 2,904,143 - CCNA_02743 0.11 -0.0 2,904,147 + CCNA_02743 0.11 -0.6 2,904,147 + CCNA_02743 0.11 -0.6 2,904,147 + CCNA_02743 0.11 +0.6 2,904,147 + CCNA_02743 0.11 -1.6 2,904,147 + CCNA_02743 0.11 +0.2 2,904,147 + CCNA_02743 0.11 +0.1 2,904,147 + CCNA_02743 0.11 -0.0 2,904,147 + CCNA_02743 0.11 -2.3 2,904,155 - CCNA_02743 0.11 +0.2 2,904,155 - CCNA_02743 0.11 -0.2 2,904,155 - CCNA_02743 0.11 -0.5 2,904,155 - CCNA_02743 0.11 +0.0 2,904,155 - CCNA_02743 0.11 +0.4 2,904,155 - CCNA_02743 0.11 +1.4 2,904,155 - CCNA_02743 0.11 -0.2 2,904,155 - CCNA_02743 0.11 +0.2 2,904,162 + CCNA_02743 0.11 -0.1 2,904,162 + CCNA_02743 0.11 +0.1 2,904,162 + CCNA_02743 0.11 -0.3 2,904,170 - CCNA_02743 0.12 +0.2 2,904,170 - CCNA_02743 0.12 +0.6 2,904,188 - CCNA_02743 0.13 -0.3 2,904,188 - CCNA_02743 0.13 +0.4 2,904,190 + CCNA_02743 0.13 -1.2 2,904,247 + CCNA_02743 0.15 -0.0 2,904,254 - CCNA_02743 0.15 -1.1 2,904,254 - CCNA_02743 0.15 +0.3 2,904,265 - CCNA_02743 0.16 -0.3 2,904,268 + CCNA_02743 0.16 +0.3 2,904,268 + CCNA_02743 0.16 +1.6 2,904,268 + CCNA_02743 0.16 +0.4 2,904,276 - CCNA_02743 0.16 +0.1 2,904,276 - CCNA_02743 0.16 +0.6 2,904,276 - CCNA_02743 0.16 +0.2 2,904,276 - CCNA_02743 0.16 -1.9 2,904,276 - CCNA_02743 0.16 -0.5 2,904,276 - CCNA_02743 0.16 +1.1 2,904,276 - CCNA_02743 0.16 +0.3 2,904,276 - CCNA_02743 0.16 +1.2 2,904,281 - CCNA_02743 0.16 +0.6 2,904,298 + CCNA_02743 0.17 +0.9 2,904,305 - CCNA_02743 0.17 +0.1 2,904,305 - CCNA_02743 0.17 +1.3 2,904,311 - CCNA_02743 0.18 +1.2 2,904,312 + CCNA_02743 0.18 +1.8 2,904,369 + CCNA_02743 0.20 +0.3 2,904,369 + CCNA_02743 0.20 +0.6 2,904,369 + CCNA_02743 0.20 +0.0 2,904,370 + CCNA_02743 0.20 -0.8 2,904,370 + CCNA_02743 0.20 -0.2 2,904,377 - CCNA_02743 0.20 +0.3 2,904,412 - CCNA_02743 0.22 -0.0 2,904,418 + CCNA_02743 0.22 +0.4 2,904,418 + CCNA_02743 0.22 -0.0 2,904,418 + CCNA_02743 0.22 +0.2 2,904,418 + CCNA_02743 0.22 +0.6 2,904,418 + CCNA_02743 0.22 -0.0 2,904,426 - CCNA_02743 0.22 -1.4 2,904,426 - CCNA_02743 0.22 -1.0 2,904,426 - CCNA_02743 0.22 +0.6 2,904,426 - CCNA_02743 0.22 +0.9 2,904,426 - CCNA_02743 0.22 +0.4 2,904,426 - CCNA_02743 0.22 -0.1 2,904,426 - CCNA_02743 0.22 +0.3 2,904,427 + CCNA_02743 0.22 +0.8 2,904,432 + CCNA_02743 0.23 -0.6 2,904,444 + CCNA_02743 0.23 +0.2 2,904,504 + CCNA_02743 0.26 -0.8 2,904,504 + CCNA_02743 0.26 -0.7 2,904,504 + CCNA_02743 0.26 -0.5 2,904,511 + CCNA_02743 0.26 -1.0 2,904,523 + CCNA_02743 0.26 +0.0 2,904,532 - CCNA_02743 0.27 -1.4 2,904,548 - CCNA_02743 0.27 +1.6 2,904,556 + CCNA_02743 0.28 -0.3 2,904,559 - CCNA_02743 0.28 -0.5 2,904,561 + CCNA_02743 0.28 +0.5 2,904,566 + CCNA_02743 0.28 +0.7 2,904,566 + CCNA_02743 0.28 +0.2 2,904,566 + CCNA_02743 0.28 +0.3 2,904,574 - CCNA_02743 0.29 +1.6 2,904,574 - CCNA_02743 0.29 -0.3 2,904,574 - CCNA_02743 0.29 -1.1 2,904,583 + CCNA_02743 0.29 -1.2 2,904,587 + CCNA_02743 0.29 +0.6 2,904,611 + CCNA_02743 0.30 +0.1 2,904,614 - CCNA_02743 0.30 +0.2 2,904,630 + CCNA_02743 0.31 -0.3 2,904,649 - CCNA_02743 0.32 -0.4 2,904,653 + CCNA_02743 0.32 +0.5 2,904,653 - CCNA_02743 0.32 +0.3 2,904,708 - CCNA_02743 0.34 +1.0 2,904,726 + CCNA_02743 0.35 +0.2 2,904,734 - CCNA_02743 0.35 -1.4 2,904,736 + CCNA_02743 0.35 +0.1 2,904,762 + CCNA_02743 0.36 -1.1 2,904,782 - CCNA_02743 0.37 -1.0 2,904,782 - CCNA_02743 0.37 +0.5 2,904,782 - CCNA_02743 0.37 +0.6 2,904,797 + CCNA_02743 0.38 -0.6 2,904,797 + CCNA_02743 0.38 +0.0 2,904,805 - CCNA_02743 0.38 +1.0 2,904,859 - CCNA_02743 0.40 +1.5
Or see this region's nucleotide sequence