Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03372

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03370 and CCNA_03371 overlap by 4 nucleotidesCCNA_03371 and CCNA_03372 are separated by 152 nucleotidesCCNA_03372 and CCNA_03373 are separated by 131 nucleotidesCCNA_03373 and CCNA_03374 are separated by 88 nucleotides CCNA_03370: CCNA_03370 - acetyltransferase, at 3,546,207 to 3,546,728 _03370 CCNA_03371: CCNA_03371 - bacterioferritin, at 3,546,725 to 3,547,204 _03371 CCNA_03372: CCNA_03372 - bacterioferritin-associated ferredoxin, at 3,547,357 to 3,547,542 _03372 CCNA_03373: CCNA_03373 - thiamin-phosphate pyrophosphorylase, at 3,547,674 to 3,548,318 _03373 CCNA_03374: CCNA_03374 - hypothetical protein, at 3,548,407 to 3,548,814 _03374 Position (kb) 3547 3548Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3546.430 kb on - strand, within CCNA_03370at 3546.432 kb on + strand, within CCNA_03370at 3546.432 kb on + strand, within CCNA_03370at 3546.448 kb on + strand, within CCNA_03370at 3546.466 kb on - strand, within CCNA_03370at 3546.501 kb on + strand, within CCNA_03370at 3546.501 kb on + strand, within CCNA_03370at 3546.501 kb on + strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.509 kb on - strand, within CCNA_03370at 3546.514 kb on - strand, within CCNA_03370at 3546.514 kb on - strand, within CCNA_03370at 3546.543 kb on - strand, within CCNA_03370at 3546.621 kb on - strand, within CCNA_03370at 3546.632 kb on + strand, within CCNA_03370at 3546.636 kb on - strand, within CCNA_03370at 3546.664 kb on - strand, within CCNA_03370at 3546.675 kb on + strand, within CCNA_03370at 3546.731 kb on - strandat 3546.758 kb on + strandat 3546.772 kb on - strandat 3546.777 kb on + strand, within CCNA_03371at 3546.809 kb on + strand, within CCNA_03371at 3546.809 kb on + strand, within CCNA_03371at 3546.825 kb on + strand, within CCNA_03371at 3546.876 kb on + strand, within CCNA_03371at 3546.894 kb on - strand, within CCNA_03371at 3546.894 kb on - strand, within CCNA_03371at 3546.907 kb on - strand, within CCNA_03371at 3546.912 kb on + strand, within CCNA_03371at 3546.912 kb on + strand, within CCNA_03371at 3546.995 kb on - strand, within CCNA_03371at 3547.008 kb on + strand, within CCNA_03371at 3547.016 kb on - strand, within CCNA_03371at 3547.031 kb on - strand, within CCNA_03371at 3547.072 kb on + strand, within CCNA_03371at 3547.107 kb on + strand, within CCNA_03371at 3547.167 kb on + strandat 3547.167 kb on + strandat 3547.167 kb on + strandat 3547.167 kb on + strandat 3547.175 kb on - strandat 3547.195 kb on - strandat 3547.201 kb on + strandat 3547.272 kb on + strandat 3547.380 kb on - strand, within CCNA_03372at 3547.620 kb on + strandat 3547.626 kb on - strandat 3547.648 kb on - strandat 3548.282 kb on - strandat 3548.298 kb on + strandat 3548.306 kb on - strandat 3548.356 kb on - strandat 3548.358 kb on + strandat 3548.366 kb on - strandat 3548.366 kb on - strandat 3548.461 kb on + strand, within CCNA_03374at 3548.500 kb on + strand, within CCNA_03374

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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3,546,430 - CCNA_03370 0.43 -0.2
3,546,432 + CCNA_03370 0.43 -0.8
3,546,432 + CCNA_03370 0.43 +0.2
3,546,448 + CCNA_03370 0.46 -0.0
3,546,466 - CCNA_03370 0.50 +0.3
3,546,501 + CCNA_03370 0.56 +0.5
3,546,501 + CCNA_03370 0.56 +1.3
3,546,501 + CCNA_03370 0.56 -0.4
3,546,509 - CCNA_03370 0.58 +0.6
3,546,509 - CCNA_03370 0.58 -0.1
3,546,509 - CCNA_03370 0.58 -0.2
3,546,509 - CCNA_03370 0.58 +0.0
3,546,509 - CCNA_03370 0.58 +1.1
3,546,509 - CCNA_03370 0.58 +1.8
3,546,514 - CCNA_03370 0.59 +0.1
3,546,514 - CCNA_03370 0.59 +1.2
3,546,543 - CCNA_03370 0.64 +0.5
3,546,621 - CCNA_03370 0.79 +0.4
3,546,632 + CCNA_03370 0.81 +1.8
3,546,636 - CCNA_03370 0.82 +0.2
3,546,664 - CCNA_03370 0.88 +1.0
3,546,675 + CCNA_03370 0.90 -0.1
3,546,731 - +0.2
3,546,758 + -0.2
3,546,772 - +0.1
3,546,777 + CCNA_03371 0.11 +0.2
3,546,809 + CCNA_03371 0.17 -1.7
3,546,809 + CCNA_03371 0.17 -0.3
3,546,825 + CCNA_03371 0.21 -2.8
3,546,876 + CCNA_03371 0.31 +0.6
3,546,894 - CCNA_03371 0.35 +0.1
3,546,894 - CCNA_03371 0.35 +1.1
3,546,907 - CCNA_03371 0.38 +0.2
3,546,912 + CCNA_03371 0.39 -0.3
3,546,912 + CCNA_03371 0.39 -0.6
3,546,995 - CCNA_03371 0.56 +0.6
3,547,008 + CCNA_03371 0.59 -0.9
3,547,016 - CCNA_03371 0.61 -0.1
3,547,031 - CCNA_03371 0.64 +0.5
3,547,072 + CCNA_03371 0.72 -1.4
3,547,107 + CCNA_03371 0.80 -1.3
3,547,167 + -0.3
3,547,167 + -0.5
3,547,167 + -1.9
3,547,167 + -0.4
3,547,175 - +0.3
3,547,195 - +0.0
3,547,201 + -0.5
3,547,272 + -1.6
3,547,380 - CCNA_03372 0.12 +0.7
3,547,620 + +0.0
3,547,626 - -0.3
3,547,648 - -0.5
3,548,282 - +0.5
3,548,298 + +3.0
3,548,306 - +1.5
3,548,356 - -0.8
3,548,358 + -1.0
3,548,366 - -1.8
3,548,366 - +0.3
3,548,461 + CCNA_03374 0.13 -0.4
3,548,500 + CCNA_03374 0.23 -0.5

Or see this region's nucleotide sequence