Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03471 and CCNA_03472 are separated by 74 nucleotides CCNA_03472 and CCNA_03473 are separated by 179 nucleotides CCNA_03473 and CCNA_03474 overlap by 4 nucleotides CCNA_03474 and CCNA_03475 are separated by 81 nucleotides
CCNA_03471: CCNA_03471 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 3,637,666 to 3,638,625
_03471
CCNA_03472: CCNA_03472 - hypothetical protein, at 3,638,700 to 3,638,969
_03472
CCNA_03473: CCNA_03473 - death on curing toxin protein doc, at 3,639,149 to 3,639,541
_03473
CCNA_03474: CCNA_03474 - SpoVT-AbrB family transcription factor, phd antitoxin, at 3,639,538 to 3,639,765
_03474
CCNA_03475: CCNA_03475 - homoserine kinase, at 3,639,847 to 3,640,800
_03475
Position (kb)
3638
3639 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3638.610 kb on - strand at 3638.620 kb on + strand at 3638.627 kb on - strand at 3638.637 kb on + strand at 3638.638 kb on - strand at 3638.661 kb on - strand at 3638.687 kb on + strand at 3638.736 kb on - strand, within CCNA_03472 at 3638.746 kb on + strand, within CCNA_03472 at 3638.764 kb on - strand, within CCNA_03472 at 3638.807 kb on + strand, within CCNA_03472 at 3638.813 kb on - strand, within CCNA_03472 at 3638.864 kb on - strand, within CCNA_03472 at 3638.884 kb on + strand, within CCNA_03472 at 3638.902 kb on + strand, within CCNA_03472 at 3638.910 kb on - strand, within CCNA_03472 at 3638.910 kb on - strand, within CCNA_03472 at 3638.911 kb on - strand, within CCNA_03472 at 3638.916 kb on + strand, within CCNA_03472 at 3638.958 kb on + strand at 3638.958 kb on + strand at 3638.958 kb on + strand at 3638.958 kb on + strand at 3638.958 kb on + strand at 3638.958 kb on + strand at 3638.963 kb on + strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.966 kb on - strand at 3638.968 kb on + strand at 3638.971 kb on - strand at 3638.976 kb on - strand at 3638.981 kb on - strand at 3638.986 kb on - strand at 3639.022 kb on - strand at 3639.029 kb on + strand at 3639.039 kb on + strand at 3639.039 kb on + strand at 3639.039 kb on + strand at 3639.039 kb on + strand at 3639.045 kb on - strand at 3639.047 kb on - strand at 3639.047 kb on - strand at 3639.047 kb on - strand at 3639.047 kb on - strand at 3639.052 kb on - strand at 3639.088 kb on - strand at 3639.105 kb on + strand at 3639.105 kb on - strand at 3639.112 kb on - strand at 3639.115 kb on + strand at 3639.122 kb on - strand at 3639.123 kb on - strand at 3639.231 kb on + strand, within CCNA_03473 at 3639.231 kb on + strand, within CCNA_03473 at 3639.239 kb on - strand, within CCNA_03473 at 3639.239 kb on - strand, within CCNA_03473 at 3639.348 kb on + strand, within CCNA_03473 at 3639.363 kb on + strand, within CCNA_03473 at 3639.384 kb on + strand, within CCNA_03473 at 3639.425 kb on + strand, within CCNA_03473 at 3639.433 kb on - strand, within CCNA_03473 at 3639.457 kb on + strand, within CCNA_03473 at 3639.477 kb on - strand, within CCNA_03473 at 3639.479 kb on + strand, within CCNA_03473 at 3639.487 kb on - strand, within CCNA_03473 at 3639.493 kb on + strand, within CCNA_03473 at 3639.526 kb on + strand at 3639.547 kb on - strand at 3639.547 kb on - strand at 3639.692 kb on + strand, within CCNA_03474 at 3639.692 kb on + strand, within CCNA_03474 at 3639.791 kb on + strand at 3639.843 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,638,610 - -0.1 3,638,620 + -0.6 3,638,627 - +0.6 3,638,637 + -0.5 3,638,638 - -0.5 3,638,661 - +2.5 3,638,687 + -0.5 3,638,736 - CCNA_03472 0.13 -0.5 3,638,746 + CCNA_03472 0.17 +0.2 3,638,764 - CCNA_03472 0.24 +0.5 3,638,807 + CCNA_03472 0.40 +1.5 3,638,813 - CCNA_03472 0.42 +0.5 3,638,864 - CCNA_03472 0.61 +0.6 3,638,884 + CCNA_03472 0.68 -0.4 3,638,902 + CCNA_03472 0.75 +0.6 3,638,910 - CCNA_03472 0.78 -1.3 3,638,910 - CCNA_03472 0.78 +1.2 3,638,911 - CCNA_03472 0.78 -0.3 3,638,916 + CCNA_03472 0.80 +3.0 3,638,958 + -0.4 3,638,958 + +0.1 3,638,958 + +0.3 3,638,958 + +0.8 3,638,958 + +0.8 3,638,958 + +0.1 3,638,963 + +0.4 3,638,966 - -1.8 3,638,966 - -0.1 3,638,966 - -0.5 3,638,966 - +0.5 3,638,966 - +0.5 3,638,966 - -0.4 3,638,966 - -0.2 3,638,966 - -1.3 3,638,968 + -2.5 3,638,971 - -1.4 3,638,976 - -0.0 3,638,981 - -0.5 3,638,986 - +0.2 3,639,022 - -0.5 3,639,029 + +0.4 3,639,039 + -0.5 3,639,039 + -0.3 3,639,039 + -1.3 3,639,039 + -0.2 3,639,045 - -1.3 3,639,047 - -0.2 3,639,047 - +0.6 3,639,047 - -0.1 3,639,047 - -0.2 3,639,052 - +1.5 3,639,088 - -0.4 3,639,105 + -1.5 3,639,105 - +0.0 3,639,112 - -0.8 3,639,115 + -0.6 3,639,122 - +1.5 3,639,123 - +0.0 3,639,231 + CCNA_03473 0.21 -0.8 3,639,231 + CCNA_03473 0.21 -0.6 3,639,239 - CCNA_03473 0.23 -0.0 3,639,239 - CCNA_03473 0.23 +0.2 3,639,348 + CCNA_03473 0.51 +0.7 3,639,363 + CCNA_03473 0.54 +0.2 3,639,384 + CCNA_03473 0.60 -0.5 3,639,425 + CCNA_03473 0.70 -2.1 3,639,433 - CCNA_03473 0.72 -0.8 3,639,457 + CCNA_03473 0.78 -1.3 3,639,477 - CCNA_03473 0.83 +0.5 3,639,479 + CCNA_03473 0.84 -2.7 3,639,487 - CCNA_03473 0.86 +0.4 3,639,493 + CCNA_03473 0.88 -1.1 3,639,526 + -0.6 3,639,547 - +0.1 3,639,547 - +0.4 3,639,692 + CCNA_03474 0.68 +0.0 3,639,692 + CCNA_03474 0.68 +0.2 3,639,791 + +0.6 3,639,843 + -0.1
Or see this region's nucleotide sequence