Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03735 and CCNA_R0091 are separated by 312 nucleotides CCNA_R0091 and CCNA_03736 are separated by 105 nucleotides CCNA_03736 and CCNA_03737 overlap by 8 nucleotides CCNA_03737 and CCNA_03738 are separated by 175 nucleotides
CCNA_03735: CCNA_03735 - transketolase, at 3,904,176 to 3,906,137
_03735
CCNA_R0091: CCNA_R0091 - tRNA-Ala, at 3,906,450 to 3,906,525
_R0091
CCNA_03736: CCNA_03736 - YGGT family membrane protein, at 3,906,631 to 3,906,945
_03736
CCNA_03737: CCNA_03737 - YggU superfamily protein, at 3,906,938 to 3,907,234
_03737
CCNA_03738: CCNA_03738 - hybrid histidine kinase/receiver domain protein, at 3,907,410 to 3,909,197
_03738
Position (kb)
3906
3907 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3906.134 kb on - strand at 3906.150 kb on + strand at 3906.150 kb on + strand at 3906.158 kb on + strand at 3906.166 kb on - strand at 3906.166 kb on - strand at 3906.198 kb on - strand at 3906.213 kb on + strand at 3906.213 kb on + strand at 3906.257 kb on + strand at 3906.260 kb on - strand at 3906.265 kb on - strand at 3906.272 kb on - strand at 3906.272 kb on - strand at 3906.278 kb on + strand at 3906.345 kb on - strand at 3906.521 kb on + strand at 3906.529 kb on - strand at 3906.545 kb on + strand at 3906.560 kb on + strand at 3906.560 kb on + strand at 3906.577 kb on - strand at 3906.628 kb on + strand at 3906.824 kb on + strand, within CCNA_03736 at 3906.913 kb on + strand, within CCNA_03736 at 3906.979 kb on - strand, within CCNA_03737 at 3906.998 kb on - strand, within CCNA_03737 at 3907.046 kb on - strand, within CCNA_03737 at 3907.046 kb on - strand, within CCNA_03737 at 3907.188 kb on + strand, within CCNA_03737 at 3907.188 kb on + strand, within CCNA_03737 at 3907.196 kb on - strand, within CCNA_03737 at 3907.221 kb on + strand at 3907.378 kb on - strand at 3907.378 kb on - strand at 3907.384 kb on + strand at 3907.389 kb on + strand at 3907.408 kb on + strand at 3907.416 kb on - strand at 3907.416 kb on - strand at 3907.435 kb on - strand at 3907.463 kb on - strand at 3907.473 kb on + strand at 3907.484 kb on + strand at 3907.484 kb on + strand at 3907.514 kb on - strand at 3907.523 kb on - strand at 3907.525 kb on + strand at 3907.530 kb on + strand at 3907.530 kb on + strand at 3907.530 kb on + strand at 3907.531 kb on - strand at 3907.538 kb on - strand at 3907.560 kb on + strand at 3907.568 kb on - strand at 3907.573 kb on - strand at 3907.577 kb on + strand at 3907.577 kb on + strand at 3907.580 kb on + strand at 3907.585 kb on - strand at 3907.585 kb on - strand at 3907.585 kb on - strand at 3907.585 kb on - strand at 3907.585 kb on - strand at 3907.607 kb on - strand, within CCNA_03738 at 3907.607 kb on - strand, within CCNA_03738 at 3907.625 kb on + strand, within CCNA_03738 at 3907.643 kb on - strand, within CCNA_03738 at 3907.643 kb on - strand, within CCNA_03738 at 3907.653 kb on - strand, within CCNA_03738 at 3907.677 kb on + strand, within CCNA_03738 at 3907.685 kb on - strand, within CCNA_03738 at 3907.686 kb on + strand, within CCNA_03738 at 3907.694 kb on - strand, within CCNA_03738 at 3907.730 kb on - strand, within CCNA_03738 at 3907.765 kb on + strand, within CCNA_03738 at 3907.765 kb on - strand, within CCNA_03738 at 3907.782 kb on + strand, within CCNA_03738 at 3907.811 kb on - strand, within CCNA_03738 at 3907.858 kb on - strand, within CCNA_03738 at 3907.905 kb on + strand, within CCNA_03738 at 3907.905 kb on + strand, within CCNA_03738 at 3907.918 kb on - strand, within CCNA_03738 at 3907.918 kb on - strand, within CCNA_03738 at 3907.924 kb on + strand, within CCNA_03738 at 3907.943 kb on - strand, within CCNA_03738
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,906,134 - +0.4 3,906,150 + +0.1 3,906,150 + +0.5 3,906,158 + -0.3 3,906,166 - -0.6 3,906,166 - -0.2 3,906,198 - +0.4 3,906,213 + +0.2 3,906,213 + +1.4 3,906,257 + +0.6 3,906,260 - -0.7 3,906,265 - -1.2 3,906,272 - -0.3 3,906,272 - -1.4 3,906,278 + -0.2 3,906,345 - +0.4 3,906,521 + -0.0 3,906,529 - -0.2 3,906,545 + -0.0 3,906,560 + -0.9 3,906,560 + -0.4 3,906,577 - -1.3 3,906,628 + -0.7 3,906,824 + CCNA_03736 0.61 -0.2 3,906,913 + CCNA_03736 0.90 -1.3 3,906,979 - CCNA_03737 0.14 -0.9 3,906,998 - CCNA_03737 0.20 -0.3 3,907,046 - CCNA_03737 0.36 -0.0 3,907,046 - CCNA_03737 0.36 -0.4 3,907,188 + CCNA_03737 0.84 -0.1 3,907,188 + CCNA_03737 0.84 +0.1 3,907,196 - CCNA_03737 0.87 -0.2 3,907,221 + +0.1 3,907,378 - +0.7 3,907,378 - +1.0 3,907,384 + +0.5 3,907,389 + +0.4 3,907,408 + -1.7 3,907,416 - +1.1 3,907,416 - +0.3 3,907,435 - -1.8 3,907,463 - -2.9 3,907,473 + -0.9 3,907,484 + -0.3 3,907,484 + +0.1 3,907,514 - +1.0 3,907,523 - -0.7 3,907,525 + -0.6 3,907,530 + -0.2 3,907,530 + +1.2 3,907,530 + +0.2 3,907,531 - +0.2 3,907,538 - -0.3 3,907,560 + -0.4 3,907,568 - -0.2 3,907,573 - -1.0 3,907,577 + +0.6 3,907,577 + -2.1 3,907,580 + -1.0 3,907,585 - +0.8 3,907,585 - -0.9 3,907,585 - -1.3 3,907,585 - -1.8 3,907,585 - -0.5 3,907,607 - CCNA_03738 0.11 +0.6 3,907,607 - CCNA_03738 0.11 -0.3 3,907,625 + CCNA_03738 0.12 +0.4 3,907,643 - CCNA_03738 0.13 +1.5 3,907,643 - CCNA_03738 0.13 -1.2 3,907,653 - CCNA_03738 0.14 +1.5 3,907,677 + CCNA_03738 0.15 -0.8 3,907,685 - CCNA_03738 0.15 +0.4 3,907,686 + CCNA_03738 0.15 -0.3 3,907,694 - CCNA_03738 0.16 +0.6 3,907,730 - CCNA_03738 0.18 +0.0 3,907,765 + CCNA_03738 0.20 +0.2 3,907,765 - CCNA_03738 0.20 +0.6 3,907,782 + CCNA_03738 0.21 +0.1 3,907,811 - CCNA_03738 0.22 +0.1 3,907,858 - CCNA_03738 0.25 -1.0 3,907,905 + CCNA_03738 0.28 -0.4 3,907,905 + CCNA_03738 0.28 +0.4 3,907,918 - CCNA_03738 0.28 +0.7 3,907,918 - CCNA_03738 0.28 -0.7 3,907,924 + CCNA_03738 0.29 -1.7 3,907,943 - CCNA_03738 0.30 -0.1
Or see this region's nucleotide sequence