Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03032 and CCNA_03033 are separated by 83 nucleotides CCNA_03033 and CCNA_03034 are separated by 11 nucleotides CCNA_03034 and CCNA_03035 are separated by 75 nucleotides
CCNA_03032: CCNA_03032 - leucyl aminopeptidase, at 3,186,588 to 3,187,988
_03032
CCNA_03033: CCNA_03033 - Flp pilus assembly protein TadD, at 3,188,072 to 3,188,896
_03033
CCNA_03034: CCNA_03034 - hypothetical protein, at 3,188,908 to 3,189,102
_03034
CCNA_03035: CCNA_03035 - TadC-related pilus assembly protein, at 3,189,178 to 3,190,266
_03035
Position (kb)
3188
3189
3190 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3187.909 kb on + strand at 3187.917 kb on - strand at 3187.917 kb on - strand at 3187.917 kb on - strand at 3187.927 kb on - strand at 3187.954 kb on + strand at 3187.959 kb on + strand at 3187.962 kb on - strand at 3187.978 kb on + strand at 3188.021 kb on + strand at 3188.063 kb on - strand at 3188.122 kb on + strand at 3188.130 kb on - strand at 3188.155 kb on + strand, within CCNA_03033 at 3188.163 kb on - strand, within CCNA_03033 at 3188.163 kb on - strand, within CCNA_03033 at 3188.206 kb on + strand, within CCNA_03033 at 3188.214 kb on - strand, within CCNA_03033 at 3188.227 kb on - strand, within CCNA_03033 at 3188.246 kb on - strand, within CCNA_03033 at 3188.310 kb on + strand, within CCNA_03033 at 3188.315 kb on + strand, within CCNA_03033 at 3188.318 kb on - strand, within CCNA_03033 at 3188.320 kb on + strand, within CCNA_03033 at 3188.425 kb on - strand, within CCNA_03033 at 3188.439 kb on + strand, within CCNA_03033 at 3188.495 kb on + strand, within CCNA_03033 at 3188.532 kb on + strand, within CCNA_03033 at 3188.533 kb on - strand, within CCNA_03033 at 3188.607 kb on - strand, within CCNA_03033 at 3188.685 kb on + strand, within CCNA_03033 at 3188.693 kb on - strand, within CCNA_03033 at 3188.698 kb on - strand, within CCNA_03033 at 3188.854 kb on + strand at 3188.862 kb on + strand at 3188.920 kb on + strand at 3188.937 kb on + strand, within CCNA_03034 at 3188.955 kb on - strand, within CCNA_03034 at 3188.995 kb on + strand, within CCNA_03034 at 3189.046 kb on + strand, within CCNA_03034 at 3189.110 kb on + strand at 3189.130 kb on + strand at 3189.130 kb on + strand at 3189.130 kb on + strand at 3189.135 kb on + strand at 3189.147 kb on + strand at 3189.148 kb on - strand at 3189.148 kb on - strand at 3189.148 kb on - strand at 3189.148 kb on - strand at 3189.148 kb on - strand at 3189.149 kb on - strand at 3189.149 kb on - strand at 3189.188 kb on - strand at 3189.188 kb on - strand at 3189.188 kb on - strand at 3189.191 kb on + strand at 3189.222 kb on - strand at 3189.255 kb on - strand at 3189.273 kb on - strand at 3189.274 kb on - strand at 3189.277 kb on + strand at 3189.305 kb on + strand, within CCNA_03035 at 3189.343 kb on - strand, within CCNA_03035 at 3189.355 kb on + strand, within CCNA_03035 at 3189.363 kb on - strand, within CCNA_03035 at 3189.380 kb on + strand, within CCNA_03035 at 3189.380 kb on + strand, within CCNA_03035 at 3189.380 kb on + strand, within CCNA_03035 at 3189.388 kb on - strand, within CCNA_03035 at 3189.388 kb on - strand, within CCNA_03035 at 3189.428 kb on - strand, within CCNA_03035 at 3189.448 kb on + strand, within CCNA_03035 at 3189.531 kb on + strand, within CCNA_03035 at 3189.586 kb on + strand, within CCNA_03035 at 3189.614 kb on - strand, within CCNA_03035 at 3189.630 kb on + strand, within CCNA_03035 at 3189.672 kb on + strand, within CCNA_03035 at 3189.685 kb on - strand, within CCNA_03035 at 3189.685 kb on - strand, within CCNA_03035 at 3189.688 kb on + strand, within CCNA_03035 at 3189.691 kb on - strand, within CCNA_03035 at 3189.707 kb on + strand, within CCNA_03035 at 3189.740 kb on - strand, within CCNA_03035 at 3189.781 kb on + strand, within CCNA_03035 at 3189.789 kb on - strand, within CCNA_03035 at 3189.825 kb on + strand, within CCNA_03035 at 3189.833 kb on - strand, within CCNA_03035 at 3189.833 kb on - strand, within CCNA_03035 at 3189.833 kb on - strand, within CCNA_03035 at 3189.833 kb on - strand, within CCNA_03035 at 3189.926 kb on + strand, within CCNA_03035 at 3189.985 kb on - strand, within CCNA_03035 at 3189.987 kb on + strand, within CCNA_03035 at 3189.990 kb on - strand, within CCNA_03035 at 3190.062 kb on + strand, within CCNA_03035
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,187,909 + -0.8 3,187,917 - +0.2 3,187,917 - +0.7 3,187,917 - +0.2 3,187,927 - -0.9 3,187,954 + -0.8 3,187,959 + +0.5 3,187,962 - +0.5 3,187,978 + +1.0 3,188,021 + -1.0 3,188,063 - -0.1 3,188,122 + -1.2 3,188,130 - +0.3 3,188,155 + CCNA_03033 0.10 +0.1 3,188,163 - CCNA_03033 0.11 +2.5 3,188,163 - CCNA_03033 0.11 -1.4 3,188,206 + CCNA_03033 0.16 -0.2 3,188,214 - CCNA_03033 0.17 +1.5 3,188,227 - CCNA_03033 0.19 +0.4 3,188,246 - CCNA_03033 0.21 +0.5 3,188,310 + CCNA_03033 0.29 -0.4 3,188,315 + CCNA_03033 0.29 -1.8 3,188,318 - CCNA_03033 0.30 +0.6 3,188,320 + CCNA_03033 0.30 +1.1 3,188,425 - CCNA_03033 0.43 -0.5 3,188,439 + CCNA_03033 0.44 -0.4 3,188,495 + CCNA_03033 0.51 +0.4 3,188,532 + CCNA_03033 0.56 -0.0 3,188,533 - CCNA_03033 0.56 +0.0 3,188,607 - CCNA_03033 0.65 -0.9 3,188,685 + CCNA_03033 0.74 +1.5 3,188,693 - CCNA_03033 0.75 +1.1 3,188,698 - CCNA_03033 0.76 -0.3 3,188,854 + -0.5 3,188,862 + +0.2 3,188,920 + +1.6 3,188,937 + CCNA_03034 0.15 +0.6 3,188,955 - CCNA_03034 0.24 +0.9 3,188,995 + CCNA_03034 0.45 +0.2 3,189,046 + CCNA_03034 0.71 +0.1 3,189,110 + +0.8 3,189,130 + -0.4 3,189,130 + -0.6 3,189,130 + -1.9 3,189,135 + +0.4 3,189,147 + -0.5 3,189,148 - +0.9 3,189,148 - +0.8 3,189,148 - -0.2 3,189,148 - +0.4 3,189,148 - +0.2 3,189,149 - +0.1 3,189,149 - +0.4 3,189,188 - -0.1 3,189,188 - -0.1 3,189,188 - +0.3 3,189,191 + +0.8 3,189,222 - -1.0 3,189,255 - +0.6 3,189,273 - +1.1 3,189,274 - +0.3 3,189,277 + -1.2 3,189,305 + CCNA_03035 0.12 -2.7 3,189,343 - CCNA_03035 0.15 +0.1 3,189,355 + CCNA_03035 0.16 +0.4 3,189,363 - CCNA_03035 0.17 +0.1 3,189,380 + CCNA_03035 0.19 -0.3 3,189,380 + CCNA_03035 0.19 -1.2 3,189,380 + CCNA_03035 0.19 +0.7 3,189,388 - CCNA_03035 0.19 +0.1 3,189,388 - CCNA_03035 0.19 -0.6 3,189,428 - CCNA_03035 0.23 +0.0 3,189,448 + CCNA_03035 0.25 -1.3 3,189,531 + CCNA_03035 0.32 +0.0 3,189,586 + CCNA_03035 0.37 -0.7 3,189,614 - CCNA_03035 0.40 -0.3 3,189,630 + CCNA_03035 0.42 -0.1 3,189,672 + CCNA_03035 0.45 -0.2 3,189,685 - CCNA_03035 0.47 +0.3 3,189,685 - CCNA_03035 0.47 +0.6 3,189,688 + CCNA_03035 0.47 +0.7 3,189,691 - CCNA_03035 0.47 -2.5 3,189,707 + CCNA_03035 0.49 -1.6 3,189,740 - CCNA_03035 0.52 +1.0 3,189,781 + CCNA_03035 0.55 -0.5 3,189,789 - CCNA_03035 0.56 +0.7 3,189,825 + CCNA_03035 0.59 +0.8 3,189,833 - CCNA_03035 0.60 -0.1 3,189,833 - CCNA_03035 0.60 +0.6 3,189,833 - CCNA_03035 0.60 +0.3 3,189,833 - CCNA_03035 0.60 +0.7 3,189,926 + CCNA_03035 0.69 -0.5 3,189,985 - CCNA_03035 0.74 +0.5 3,189,987 + CCNA_03035 0.74 -0.8 3,189,990 - CCNA_03035 0.75 -1.2 3,190,062 + CCNA_03035 0.81 -0.1
Or see this region's nucleotide sequence