Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00369 and CCNA_03918 are separated by 294 nucleotides CCNA_03918 and CCNA_00370 are separated by 16 nucleotides CCNA_00370 and CCNA_00371 are separated by 10 nucleotides
CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130
_00369
CCNA_03918: CCNA_03918 - hypothetical protein, at 387,425 to 387,559
_03918
CCNA_00370: CCNA_00370 - ATP synthase B chain, at 387,576 to 388,085
_00370
CCNA_00371: CCNA_00371 - ATP synthase B, at 388,096 to 388,629
_00371
Position (kb) 387
388 Strain fitness (log2 ratio) -1
0
1 at 386.515 kb on + strand, within CCNA_00369 at 386.523 kb on - strand, within CCNA_00369 at 386.527 kb on + strand, within CCNA_00369 at 386.534 kb on - strand, within CCNA_00369 at 386.564 kb on + strand, within CCNA_00369 at 386.574 kb on + strand, within CCNA_00369 at 386.616 kb on - strand, within CCNA_00369 at 386.689 kb on + strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.707 kb on + strand, within CCNA_00369 at 386.715 kb on - strand, within CCNA_00369 at 386.715 kb on - strand, within CCNA_00369 at 386.715 kb on - strand, within CCNA_00369 at 386.772 kb on + strand, within CCNA_00369 at 386.829 kb on + strand, within CCNA_00369 at 386.915 kb on - strand, within CCNA_00369 at 386.989 kb on - strand, within CCNA_00369 at 387.116 kb on + strand at 387.124 kb on - strand at 387.125 kb on + strand at 387.133 kb on - strand at 387.134 kb on - strand at 387.159 kb on + strand at 387.167 kb on - strand at 387.206 kb on - strand at 387.207 kb on - strand at 387.207 kb on - strand at 387.207 kb on - strand at 387.250 kb on - strand at 387.252 kb on - strand at 387.258 kb on - strand at 387.278 kb on + strand at 387.278 kb on + strand at 387.299 kb on + strand at 387.299 kb on + strand at 387.301 kb on + strand at 387.307 kb on - strand at 387.307 kb on - strand at 387.307 kb on - strand at 387.318 kb on - strand at 387.448 kb on + strand, within CCNA_03918 at 387.538 kb on - strand, within CCNA_03918 at 387.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 386,515 + CCNA_00369 0.53 +0.7 386,523 - CCNA_00369 0.54 +0.8 386,527 + CCNA_00369 0.54 +0.1 386,534 - CCNA_00369 0.55 +0.5 386,564 + CCNA_00369 0.57 +0.2 386,574 + CCNA_00369 0.58 +1.3 386,616 - CCNA_00369 0.61 -0.1 386,689 + CCNA_00369 0.66 +0.3 386,707 + CCNA_00369 0.68 +0.1 386,707 + CCNA_00369 0.68 -0.6 386,715 - CCNA_00369 0.68 +0.8 386,715 - CCNA_00369 0.68 -0.8 386,715 - CCNA_00369 0.68 -0.6 386,772 + CCNA_00369 0.73 +0.5 386,829 + CCNA_00369 0.77 +0.3 386,915 - CCNA_00369 0.84 +0.3 386,989 - CCNA_00369 0.89 +1.0 387,116 + +0.2 387,124 - +0.1 387,125 + +0.6 387,133 - +0.3 387,134 - +0.1 387,159 + +0.6 387,167 - +0.2 387,206 - -0.0 387,207 - -0.1 387,207 - +0.2 387,207 - +0.2 387,250 - -0.0 387,252 - +0.1 387,258 - -0.6 387,278 + +0.8 387,278 + +0.2 387,299 + +0.6 387,299 + +0.7 387,301 + -0.2 387,307 - +0.4 387,307 - -0.1 387,307 - +0.2 387,318 - +0.6 387,448 + CCNA_03918 0.17 +0.3 387,538 - CCNA_03918 0.84 +0.3 387,567 + -0.1
Or see this region's nucleotide sequence