Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03707 and CCNA_03708 are separated by 13 nucleotides CCNA_03708 and CCNA_03709 are separated by 14 nucleotides CCNA_03709 and CCNA_03710 are separated by 164 nucleotides CCNA_03710 and CCNA_03711 are separated by 7 nucleotides CCNA_03711 and CCNA_03712 are separated by 63 nucleotides
CCNA_03707: CCNA_03707 - hypothetical protein, at 3,875,200 to 3,875,469
_03707
CCNA_03708: CCNA_03708 - transposase, at 3,875,483 to 3,875,851
_03708
CCNA_03709: CCNA_03709 - transposase, at 3,875,866 to 3,876,276
_03709
CCNA_03710: CCNA_03710 - nitrogen regulatory IIA protein, at 3,876,441 to 3,876,983
_03710
CCNA_03711: CCNA_03711 - ribosome-associated factor Y, at 3,876,991 to 3,877,617
_03711
CCNA_03712: CCNA_03712 - ExoD-family ABC transport membrane permease, at 3,877,681 to 3,878,295
_03712
Position (kb)
3876
3877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3875.455 kb on + strand at 3875.505 kb on - strand at 3876.377 kb on + strand at 3876.382 kb on - strand at 3876.391 kb on + strand at 3876.428 kb on + strand at 3876.436 kb on - strand at 3876.437 kb on + strand at 3876.485 kb on - strand at 3876.523 kb on + strand, within CCNA_03710 at 3876.524 kb on - strand, within CCNA_03710 at 3876.583 kb on + strand, within CCNA_03710 at 3876.646 kb on - strand, within CCNA_03710 at 3876.666 kb on + strand, within CCNA_03710 at 3876.761 kb on + strand, within CCNA_03710 at 3876.818 kb on - strand, within CCNA_03710 at 3876.833 kb on - strand, within CCNA_03710 at 3876.909 kb on - strand, within CCNA_03710 at 3876.942 kb on - strand at 3876.981 kb on - strand at 3876.994 kb on + strand at 3877.007 kb on - strand at 3877.082 kb on - strand, within CCNA_03711 at 3877.120 kb on - strand, within CCNA_03711 at 3877.138 kb on + strand, within CCNA_03711 at 3877.141 kb on + strand, within CCNA_03711 at 3877.203 kb on - strand, within CCNA_03711 at 3877.203 kb on - strand, within CCNA_03711 at 3877.203 kb on - strand, within CCNA_03711 at 3877.203 kb on - strand, within CCNA_03711 at 3877.203 kb on - strand, within CCNA_03711 at 3877.237 kb on + strand, within CCNA_03711 at 3877.293 kb on - strand, within CCNA_03711 at 3877.294 kb on + strand, within CCNA_03711 at 3877.295 kb on + strand, within CCNA_03711 at 3877.302 kb on - strand, within CCNA_03711 at 3877.302 kb on - strand, within CCNA_03711 at 3877.313 kb on - strand, within CCNA_03711 at 3877.370 kb on + strand, within CCNA_03711 at 3877.370 kb on + strand, within CCNA_03711 at 3877.370 kb on + strand, within CCNA_03711 at 3877.370 kb on + strand, within CCNA_03711 at 3877.378 kb on - strand, within CCNA_03711 at 3877.385 kb on + strand, within CCNA_03711 at 3877.410 kb on + strand, within CCNA_03711 at 3877.417 kb on - strand, within CCNA_03711 at 3877.417 kb on - strand, within CCNA_03711 at 3877.418 kb on - strand, within CCNA_03711 at 3877.525 kb on + strand, within CCNA_03711 at 3877.525 kb on + strand, within CCNA_03711 at 3877.532 kb on + strand, within CCNA_03711 at 3877.603 kb on + strand at 3877.654 kb on - strand at 3877.679 kb on + strand at 3877.679 kb on + strand at 3877.679 kb on + strand at 3877.679 kb on + strand at 3877.687 kb on - strand at 3877.687 kb on - strand at 3877.687 kb on - strand at 3877.689 kb on + strand at 3877.689 kb on + strand at 3877.697 kb on - strand at 3877.697 kb on - strand at 3877.739 kb on + strand at 3877.739 kb on + strand at 3877.765 kb on + strand, within CCNA_03712 at 3877.792 kb on + strand, within CCNA_03712 at 3877.805 kb on - strand, within CCNA_03712 at 3877.808 kb on + strand, within CCNA_03712 at 3877.808 kb on + strand, within CCNA_03712 at 3877.808 kb on + strand, within CCNA_03712 at 3877.808 kb on + strand, within CCNA_03712 at 3877.816 kb on - strand, within CCNA_03712 at 3877.859 kb on - strand, within CCNA_03712 at 3877.899 kb on + strand, within CCNA_03712 at 3877.901 kb on + strand, within CCNA_03712 at 3877.901 kb on + strand, within CCNA_03712 at 3877.901 kb on + strand, within CCNA_03712 at 3877.901 kb on + strand, within CCNA_03712 at 3877.908 kb on - strand, within CCNA_03712 at 3877.909 kb on - strand, within CCNA_03712 at 3877.909 kb on - strand, within CCNA_03712 at 3877.910 kb on + strand, within CCNA_03712 at 3877.929 kb on - strand, within CCNA_03712 at 3877.935 kb on - strand, within CCNA_03712 at 3877.940 kb on - strand, within CCNA_03712 at 3877.950 kb on - strand, within CCNA_03712 at 3877.971 kb on + strand, within CCNA_03712 at 3877.971 kb on + strand, within CCNA_03712 at 3877.974 kb on - strand, within CCNA_03712 at 3877.979 kb on - strand, within CCNA_03712 at 3877.979 kb on - strand, within CCNA_03712 at 3877.979 kb on - strand, within CCNA_03712 at 3877.979 kb on - strand, within CCNA_03712 at 3877.979 kb on - strand, within CCNA_03712 at 3877.981 kb on + strand, within CCNA_03712 at 3877.981 kb on + strand, within CCNA_03712 at 3877.981 kb on + strand, within CCNA_03712
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,875,455 + +0.6 3,875,505 - -0.0 3,876,377 + +0.9 3,876,382 - -0.0 3,876,391 + +0.2 3,876,428 + +1.8 3,876,436 - -0.1 3,876,437 + -0.6 3,876,485 - +1.3 3,876,523 + CCNA_03710 0.15 -0.0 3,876,524 - CCNA_03710 0.15 +0.1 3,876,583 + CCNA_03710 0.26 +1.6 3,876,646 - CCNA_03710 0.38 +1.8 3,876,666 + CCNA_03710 0.41 +0.3 3,876,761 + CCNA_03710 0.59 -0.8 3,876,818 - CCNA_03710 0.69 +0.4 3,876,833 - CCNA_03710 0.72 +2.2 3,876,909 - CCNA_03710 0.86 +0.0 3,876,942 - +0.4 3,876,981 - +0.5 3,876,994 + -1.0 3,877,007 - +0.3 3,877,082 - CCNA_03711 0.15 -0.5 3,877,120 - CCNA_03711 0.21 +0.1 3,877,138 + CCNA_03711 0.23 +1.3 3,877,141 + CCNA_03711 0.24 -2.7 3,877,203 - CCNA_03711 0.34 +0.1 3,877,203 - CCNA_03711 0.34 -0.4 3,877,203 - CCNA_03711 0.34 +0.5 3,877,203 - CCNA_03711 0.34 +0.5 3,877,203 - CCNA_03711 0.34 -1.0 3,877,237 + CCNA_03711 0.39 -2.4 3,877,293 - CCNA_03711 0.48 +0.1 3,877,294 + CCNA_03711 0.48 -0.0 3,877,295 + CCNA_03711 0.48 -0.1 3,877,302 - CCNA_03711 0.50 +0.3 3,877,302 - CCNA_03711 0.50 -0.4 3,877,313 - CCNA_03711 0.51 +0.2 3,877,370 + CCNA_03711 0.60 -0.4 3,877,370 + CCNA_03711 0.60 +0.3 3,877,370 + CCNA_03711 0.60 -0.9 3,877,370 + CCNA_03711 0.60 -0.2 3,877,378 - CCNA_03711 0.62 +0.1 3,877,385 + CCNA_03711 0.63 -0.3 3,877,410 + CCNA_03711 0.67 +0.8 3,877,417 - CCNA_03711 0.68 -0.1 3,877,417 - CCNA_03711 0.68 +0.0 3,877,418 - CCNA_03711 0.68 +0.3 3,877,525 + CCNA_03711 0.85 +0.4 3,877,525 + CCNA_03711 0.85 -0.5 3,877,532 + CCNA_03711 0.86 -1.6 3,877,603 + -0.8 3,877,654 - -0.6 3,877,679 + +1.4 3,877,679 + +0.4 3,877,679 + +0.1 3,877,679 + -1.0 3,877,687 - -1.2 3,877,687 - -1.2 3,877,687 - -1.0 3,877,689 + -2.6 3,877,689 + -0.8 3,877,697 - -0.2 3,877,697 - -0.3 3,877,739 + +0.5 3,877,739 + -1.0 3,877,765 + CCNA_03712 0.14 -0.8 3,877,792 + CCNA_03712 0.18 +0.4 3,877,805 - CCNA_03712 0.20 -0.2 3,877,808 + CCNA_03712 0.21 -0.4 3,877,808 + CCNA_03712 0.21 +0.4 3,877,808 + CCNA_03712 0.21 -2.0 3,877,808 + CCNA_03712 0.21 -0.4 3,877,816 - CCNA_03712 0.22 -0.0 3,877,859 - CCNA_03712 0.29 +0.3 3,877,899 + CCNA_03712 0.35 -1.4 3,877,901 + CCNA_03712 0.36 +0.4 3,877,901 + CCNA_03712 0.36 -2.2 3,877,901 + CCNA_03712 0.36 +0.2 3,877,901 + CCNA_03712 0.36 +2.1 3,877,908 - CCNA_03712 0.37 +1.0 3,877,909 - CCNA_03712 0.37 +1.5 3,877,909 - CCNA_03712 0.37 -0.5 3,877,910 + CCNA_03712 0.37 -1.0 3,877,929 - CCNA_03712 0.40 +1.2 3,877,935 - CCNA_03712 0.41 -0.3 3,877,940 - CCNA_03712 0.42 -0.2 3,877,950 - CCNA_03712 0.44 -0.2 3,877,971 + CCNA_03712 0.47 -0.3 3,877,971 + CCNA_03712 0.47 +1.3 3,877,974 - CCNA_03712 0.48 +1.0 3,877,979 - CCNA_03712 0.48 -0.6 3,877,979 - CCNA_03712 0.48 +0.0 3,877,979 - CCNA_03712 0.48 -0.4 3,877,979 - CCNA_03712 0.48 -0.7 3,877,979 - CCNA_03712 0.48 -0.6 3,877,981 + CCNA_03712 0.49 -0.2 3,877,981 + CCNA_03712 0.49 -0.4 3,877,981 + CCNA_03712 0.49 +0.1
Or see this region's nucleotide sequence