Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03929

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03927 and CCNA_03928 are separated by 41 nucleotidesCCNA_03928 and CCNA_00716 are separated by 63 nucleotidesCCNA_00716 and CCNA_03929 are separated by 153 nucleotidesCCNA_03929 and CCNA_00718 are separated by 52 nucleotidesCCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094 _03927 CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327 _03928 CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567 _00716 CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834 _03929 CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783 _00718 CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894 _03930 Position (kb) 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 770.745 kb on + strandat 770.745 kb on + strandat 770.993 kb on - strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.033 kb on + strand, within CCNA_03927at 771.117 kb on - strandat 771.126 kb on - strandat 771.135 kb on + strandat 771.141 kb on - strandat 771.141 kb on - strandat 771.143 kb on - strandat 771.143 kb on - strandat 771.152 kb on + strandat 771.160 kb on - strand, within CCNA_03928at 771.181 kb on + strand, within CCNA_03928at 771.205 kb on + strand, within CCNA_03928at 771.212 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.213 kb on - strand, within CCNA_03928at 771.224 kb on + strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.232 kb on - strand, within CCNA_03928at 771.260 kb on + strand, within CCNA_03928at 771.268 kb on - strand, within CCNA_03928at 771.269 kb on + strand, within CCNA_03928at 771.307 kb on + strand, within CCNA_03928at 771.307 kb on + strand, within CCNA_03928at 771.333 kb on - strandat 771.336 kb on + strandat 771.336 kb on + strandat 771.346 kb on - strandat 771.381 kb on - strandat 771.401 kb on - strandat 771.428 kb on + strand, within CCNA_00716at 771.539 kb on + strand, within CCNA_00716at 771.539 kb on + strand, within CCNA_00716at 771.544 kb on + strand, within CCNA_00716at 771.547 kb on - strand, within CCNA_00716at 771.547 kb on - strand, within CCNA_00716at 771.550 kb on + strandat 771.552 kb on - strandat 771.666 kb on + strandat 771.666 kb on + strandat 771.682 kb on + strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.696 kb on - strandat 771.717 kb on - strandat 771.717 kb on - strandat 771.727 kb on - strandat 771.765 kb on + strand, within CCNA_03929at 771.773 kb on - strand, within CCNA_03929at 771.773 kb on - strand, within CCNA_03929at 771.785 kb on - strand, within CCNA_03929at 771.798 kb on - strand, within CCNA_03929at 771.861 kb on + strandat 771.885 kb on + strandat 771.893 kb on - strandat 771.963 kb on - strandat 771.976 kb on + strandat 771.976 kb on + strandat 772.005 kb on + strand, within CCNA_00718at 772.005 kb on + strand, within CCNA_00718at 772.012 kb on + strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.013 kb on - strand, within CCNA_00718at 772.015 kb on - strand, within CCNA_00718at 772.099 kb on + strand, within CCNA_00718at 772.100 kb on + strand, within CCNA_00718at 772.102 kb on - strand, within CCNA_00718at 772.130 kb on + strand, within CCNA_00718at 772.133 kb on - strand, within CCNA_00718at 772.138 kb on - strand, within CCNA_00718at 772.210 kb on + strand, within CCNA_00718at 772.210 kb on + strand, within CCNA_00718at 772.218 kb on - strand, within CCNA_00718at 772.288 kb on + strand, within CCNA_00718at 772.293 kb on - strand, within CCNA_00718at 772.314 kb on + strand, within CCNA_00718at 772.321 kb on - strand, within CCNA_00718at 772.322 kb on - strand, within CCNA_00718at 772.335 kb on - strand, within CCNA_00718at 772.340 kb on - strand, within CCNA_00718at 772.341 kb on - strand, within CCNA_00718at 772.347 kb on + strand, within CCNA_00718at 772.366 kb on + strand, within CCNA_00718at 772.389 kb on - strand, within CCNA_00718at 772.418 kb on - strand, within CCNA_00718at 772.424 kb on + strand, within CCNA_00718at 772.455 kb on - strand, within CCNA_00718at 772.455 kb on - strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.468 kb on + strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.476 kb on - strand, within CCNA_00718at 772.488 kb on - strand, within CCNA_00718at 772.523 kb on - strand, within CCNA_00718at 772.582 kb on - strand, within CCNA_00718at 772.596 kb on + strand, within CCNA_00718at 772.698 kb on - strandat 772.698 kb on - strandat 772.724 kb on + strandat 772.745 kb on - strandat 772.756 kb on - strandat 772.787 kb on + strandat 772.787 kb on + strandat 772.802 kb on + strand, within CCNA_03930at 772.803 kb on - strand, within CCNA_03930at 772.805 kb on - strand, within CCNA_03930at 772.820 kb on + strand, within CCNA_03930at 772.828 kb on - strand, within CCNA_03930

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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770,745 + -0.2
770,745 + +0.4
770,993 - CCNA_03927 0.66 +1.0
771,033 + CCNA_03927 0.79 +0.3
771,033 + CCNA_03927 0.79 -1.3
771,117 - -0.9
771,126 - -1.7
771,135 + +0.6
771,141 - -2.0
771,141 - -0.2
771,143 - -0.0
771,143 - -0.9
771,152 + -0.3
771,160 - CCNA_03928 0.12 -0.3
771,181 + CCNA_03928 0.23 -0.0
771,205 + CCNA_03928 0.36 -0.2
771,212 - CCNA_03928 0.40 +0.4
771,213 - CCNA_03928 0.40 -0.3
771,213 - CCNA_03928 0.40 -0.5
771,213 - CCNA_03928 0.40 +0.2
771,224 + CCNA_03928 0.46 +0.6
771,232 - CCNA_03928 0.50 +2.2
771,232 - CCNA_03928 0.50 +0.4
771,260 + CCNA_03928 0.65 +0.5
771,268 - CCNA_03928 0.69 +2.0
771,269 + CCNA_03928 0.69 +1.0
771,307 + CCNA_03928 0.89 +2.0
771,307 + CCNA_03928 0.89 -0.5
771,333 - -1.5
771,336 + -0.3
771,336 + -0.7
771,346 - +0.2
771,381 - +0.5
771,401 - +0.2
771,428 + CCNA_00716 0.21 +0.3
771,539 + CCNA_00716 0.84 -0.0
771,539 + CCNA_00716 0.84 +1.0
771,544 + CCNA_00716 0.86 +0.5
771,547 - CCNA_00716 0.88 +0.4
771,547 - CCNA_00716 0.88 -1.3
771,550 + +0.6
771,552 - -0.1
771,666 + -1.9
771,666 + -0.4
771,682 + -1.3
771,696 - +0.4
771,696 - +0.5
771,696 - -0.1
771,696 - -0.2
771,717 - -0.3
771,717 - +0.2
771,727 - -2.2
771,765 + CCNA_03929 0.39 +0.6
771,773 - CCNA_03929 0.46 +0.3
771,773 - CCNA_03929 0.46 +0.4
771,785 - CCNA_03929 0.56 +0.4
771,798 - CCNA_03929 0.68 +0.3
771,861 + +0.1
771,885 + -0.4
771,893 - -0.2
771,963 - -0.0
771,976 + -0.4
771,976 + +0.4
772,005 + CCNA_00718 0.13 +0.8
772,005 + CCNA_00718 0.13 +0.3
772,012 + CCNA_00718 0.14 -2.4
772,013 - CCNA_00718 0.14 -1.0
772,013 - CCNA_00718 0.14 -0.7
772,013 - CCNA_00718 0.14 +1.4
772,015 - CCNA_00718 0.14 -0.3
772,099 + CCNA_00718 0.24 -1.6
772,100 + CCNA_00718 0.24 -1.2
772,102 - CCNA_00718 0.24 +1.5
772,130 + CCNA_00718 0.27 -1.5
772,133 - CCNA_00718 0.27 -0.0
772,138 - CCNA_00718 0.28 +0.2
772,210 + CCNA_00718 0.36 +0.1
772,210 + CCNA_00718 0.36 -1.3
772,218 - CCNA_00718 0.37 -0.7
772,288 + CCNA_00718 0.45 -0.7
772,293 - CCNA_00718 0.45 +1.9
772,314 + CCNA_00718 0.48 -2.1
772,321 - CCNA_00718 0.48 +0.3
772,322 - CCNA_00718 0.48 +0.9
772,335 - CCNA_00718 0.50 +0.5
772,340 - CCNA_00718 0.51 +0.2
772,341 - CCNA_00718 0.51 +0.6
772,347 + CCNA_00718 0.51 -0.3
772,366 + CCNA_00718 0.53 -0.4
772,389 - CCNA_00718 0.56 +0.9
772,418 - CCNA_00718 0.59 +0.1
772,424 + CCNA_00718 0.60 -1.4
772,455 - CCNA_00718 0.63 +0.1
772,455 - CCNA_00718 0.63 -0.1
772,468 + CCNA_00718 0.65 -0.9
772,468 + CCNA_00718 0.65 -0.5
772,468 + CCNA_00718 0.65 +1.1
772,476 - CCNA_00718 0.66 +0.1
772,476 - CCNA_00718 0.66 -0.4
772,476 - CCNA_00718 0.66 -2.4
772,476 - CCNA_00718 0.66 -1.2
772,476 - CCNA_00718 0.66 -1.3
772,488 - CCNA_00718 0.67 +0.9
772,523 - CCNA_00718 0.71 -0.2
772,582 - CCNA_00718 0.77 +0.4
772,596 + CCNA_00718 0.79 -1.0
772,698 - +0.3
772,698 - +0.1
772,724 + +1.3
772,745 - +0.7
772,756 - -0.4
772,787 + -0.6
772,787 + +0.1
772,802 + CCNA_03930 0.11 -0.9
772,803 - CCNA_03930 0.12 -0.6
772,805 - CCNA_03930 0.14 -1.0
772,820 + CCNA_03930 0.29 -0.4
772,828 - CCNA_03930 0.36 -1.6

Or see this region's nucleotide sequence