Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03211 and CCNA_03212 are separated by 30 nucleotides CCNA_03212 and CCNA_03213 are separated by 115 nucleotides CCNA_03213 and CCNA_03214 are separated by 8 nucleotides CCNA_03214 and CCNA_03215 overlap by 2 nucleotides
CCNA_03211: CCNA_03211 - L-Ala-D/L-Glu racemase, at 3,374,076 to 3,375,077
_03211
CCNA_03212: CCNA_03212 - hypothetical protein, at 3,375,108 to 3,375,323
_03212
CCNA_03213: CCNA_03213 - polyhydroxyalkanoic acid system protein, at 3,375,439 to 3,375,747
_03213
CCNA_03214: CCNA_03214 - hypothetical protein, at 3,375,756 to 3,376,166
_03214
CCNA_03215: CCNA_03215 - ARO8 family aminotransferase/HTH DNA-binding protein, at 3,376,165 to 3,377,580
_03215
Position (kb)
3375
3376 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3374.146 kb on + strand at 3374.161 kb on - strand at 3374.199 kb on - strand, within CCNA_03211 at 3374.229 kb on + strand, within CCNA_03211 at 3374.290 kb on - strand, within CCNA_03211 at 3374.306 kb on + strand, within CCNA_03211 at 3374.358 kb on - strand, within CCNA_03211 at 3374.411 kb on - strand, within CCNA_03211 at 3374.417 kb on + strand, within CCNA_03211 at 3374.443 kb on + strand, within CCNA_03211 at 3374.493 kb on - strand, within CCNA_03211 at 3374.519 kb on - strand, within CCNA_03211 at 3374.519 kb on - strand, within CCNA_03211 at 3374.531 kb on - strand, within CCNA_03211 at 3374.547 kb on + strand, within CCNA_03211 at 3374.548 kb on + strand, within CCNA_03211 at 3374.580 kb on + strand, within CCNA_03211 at 3374.625 kb on + strand, within CCNA_03211 at 3374.647 kb on - strand, within CCNA_03211 at 3374.652 kb on - strand, within CCNA_03211 at 3374.665 kb on - strand, within CCNA_03211 at 3374.688 kb on - strand, within CCNA_03211 at 3374.760 kb on - strand, within CCNA_03211 at 3374.762 kb on + strand, within CCNA_03211 at 3374.803 kb on - strand, within CCNA_03211 at 3374.812 kb on - strand, within CCNA_03211 at 3374.833 kb on + strand, within CCNA_03211 at 3374.865 kb on - strand, within CCNA_03211 at 3374.904 kb on + strand, within CCNA_03211 at 3374.928 kb on + strand, within CCNA_03211 at 3374.928 kb on + strand, within CCNA_03211 at 3374.936 kb on - strand, within CCNA_03211 at 3374.958 kb on - strand, within CCNA_03211 at 3375.104 kb on + strand at 3375.108 kb on + strand at 3375.116 kb on - strand at 3375.147 kb on + strand, within CCNA_03212 at 3375.162 kb on - strand, within CCNA_03212 at 3375.192 kb on - strand, within CCNA_03212 at 3375.199 kb on + strand, within CCNA_03212 at 3375.199 kb on + strand, within CCNA_03212 at 3375.207 kb on - strand, within CCNA_03212 at 3375.207 kb on - strand, within CCNA_03212 at 3375.207 kb on - strand, within CCNA_03212 at 3375.220 kb on + strand, within CCNA_03212 at 3375.285 kb on - strand, within CCNA_03212 at 3375.492 kb on - strand, within CCNA_03213 at 3375.514 kb on - strand, within CCNA_03213 at 3375.583 kb on + strand, within CCNA_03213 at 3375.591 kb on + strand, within CCNA_03213 at 3375.598 kb on + strand, within CCNA_03213 at 3375.618 kb on - strand, within CCNA_03213 at 3375.644 kb on - strand, within CCNA_03213 at 3375.702 kb on + strand, within CCNA_03213 at 3375.702 kb on + strand, within CCNA_03213 at 3375.710 kb on - strand, within CCNA_03213 at 3375.828 kb on - strand, within CCNA_03214 at 3375.846 kb on + strand, within CCNA_03214 at 3375.849 kb on - strand, within CCNA_03214 at 3375.854 kb on - strand, within CCNA_03214 at 3375.861 kb on - strand, within CCNA_03214 at 3375.874 kb on - strand, within CCNA_03214 at 3375.945 kb on - strand, within CCNA_03214 at 3375.945 kb on - strand, within CCNA_03214 at 3375.956 kb on - strand, within CCNA_03214 at 3375.961 kb on - strand, within CCNA_03214 at 3375.963 kb on + strand, within CCNA_03214 at 3375.966 kb on - strand, within CCNA_03214 at 3376.029 kb on + strand, within CCNA_03214 at 3376.029 kb on + strand, within CCNA_03214 at 3376.031 kb on - strand, within CCNA_03214 at 3376.081 kb on + strand, within CCNA_03214 at 3376.089 kb on - strand, within CCNA_03214 at 3376.091 kb on + strand, within CCNA_03214 at 3376.149 kb on - strand at 3376.216 kb on + strand at 3376.322 kb on + strand, within CCNA_03215 at 3376.322 kb on + strand, within CCNA_03215
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,374,146 + +0.9 3,374,161 - +0.1 3,374,199 - CCNA_03211 0.12 +0.4 3,374,229 + CCNA_03211 0.15 -0.3 3,374,290 - CCNA_03211 0.21 +1.5 3,374,306 + CCNA_03211 0.23 -2.0 3,374,358 - CCNA_03211 0.28 +0.9 3,374,411 - CCNA_03211 0.33 +1.1 3,374,417 + CCNA_03211 0.34 +2.4 3,374,443 + CCNA_03211 0.37 -0.5 3,374,493 - CCNA_03211 0.42 +0.8 3,374,519 - CCNA_03211 0.44 -0.4 3,374,519 - CCNA_03211 0.44 -0.4 3,374,531 - CCNA_03211 0.45 +0.1 3,374,547 + CCNA_03211 0.47 +0.8 3,374,548 + CCNA_03211 0.47 -3.4 3,374,580 + CCNA_03211 0.50 -0.7 3,374,625 + CCNA_03211 0.55 -0.5 3,374,647 - CCNA_03211 0.57 -0.5 3,374,652 - CCNA_03211 0.57 +0.2 3,374,665 - CCNA_03211 0.59 +1.0 3,374,688 - CCNA_03211 0.61 -1.3 3,374,760 - CCNA_03211 0.68 -0.4 3,374,762 + CCNA_03211 0.68 -0.8 3,374,803 - CCNA_03211 0.73 +0.5 3,374,812 - CCNA_03211 0.73 +0.4 3,374,833 + CCNA_03211 0.76 -0.4 3,374,865 - CCNA_03211 0.79 -0.3 3,374,904 + CCNA_03211 0.83 -0.4 3,374,928 + CCNA_03211 0.85 -0.6 3,374,928 + CCNA_03211 0.85 +0.1 3,374,936 - CCNA_03211 0.86 -0.0 3,374,958 - CCNA_03211 0.88 +0.3 3,375,104 + +0.6 3,375,108 + -0.9 3,375,116 - +1.0 3,375,147 + CCNA_03212 0.18 -0.1 3,375,162 - CCNA_03212 0.25 +0.7 3,375,192 - CCNA_03212 0.39 -0.6 3,375,199 + CCNA_03212 0.42 -0.4 3,375,199 + CCNA_03212 0.42 +0.1 3,375,207 - CCNA_03212 0.46 +0.1 3,375,207 - CCNA_03212 0.46 +1.0 3,375,207 - CCNA_03212 0.46 +0.4 3,375,220 + CCNA_03212 0.52 +1.3 3,375,285 - CCNA_03212 0.82 -0.6 3,375,492 - CCNA_03213 0.17 -0.0 3,375,514 - CCNA_03213 0.24 +0.1 3,375,583 + CCNA_03213 0.47 +0.5 3,375,591 + CCNA_03213 0.49 -0.8 3,375,598 + CCNA_03213 0.51 +0.4 3,375,618 - CCNA_03213 0.58 +0.8 3,375,644 - CCNA_03213 0.66 -1.0 3,375,702 + CCNA_03213 0.85 -0.4 3,375,702 + CCNA_03213 0.85 -0.3 3,375,710 - CCNA_03213 0.88 +1.1 3,375,828 - CCNA_03214 0.18 -0.1 3,375,846 + CCNA_03214 0.22 -0.4 3,375,849 - CCNA_03214 0.23 +0.0 3,375,854 - CCNA_03214 0.24 -0.4 3,375,861 - CCNA_03214 0.26 +1.0 3,375,874 - CCNA_03214 0.29 +0.8 3,375,945 - CCNA_03214 0.46 +0.1 3,375,945 - CCNA_03214 0.46 +0.4 3,375,956 - CCNA_03214 0.49 +0.3 3,375,961 - CCNA_03214 0.50 -0.2 3,375,963 + CCNA_03214 0.50 +0.2 3,375,966 - CCNA_03214 0.51 -0.3 3,376,029 + CCNA_03214 0.66 -0.6 3,376,029 + CCNA_03214 0.66 -1.5 3,376,031 - CCNA_03214 0.67 -1.8 3,376,081 + CCNA_03214 0.79 -1.5 3,376,089 - CCNA_03214 0.81 -0.0 3,376,091 + CCNA_03214 0.82 -1.8 3,376,149 - +1.3 3,376,216 + -0.5 3,376,322 + CCNA_03215 0.11 +0.2 3,376,322 + CCNA_03215 0.11 -0.2
Or see this region's nucleotide sequence