Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03939

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00789 and CCNA_00790 are separated by 175 nucleotidesCCNA_00790 and CCNA_03939 are separated by 318 nucleotidesCCNA_03939 and CCNA_00792 are separated by 340 nucleotides CCNA_00789: CCNA_00789 - hypoxia transcriptional regulator FixK, at 852,873 to 853,523 _00789 CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076 _00790 CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685 _03939 CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210 _00792 Position (kb) 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.402 kb on + strand, within CCNA_00789at 853.419 kb on + strand, within CCNA_00789at 853.459 kb on - strandat 853.459 kb on - strandat 853.461 kb on + strandat 853.461 kb on + strandat 853.461 kb on + strandat 853.471 kb on + strandat 853.474 kb on - strandat 853.482 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.590 kb on + strandat 853.598 kb on - strandat 853.598 kb on - strandat 853.600 kb on - strandat 853.607 kb on + strandat 853.607 kb on + strandat 853.658 kb on + strandat 853.677 kb on + strandat 853.709 kb on + strandat 853.725 kb on + strandat 853.764 kb on + strand, within CCNA_00790at 853.766 kb on + strand, within CCNA_00790at 853.766 kb on - strand, within CCNA_00790at 853.771 kb on + strand, within CCNA_00790at 853.779 kb on - strand, within CCNA_00790at 853.779 kb on - strand, within CCNA_00790at 853.809 kb on + strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.819 kb on - strand, within CCNA_00790at 853.850 kb on - strand, within CCNA_00790at 853.850 kb on - strand, within CCNA_00790at 853.856 kb on + strand, within CCNA_00790at 853.912 kb on + strand, within CCNA_00790at 853.912 kb on - strand, within CCNA_00790at 853.922 kb on - strand, within CCNA_00790at 853.964 kb on - strand, within CCNA_00790at 853.988 kb on + strand, within CCNA_00790at 853.996 kb on - strand, within CCNA_00790at 854.006 kb on - strand, within CCNA_00790at 854.021 kb on - strand, within CCNA_00790at 854.038 kb on - strand, within CCNA_00790at 854.078 kb on - strandat 854.078 kb on - strandat 854.245 kb on - strandat 854.270 kb on - strandat 854.270 kb on - strandat 854.305 kb on - strandat 854.314 kb on + strandat 854.326 kb on + strandat 854.326 kb on + strandat 854.331 kb on + strandat 854.331 kb on + strandat 854.333 kb on + strandat 854.334 kb on - strandat 854.334 kb on - strandat 854.334 kb on - strandat 854.344 kb on + strandat 854.344 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.349 kb on + strandat 854.357 kb on - strandat 854.362 kb on - strandat 854.383 kb on - strandat 854.389 kb on - strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.405 kb on + strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.413 kb on - strandat 854.429 kb on + strand, within CCNA_03939at 854.429 kb on + strand, within CCNA_03939at 854.437 kb on - strand, within CCNA_03939at 854.439 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.499 kb on + strand, within CCNA_03939at 854.504 kb on + strand, within CCNA_03939at 854.504 kb on + strand, within CCNA_03939at 854.511 kb on + strand, within CCNA_03939at 854.517 kb on - strand, within CCNA_03939at 854.519 kb on - strand, within CCNA_03939at 854.536 kb on + strand, within CCNA_03939at 854.538 kb on - strand, within CCNA_03939at 854.686 kb on + strandat 854.706 kb on + strandat 854.747 kb on + strandat 854.768 kb on + strandat 854.776 kb on - strandat 854.796 kb on + strandat 854.818 kb on - strandat 854.820 kb on - strandat 854.823 kb on - strandat 854.844 kb on - strandat 854.867 kb on + strandat 854.875 kb on - strandat 854.892 kb on + strandat 854.948 kb on + strandat 854.977 kb on + strandat 855.012 kb on - strandat 855.023 kb on + strandat 855.033 kb on - strandat 855.067 kb on - strandat 855.067 kb on - strandat 855.144 kb on + strandat 855.154 kb on + strand, within CCNA_00792at 855.162 kb on - strand, within CCNA_00792at 855.162 kb on - strand, within CCNA_00792at 855.162 kb on - strand, within CCNA_00792at 855.178 kb on + strand, within CCNA_00792at 855.250 kb on - strand, within CCNA_00792at 855.250 kb on - strand, within CCNA_00792at 855.275 kb on + strand, within CCNA_00792at 855.276 kb on + strand, within CCNA_00792at 855.278 kb on - strand, within CCNA_00792at 855.278 kb on - strand, within CCNA_00792at 855.278 kb on - strand, within CCNA_00792at 855.293 kb on + strand, within CCNA_00792at 855.293 kb on + strand, within CCNA_00792at 855.301 kb on - strand, within CCNA_00792at 855.324 kb on - strand, within CCNA_00792at 855.347 kb on + strand, within CCNA_00792at 855.360 kb on - strand, within CCNA_00792at 855.362 kb on + strand, within CCNA_00792at 855.365 kb on - strand, within CCNA_00792at 855.370 kb on - strand, within CCNA_00792at 855.407 kb on - strand, within CCNA_00792at 855.475 kb on + strand, within CCNA_00792at 855.475 kb on + strand, within CCNA_00792at 855.483 kb on - strand, within CCNA_00792at 855.495 kb on + strand, within CCNA_00792at 855.495 kb on + strand, within CCNA_00792at 855.495 kb on + strand, within CCNA_00792at 855.505 kb on + strand, within CCNA_00792at 855.513 kb on - strand, within CCNA_00792at 855.572 kb on - strand, within CCNA_00792at 855.603 kb on + strand, within CCNA_00792at 855.630 kb on - strand, within CCNA_00792at 855.658 kb on + strand, within CCNA_00792at 855.665 kb on + strand, within CCNA_00792

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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853,402 + CCNA_00789 0.81 -0.2
853,419 + CCNA_00789 0.84 -0.9
853,459 - +0.1
853,459 - -0.1
853,461 + -1.0
853,461 + -0.6
853,461 + +0.6
853,471 + +0.1
853,474 - -1.1
853,482 + -1.1
853,590 + -0.5
853,590 + +0.2
853,590 + -0.4
853,590 + -1.1
853,590 + +0.2
853,598 - -0.1
853,598 - -1.3
853,600 - -0.7
853,607 + -3.2
853,607 + +0.5
853,658 + +0.1
853,677 + -0.6
853,709 + -0.6
853,725 + -0.2
853,764 + CCNA_00790 0.17 -0.5
853,766 + CCNA_00790 0.18 +0.4
853,766 - CCNA_00790 0.18 +0.7
853,771 + CCNA_00790 0.19 +0.2
853,779 - CCNA_00790 0.21 +0.9
853,779 - CCNA_00790 0.21 -1.5
853,809 + CCNA_00790 0.29 -0.8
853,819 - CCNA_00790 0.32 -1.0
853,819 - CCNA_00790 0.32 -1.5
853,850 - CCNA_00790 0.40 -0.5
853,850 - CCNA_00790 0.40 +0.5
853,856 + CCNA_00790 0.42 +0.4
853,912 + CCNA_00790 0.56 +0.1
853,912 - CCNA_00790 0.56 -0.0
853,922 - CCNA_00790 0.59 -0.3
853,964 - CCNA_00790 0.70 -0.0
853,988 + CCNA_00790 0.76 -0.6
853,996 - CCNA_00790 0.79 -1.1
854,006 - CCNA_00790 0.81 +0.1
854,021 - CCNA_00790 0.85 -0.0
854,038 - CCNA_00790 0.90 +0.2
854,078 - -0.0
854,078 - +1.1
854,245 - -1.1
854,270 - +0.6
854,270 - +0.6
854,305 - +0.8
854,314 + -0.7
854,326 + -1.9
854,326 + +0.8
854,331 + +0.8
854,331 + +0.6
854,333 + -0.8
854,334 - -1.2
854,334 - -0.1
854,334 - -0.0
854,344 + +0.3
854,344 + -1.6
854,349 + -0.6
854,349 + -0.2
854,349 + -1.0
854,349 + -1.7
854,349 + -0.7
854,357 - +0.5
854,362 - +0.4
854,383 - -0.3
854,389 - -0.6
854,405 + -1.4
854,405 + -0.3
854,405 + -1.5
854,405 + -2.1
854,405 + -0.3
854,405 + -0.4
854,405 + +0.1
854,413 - +0.4
854,413 - -0.1
854,413 - -0.2
854,413 - -0.9
854,429 + CCNA_03939 0.12 -2.5
854,429 + CCNA_03939 0.12 -0.1
854,437 - CCNA_03939 0.14 +0.8
854,439 + CCNA_03939 0.15 -1.7
854,499 + CCNA_03939 0.36 -1.0
854,499 + CCNA_03939 0.36 -0.5
854,499 + CCNA_03939 0.36 +0.8
854,504 + CCNA_03939 0.37 -0.9
854,504 + CCNA_03939 0.37 -1.3
854,511 + CCNA_03939 0.40 -1.1
854,517 - CCNA_03939 0.42 +0.0
854,519 - CCNA_03939 0.43 -1.3
854,536 + CCNA_03939 0.48 +0.7
854,538 - CCNA_03939 0.49 -0.5
854,686 + -1.8
854,706 + -0.8
854,747 + -0.4
854,768 + -0.7
854,776 - -1.3
854,796 + -1.3
854,818 - -0.7
854,820 - +0.2
854,823 - -0.2
854,844 - +2.3
854,867 + +0.2
854,875 - +0.5
854,892 + -0.0
854,948 + +0.2
854,977 + -0.4
855,012 - +0.9
855,023 + -0.6
855,033 - -0.6
855,067 - -1.1
855,067 - -0.2
855,144 + -0.8
855,154 + CCNA_00792 0.11 +2.1
855,162 - CCNA_00792 0.11 -0.4
855,162 - CCNA_00792 0.11 +0.5
855,162 - CCNA_00792 0.11 +0.1
855,178 + CCNA_00792 0.13 +1.5
855,250 - CCNA_00792 0.19 +0.5
855,250 - CCNA_00792 0.19 +0.9
855,275 + CCNA_00792 0.21 +0.5
855,276 + CCNA_00792 0.21 +0.2
855,278 - CCNA_00792 0.21 -0.5
855,278 - CCNA_00792 0.21 +0.5
855,278 - CCNA_00792 0.21 -0.4
855,293 + CCNA_00792 0.23 -1.5
855,293 + CCNA_00792 0.23 -0.3
855,301 - CCNA_00792 0.23 +1.5
855,324 - CCNA_00792 0.25 +2.2
855,347 + CCNA_00792 0.27 -0.3
855,360 - CCNA_00792 0.28 -1.2
855,362 + CCNA_00792 0.28 +0.3
855,365 - CCNA_00792 0.29 -0.5
855,370 - CCNA_00792 0.29 +1.3
855,407 - CCNA_00792 0.32 +0.3
855,475 + CCNA_00792 0.38 -0.2
855,475 + CCNA_00792 0.38 -1.5
855,483 - CCNA_00792 0.39 +0.4
855,495 + CCNA_00792 0.40 +0.0
855,495 + CCNA_00792 0.40 -1.9
855,495 + CCNA_00792 0.40 +0.7
855,505 + CCNA_00792 0.40 -0.1
855,513 - CCNA_00792 0.41 -0.6
855,572 - CCNA_00792 0.46 +0.6
855,603 + CCNA_00792 0.49 +1.0
855,630 - CCNA_00792 0.51 +0.1
855,658 + CCNA_00792 0.53 -0.8
855,665 + CCNA_00792 0.54 +0.3

Or see this region's nucleotide sequence