Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03556

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03554 and CCNA_03555 are separated by 52 nucleotidesCCNA_03555 and CCNA_03556 are separated by 9 nucleotidesCCNA_03556 and CCNA_03557 are separated by 109 nucleotides CCNA_03554: CCNA_03554 - esterase lipase family protein FzeB, at 3,710,527 to 3,711,843 _03554 CCNA_03555: CCNA_03555 - esterase lipase family protein, at 3,711,896 to 3,712,645 _03555 CCNA_03556: CCNA_03556 - multidrug efflux system protein, at 3,712,655 to 3,712,975 _03556 CCNA_03557: CCNA_03557 - hypothetical protein, at 3,713,085 to 3,713,810 _03557 Position (kb) 3712 3713Strain fitness (log2 ratio) -1 0 1 2at 3711.677 kb on - strand, within CCNA_03554at 3711.795 kb on - strandat 3711.844 kb on + strandat 3711.996 kb on + strand, within CCNA_03555at 3712.004 kb on - strand, within CCNA_03555at 3712.040 kb on - strand, within CCNA_03555at 3712.061 kb on + strand, within CCNA_03555at 3712.069 kb on - strand, within CCNA_03555at 3712.141 kb on + strand, within CCNA_03555at 3712.218 kb on + strand, within CCNA_03555at 3712.218 kb on + strand, within CCNA_03555at 3712.222 kb on + strand, within CCNA_03555at 3712.284 kb on - strand, within CCNA_03555at 3712.288 kb on + strand, within CCNA_03555at 3712.291 kb on + strand, within CCNA_03555at 3712.298 kb on + strand, within CCNA_03555at 3712.314 kb on - strand, within CCNA_03555at 3712.457 kb on - strand, within CCNA_03555at 3712.457 kb on - strand, within CCNA_03555at 3712.534 kb on + strand, within CCNA_03555at 3712.535 kb on + strand, within CCNA_03555at 3712.584 kb on + strandat 3712.622 kb on + strandat 3712.652 kb on + strandat 3712.665 kb on - strandat 3712.702 kb on + strand, within CCNA_03556at 3712.705 kb on - strand, within CCNA_03556at 3712.788 kb on + strand, within CCNA_03556at 3712.791 kb on - strand, within CCNA_03556at 3712.795 kb on + strand, within CCNA_03556at 3712.913 kb on + strand, within CCNA_03556at 3712.913 kb on + strand, within CCNA_03556at 3712.920 kb on - strand, within CCNA_03556at 3712.921 kb on - strand, within CCNA_03556at 3713.083 kb on - strandat 3713.103 kb on + strandat 3713.174 kb on - strand, within CCNA_03557at 3713.201 kb on - strand, within CCNA_03557at 3713.252 kb on - strand, within CCNA_03557at 3713.316 kb on - strand, within CCNA_03557at 3713.316 kb on - strand, within CCNA_03557at 3713.326 kb on - strand, within CCNA_03557at 3713.330 kb on + strand, within CCNA_03557at 3713.338 kb on - strand, within CCNA_03557at 3713.338 kb on - strand, within CCNA_03557at 3713.381 kb on + strand, within CCNA_03557at 3713.418 kb on - strand, within CCNA_03557at 3713.524 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.547 kb on - strand, within CCNA_03557at 3713.578 kb on + strand, within CCNA_03557at 3713.701 kb on + strand, within CCNA_03557at 3713.706 kb on + strand, within CCNA_03557at 3713.869 kb on - strandat 3713.881 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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3,711,677 - CCNA_03554 0.87 +0.4
3,711,795 - -0.5
3,711,844 + +0.3
3,711,996 + CCNA_03555 0.13 -0.8
3,712,004 - CCNA_03555 0.14 +1.2
3,712,040 - CCNA_03555 0.19 +0.6
3,712,061 + CCNA_03555 0.22 -0.9
3,712,069 - CCNA_03555 0.23 +0.2
3,712,141 + CCNA_03555 0.33 +1.1
3,712,218 + CCNA_03555 0.43 +1.8
3,712,218 + CCNA_03555 0.43 -0.2
3,712,222 + CCNA_03555 0.43 +0.6
3,712,284 - CCNA_03555 0.52 -0.6
3,712,288 + CCNA_03555 0.52 -0.1
3,712,291 + CCNA_03555 0.53 -0.1
3,712,298 + CCNA_03555 0.54 +0.1
3,712,314 - CCNA_03555 0.56 +0.1
3,712,457 - CCNA_03555 0.75 +0.7
3,712,457 - CCNA_03555 0.75 +0.6
3,712,534 + CCNA_03555 0.85 +0.6
3,712,535 + CCNA_03555 0.85 +0.5
3,712,584 + +1.4
3,712,622 + +0.5
3,712,652 + +0.2
3,712,665 - +0.1
3,712,702 + CCNA_03556 0.15 +0.2
3,712,705 - CCNA_03556 0.16 -0.2
3,712,788 + CCNA_03556 0.41 +0.5
3,712,791 - CCNA_03556 0.42 +0.6
3,712,795 + CCNA_03556 0.44 -0.2
3,712,913 + CCNA_03556 0.80 +0.2
3,712,913 + CCNA_03556 0.80 +0.2
3,712,920 - CCNA_03556 0.83 +0.5
3,712,921 - CCNA_03556 0.83 -0.7
3,713,083 - +0.3
3,713,103 + -0.6
3,713,174 - CCNA_03557 0.12 +0.6
3,713,201 - CCNA_03557 0.16 +1.0
3,713,252 - CCNA_03557 0.23 +0.3
3,713,316 - CCNA_03557 0.32 -0.1
3,713,316 - CCNA_03557 0.32 +0.2
3,713,326 - CCNA_03557 0.33 +0.1
3,713,330 + CCNA_03557 0.34 +0.4
3,713,338 - CCNA_03557 0.35 +0.7
3,713,338 - CCNA_03557 0.35 -0.3
3,713,381 + CCNA_03557 0.41 +0.9
3,713,418 - CCNA_03557 0.46 +0.4
3,713,524 - CCNA_03557 0.60 +1.0
3,713,547 - CCNA_03557 0.64 +0.2
3,713,547 - CCNA_03557 0.64 +0.2
3,713,547 - CCNA_03557 0.64 -0.2
3,713,578 + CCNA_03557 0.68 -0.6
3,713,701 + CCNA_03557 0.85 +0.7
3,713,706 + CCNA_03557 0.86 +0.2
3,713,869 - +0.3
3,713,881 + -0.6

Or see this region's nucleotide sequence