Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03861 and CCNA_03862 are separated by 12 nucleotides CCNA_03862 and CCNA_03863 are separated by 6 nucleotides CCNA_03863 and CCNA_03864 are separated by 253 nucleotides CCNA_03864 and CCNA_03865 are separated by 139 nucleotides
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
CCNA_03864: CCNA_03864 - hypothetical protein, at 4,025,489 to 4,026,016
_03864
CCNA_03865: CCNA_03865 - leucyl-tRNA synthetase, at 4,026,156 to 4,028,741
_03865
Position (kb)
4024
4025
4026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4023.986 kb on - strand, within CCNA_03861 at 4024.021 kb on - strand, within CCNA_03861 at 4024.030 kb on + strand, within CCNA_03861 at 4024.052 kb on - strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.086 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.112 kb on - strand, within CCNA_03861 at 4024.143 kb on - strand at 4024.182 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.205 kb on - strand at 4024.232 kb on - strand at 4024.235 kb on - strand at 4024.813 kb on + strand at 4024.917 kb on + strand, within CCNA_03863 at 4024.925 kb on - strand, within CCNA_03863 at 4024.953 kb on + strand, within CCNA_03863 at 4024.961 kb on - strand, within CCNA_03863 at 4024.970 kb on + strand, within CCNA_03863 at 4024.978 kb on - strand, within CCNA_03863 at 4025.023 kb on - strand, within CCNA_03863 at 4025.111 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.191 kb on + strand, within CCNA_03863 at 4025.194 kb on - strand, within CCNA_03863 at 4025.198 kb on - strand at 4025.255 kb on - strand at 4025.259 kb on - strand at 4025.269 kb on - strand at 4025.269 kb on - strand at 4025.269 kb on - strand at 4025.269 kb on - strand at 4025.269 kb on - strand at 4025.326 kb on + strand at 4025.357 kb on - strand at 4025.399 kb on - strand at 4025.425 kb on - strand at 4025.427 kb on + strand at 4025.487 kb on + strand at 4025.499 kb on + strand at 4025.499 kb on + strand at 4025.507 kb on - strand at 4025.507 kb on - strand at 4025.520 kb on + strand at 4025.695 kb on - strand, within CCNA_03864 at 4025.752 kb on + strand, within CCNA_03864 at 4025.896 kb on + strand, within CCNA_03864 at 4026.004 kb on + strand at 4026.004 kb on + strand at 4026.040 kb on + strand at 4026.094 kb on + strand at 4026.115 kb on + strand at 4026.115 kb on + strand at 4026.115 kb on + strand at 4026.115 kb on + strand at 4026.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 4,023,986 - CCNA_03861 0.69 -0.8 4,024,021 - CCNA_03861 0.75 -0.8 4,024,030 + CCNA_03861 0.76 -1.7 4,024,052 - CCNA_03861 0.80 -2.0 4,024,085 + CCNA_03861 0.85 -2.0 4,024,085 + CCNA_03861 0.85 -2.2 4,024,086 - CCNA_03861 0.85 -0.8 4,024,093 - CCNA_03861 0.86 -0.9 4,024,093 - CCNA_03861 0.86 -1.1 4,024,112 - CCNA_03861 0.89 -0.5 4,024,143 - -0.0 4,024,182 + +0.6 4,024,195 + +0.2 4,024,195 + -0.4 4,024,195 + +0.9 4,024,195 + +0.2 4,024,195 + +0.7 4,024,205 - +0.0 4,024,232 - +0.4 4,024,235 - -0.2 4,024,813 + -0.9 4,024,917 + CCNA_03863 0.22 +1.3 4,024,925 - CCNA_03863 0.24 +0.1 4,024,953 + CCNA_03863 0.31 -0.2 4,024,961 - CCNA_03863 0.33 +0.7 4,024,970 + CCNA_03863 0.35 -0.6 4,024,978 - CCNA_03863 0.37 +0.5 4,025,023 - CCNA_03863 0.48 +0.6 4,025,111 + CCNA_03863 0.70 +0.7 4,025,158 - CCNA_03863 0.81 +0.3 4,025,191 + CCNA_03863 0.89 -0.2 4,025,194 - CCNA_03863 0.90 +0.1 4,025,198 - +0.7 4,025,255 - +0.1 4,025,259 - +0.5 4,025,269 - +0.8 4,025,269 - -0.2 4,025,269 - +0.1 4,025,269 - -0.1 4,025,269 - +0.5 4,025,326 + -0.6 4,025,357 - +0.3 4,025,399 - -0.3 4,025,425 - -1.3 4,025,427 + -0.0 4,025,487 + +0.3 4,025,499 + -0.7 4,025,499 + -0.0 4,025,507 - -0.7 4,025,507 - +0.2 4,025,520 + +0.2 4,025,695 - CCNA_03864 0.39 +0.4 4,025,752 + CCNA_03864 0.50 +0.8 4,025,896 + CCNA_03864 0.77 -0.2 4,026,004 + -0.7 4,026,004 + +0.8 4,026,040 + +0.4 4,026,094 + -0.2 4,026,115 + +1.1 4,026,115 + +1.3 4,026,115 + +1.8 4,026,115 + -0.7 4,026,137 + +0.6
Or see this region's nucleotide sequence