Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03937

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00773 and CCNA_03937 are separated by 168 nucleotidesCCNA_03937 and CCNA_00774 are separated by 26 nucleotides CCNA_00773: CCNA_00773 - carboxypeptidase S, at 827,458 to 828,936 _00773 CCNA_03937: CCNA_03937 - hypothetical protein, at 829,105 to 829,290 _03937 CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426 _00774 Position (kb) 829 830Strain fitness (log2 ratio) -2 -1 0 1 2at 828.111 kb on - strand, within CCNA_00773at 828.123 kb on + strand, within CCNA_00773at 828.193 kb on + strand, within CCNA_00773at 828.200 kb on - strand, within CCNA_00773at 828.203 kb on + strand, within CCNA_00773at 828.217 kb on + strand, within CCNA_00773at 828.231 kb on + strand, within CCNA_00773at 828.237 kb on + strand, within CCNA_00773at 828.274 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.279 kb on + strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.287 kb on - strand, within CCNA_00773at 828.289 kb on + strand, within CCNA_00773at 828.303 kb on + strand, within CCNA_00773at 828.379 kb on - strand, within CCNA_00773at 828.409 kb on - strand, within CCNA_00773at 828.419 kb on - strand, within CCNA_00773at 828.432 kb on + strand, within CCNA_00773at 828.440 kb on - strand, within CCNA_00773at 828.458 kb on + strand, within CCNA_00773at 828.479 kb on - strand, within CCNA_00773at 828.489 kb on - strand, within CCNA_00773at 828.503 kb on - strand, within CCNA_00773at 828.509 kb on + strand, within CCNA_00773at 828.542 kb on + strand, within CCNA_00773at 828.577 kb on + strand, within CCNA_00773at 828.583 kb on - strand, within CCNA_00773at 828.588 kb on + strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.648 kb on - strand, within CCNA_00773at 828.651 kb on - strand, within CCNA_00773at 828.699 kb on + strand, within CCNA_00773at 828.726 kb on + strand, within CCNA_00773at 828.727 kb on + strand, within CCNA_00773at 828.730 kb on - strand, within CCNA_00773at 828.734 kb on - strand, within CCNA_00773at 828.737 kb on + strand, within CCNA_00773at 828.737 kb on + strand, within CCNA_00773at 828.747 kb on + strand, within CCNA_00773at 828.784 kb on + strand, within CCNA_00773at 828.824 kb on - strandat 828.833 kb on + strandat 828.841 kb on - strandat 828.841 kb on - strandat 828.849 kb on + strandat 828.851 kb on + strandat 828.886 kb on + strandat 828.896 kb on + strandat 828.904 kb on - strandat 828.917 kb on + strandat 828.992 kb on - strandat 829.001 kb on + strandat 829.009 kb on + strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.014 kb on + strandat 829.017 kb on - strandat 829.030 kb on - strandat 829.110 kb on - strandat 829.162 kb on + strand, within CCNA_03937at 829.170 kb on - strand, within CCNA_03937at 829.187 kb on + strand, within CCNA_03937at 829.209 kb on + strand, within CCNA_03937at 829.209 kb on + strand, within CCNA_03937at 829.224 kb on + strand, within CCNA_03937at 829.232 kb on - strand, within CCNA_03937at 829.242 kb on + strand, within CCNA_03937at 829.322 kb on - strandat 829.389 kb on - strandat 829.431 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.502 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.549 kb on - strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.696 kb on + strand, within CCNA_00774at 829.702 kb on - strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.749 kb on - strand, within CCNA_00774at 829.754 kb on - strand, within CCNA_00774at 829.797 kb on - strand, within CCNA_00774at 829.826 kb on - strand, within CCNA_00774at 829.827 kb on + strand, within CCNA_00774at 829.835 kb on - strand, within CCNA_00774at 829.840 kb on - strand, within CCNA_00774at 829.865 kb on + strand, within CCNA_00774at 829.868 kb on - strand, within CCNA_00774at 829.874 kb on - strand, within CCNA_00774at 829.889 kb on - strand, within CCNA_00774at 829.932 kb on - strand, within CCNA_00774at 829.957 kb on + strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.014 kb on - strand, within CCNA_00774at 830.021 kb on - strand, within CCNA_00774at 830.021 kb on - strand, within CCNA_00774at 830.022 kb on + strand, within CCNA_00774at 830.091 kb on - strand, within CCNA_00774at 830.106 kb on + strand, within CCNA_00774at 830.198 kb on + strand, within CCNA_00774at 830.210 kb on + strand, within CCNA_00774at 830.265 kb on + strand, within CCNA_00774at 830.273 kb on + strand, within CCNA_00774at 830.273 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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828,111 - CCNA_00773 0.44 -0.3
828,123 + CCNA_00773 0.45 +0.3
828,193 + CCNA_00773 0.50 +2.2
828,200 - CCNA_00773 0.50 -0.7
828,203 + CCNA_00773 0.50 -0.4
828,217 + CCNA_00773 0.51 +0.5
828,231 + CCNA_00773 0.52 +0.5
828,237 + CCNA_00773 0.53 +0.0
828,274 + CCNA_00773 0.55 +0.0
828,279 + CCNA_00773 0.56 +0.1
828,279 + CCNA_00773 0.56 +0.8
828,279 + CCNA_00773 0.56 -0.2
828,279 + CCNA_00773 0.56 -0.0
828,279 + CCNA_00773 0.56 +0.1
828,279 + CCNA_00773 0.56 +0.6
828,279 + CCNA_00773 0.56 -1.3
828,279 + CCNA_00773 0.56 +1.3
828,279 + CCNA_00773 0.56 +0.2
828,279 + CCNA_00773 0.56 -0.2
828,279 + CCNA_00773 0.56 +0.5
828,279 + CCNA_00773 0.56 -0.1
828,287 - CCNA_00773 0.56 -1.8
828,287 - CCNA_00773 0.56 -1.2
828,287 - CCNA_00773 0.56 +0.3
828,287 - CCNA_00773 0.56 -0.3
828,287 - CCNA_00773 0.56 -0.9
828,287 - CCNA_00773 0.56 -1.2
828,287 - CCNA_00773 0.56 -0.9
828,287 - CCNA_00773 0.56 -0.7
828,287 - CCNA_00773 0.56 +0.6
828,287 - CCNA_00773 0.56 +1.2
828,287 - CCNA_00773 0.56 -0.5
828,287 - CCNA_00773 0.56 +0.5
828,287 - CCNA_00773 0.56 -1.7
828,287 - CCNA_00773 0.56 -1.9
828,287 - CCNA_00773 0.56 +0.3
828,287 - CCNA_00773 0.56 -1.1
828,287 - CCNA_00773 0.56 -0.7
828,287 - CCNA_00773 0.56 -0.1
828,287 - CCNA_00773 0.56 +2.5
828,287 - CCNA_00773 0.56 -0.1
828,289 + CCNA_00773 0.56 -1.1
828,303 + CCNA_00773 0.57 -0.4
828,379 - CCNA_00773 0.62 +1.3
828,409 - CCNA_00773 0.64 -0.3
828,419 - CCNA_00773 0.65 +0.3
828,432 + CCNA_00773 0.66 +0.3
828,440 - CCNA_00773 0.66 -0.0
828,458 + CCNA_00773 0.68 -0.7
828,479 - CCNA_00773 0.69 +0.6
828,489 - CCNA_00773 0.70 +0.1
828,503 - CCNA_00773 0.71 +0.3
828,509 + CCNA_00773 0.71 -0.9
828,542 + CCNA_00773 0.73 +0.7
828,577 + CCNA_00773 0.76 +0.6
828,583 - CCNA_00773 0.76 +0.9
828,588 + CCNA_00773 0.76 -0.2
828,602 - CCNA_00773 0.77 -0.9
828,602 - CCNA_00773 0.77 +0.3
828,648 - CCNA_00773 0.80 +0.0
828,651 - CCNA_00773 0.81 +0.1
828,699 + CCNA_00773 0.84 -0.6
828,726 + CCNA_00773 0.86 +0.1
828,727 + CCNA_00773 0.86 -2.5
828,730 - CCNA_00773 0.86 -1.4
828,734 - CCNA_00773 0.86 -1.1
828,737 + CCNA_00773 0.86 -0.1
828,737 + CCNA_00773 0.86 -1.4
828,747 + CCNA_00773 0.87 -0.1
828,784 + CCNA_00773 0.90 -0.2
828,824 - -0.4
828,833 + -0.5
828,841 - +1.3
828,841 - +0.1
828,849 + +0.0
828,851 + +0.3
828,886 + +0.3
828,896 + +1.0
828,904 - -1.6
828,917 + +1.5
828,992 - +0.3
829,001 + +0.2
829,009 + -0.3
829,009 - +0.0
829,009 - -0.4
829,009 - +0.2
829,009 - -0.4
829,014 + -0.1
829,017 - +0.1
829,030 - +0.5
829,110 - -0.0
829,162 + CCNA_03937 0.31 -0.7
829,170 - CCNA_03937 0.35 +0.8
829,187 + CCNA_03937 0.44 -0.4
829,209 + CCNA_03937 0.56 +1.6
829,209 + CCNA_03937 0.56 +1.8
829,224 + CCNA_03937 0.64 -0.5
829,232 - CCNA_03937 0.68 +0.8
829,242 + CCNA_03937 0.74 +0.1
829,322 - -0.7
829,389 - +0.8
829,431 - CCNA_00774 0.10 -0.2
829,481 - CCNA_00774 0.15 -1.4
829,494 + CCNA_00774 0.16 -0.4
829,494 + CCNA_00774 0.16 -0.2
829,499 + CCNA_00774 0.16 -0.2
829,499 + CCNA_00774 0.16 -0.3
829,502 - CCNA_00774 0.17 -1.5
829,507 - CCNA_00774 0.17 -0.1
829,507 - CCNA_00774 0.17 -0.2
829,507 - CCNA_00774 0.17 -0.2
829,507 - CCNA_00774 0.17 +0.0
829,507 - CCNA_00774 0.17 +0.1
829,507 - CCNA_00774 0.17 -1.1
829,507 - CCNA_00774 0.17 -0.7
829,549 - CCNA_00774 0.21 -1.6
829,631 - CCNA_00774 0.28 -0.2
829,631 - CCNA_00774 0.28 -0.9
829,696 + CCNA_00774 0.34 +0.4
829,702 - CCNA_00774 0.35 +1.3
829,725 + CCNA_00774 0.37 +1.1
829,749 - CCNA_00774 0.39 -1.1
829,754 - CCNA_00774 0.39 +0.0
829,797 - CCNA_00774 0.43 -0.6
829,826 - CCNA_00774 0.46 +0.0
829,827 + CCNA_00774 0.46 -0.5
829,835 - CCNA_00774 0.47 -1.4
829,840 - CCNA_00774 0.47 +0.5
829,865 + CCNA_00774 0.49 -2.4
829,868 - CCNA_00774 0.50 +1.0
829,874 - CCNA_00774 0.50 -0.2
829,889 - CCNA_00774 0.52 +0.1
829,932 - CCNA_00774 0.55 +0.7
829,957 + CCNA_00774 0.58 +0.2
830,006 + CCNA_00774 0.62 -1.2
830,006 + CCNA_00774 0.62 -0.5
830,012 + CCNA_00774 0.63 +0.7
830,012 + CCNA_00774 0.63 -0.6
830,012 + CCNA_00774 0.63 +2.4
830,012 + CCNA_00774 0.63 -0.1
830,014 - CCNA_00774 0.63 -0.1
830,021 - CCNA_00774 0.63 -0.8
830,021 - CCNA_00774 0.63 -1.9
830,022 + CCNA_00774 0.64 +2.1
830,091 - CCNA_00774 0.70 +0.6
830,106 + CCNA_00774 0.71 -1.8
830,198 + CCNA_00774 0.79 -0.4
830,210 + CCNA_00774 0.80 +0.5
830,265 + CCNA_00774 0.85 -0.2
830,273 + CCNA_00774 0.86 +1.3
830,273 + CCNA_00774 0.86 -0.6
830,289 + CCNA_00774 0.88 +0.9
830,289 + CCNA_00774 0.88 +0.9

Or see this region's nucleotide sequence