Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02759 and CCNA_02760 are separated by 60 nucleotides CCNA_02760 and CCNA_03976 overlap by 1 nucleotides CCNA_03976 and CCNA_02761 overlap by 11 nucleotides CCNA_02761 and CCNA_02762 are separated by 205 nucleotides
CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135
_02759
CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462
_02760
CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683
_03976
CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918
_02761
CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789
_02762
Position (kb)
2923
2924 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2923.108 kb on + strand at 2923.116 kb on - strand at 2923.242 kb on + strand, within CCNA_02760 at 2923.250 kb on - strand, within CCNA_02760 at 2923.260 kb on - strand, within CCNA_02760 at 2923.297 kb on + strand, within CCNA_02760 at 2923.352 kb on + strand, within CCNA_02760 at 2923.372 kb on + strand, within CCNA_02760 at 2923.408 kb on - strand, within CCNA_02760 at 2923.423 kb on + strand, within CCNA_02760 at 2923.477 kb on - strand at 2923.500 kb on + strand, within CCNA_03976 at 2923.563 kb on - strand, within CCNA_03976 at 2923.568 kb on - strand, within CCNA_03976 at 2923.684 kb on + strand at 2923.692 kb on - strand at 2923.712 kb on - strand, within CCNA_02761 at 2923.712 kb on - strand, within CCNA_02761 at 2923.786 kb on - strand, within CCNA_02761 at 2923.791 kb on - strand, within CCNA_02761 at 2923.834 kb on + strand, within CCNA_02761 at 2923.851 kb on + strand, within CCNA_02761 at 2923.856 kb on + strand, within CCNA_02761 at 2923.864 kb on - strand, within CCNA_02761 at 2923.885 kb on + strand, within CCNA_02761 at 2923.907 kb on - strand at 2923.912 kb on - strand at 2923.968 kb on - strand at 2923.995 kb on + strand at 2924.005 kb on - strand at 2924.108 kb on - strand at 2924.134 kb on - strand at 2924.188 kb on - strand at 2924.193 kb on + strand, within CCNA_02762 at 2924.238 kb on - strand, within CCNA_02762 at 2924.238 kb on - strand, within CCNA_02762 at 2924.243 kb on - strand, within CCNA_02762 at 2924.248 kb on + strand, within CCNA_02762 at 2924.276 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.299 kb on + strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.307 kb on - strand, within CCNA_02762 at 2924.324 kb on + strand, within CCNA_02762 at 2924.324 kb on + strand, within CCNA_02762 at 2924.332 kb on - strand, within CCNA_02762 at 2924.360 kb on + strand, within CCNA_02762 at 2924.368 kb on - strand, within CCNA_02762 at 2924.368 kb on - strand, within CCNA_02762 at 2924.380 kb on - strand, within CCNA_02762 at 2924.393 kb on + strand, within CCNA_02762 at 2924.423 kb on + strand, within CCNA_02762 at 2924.429 kb on - strand, within CCNA_02762 at 2924.431 kb on - strand, within CCNA_02762 at 2924.441 kb on - strand, within CCNA_02762 at 2924.533 kb on + strand, within CCNA_02762 at 2924.540 kb on - strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.547 kb on + strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.555 kb on - strand, within CCNA_02762 at 2924.573 kb on + strand, within CCNA_02762 at 2924.581 kb on - strand, within CCNA_02762 at 2924.594 kb on + strand, within CCNA_02762 at 2924.597 kb on - strand, within CCNA_02762 at 2924.602 kb on - strand, within CCNA_02762 at 2924.609 kb on - strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.643 kb on + strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762 at 2924.651 kb on - strand, within CCNA_02762 at 2924.699 kb on - strand, within CCNA_02762 at 2924.699 kb on - strand, within CCNA_02762 at 2924.728 kb on + strand at 2924.728 kb on + strand at 2924.747 kb on + strand at 2924.766 kb on - strand at 2924.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,923,108 + +0.3 2,923,116 - -0.9 2,923,242 + CCNA_02760 0.17 +0.9 2,923,250 - CCNA_02760 0.20 -1.2 2,923,260 - CCNA_02760 0.24 -1.7 2,923,297 + CCNA_02760 0.38 +0.6 2,923,352 + CCNA_02760 0.58 +0.7 2,923,372 + CCNA_02760 0.66 +0.3 2,923,408 - CCNA_02760 0.79 -0.3 2,923,423 + CCNA_02760 0.85 +0.2 2,923,477 - +1.3 2,923,500 + CCNA_03976 0.17 +0.2 2,923,563 - CCNA_03976 0.45 -1.3 2,923,568 - CCNA_03976 0.48 +0.8 2,923,684 + -0.5 2,923,692 - +1.8 2,923,712 - CCNA_02761 0.16 -0.9 2,923,712 - CCNA_02761 0.16 -0.2 2,923,786 - CCNA_02761 0.46 -2.1 2,923,791 - CCNA_02761 0.48 +0.4 2,923,834 + CCNA_02761 0.65 -0.8 2,923,851 + CCNA_02761 0.72 +0.5 2,923,856 + CCNA_02761 0.74 +0.1 2,923,864 - CCNA_02761 0.78 +0.3 2,923,885 + CCNA_02761 0.86 +0.4 2,923,907 - +0.7 2,923,912 - -0.1 2,923,968 - +1.0 2,923,995 + +0.2 2,924,005 - +0.3 2,924,108 - +0.6 2,924,134 - -0.2 2,924,188 - -1.3 2,924,193 + CCNA_02762 0.10 +0.3 2,924,238 - CCNA_02762 0.17 +0.1 2,924,238 - CCNA_02762 0.17 -0.3 2,924,243 - CCNA_02762 0.18 -0.6 2,924,248 + CCNA_02762 0.19 -0.4 2,924,276 + CCNA_02762 0.23 -0.3 2,924,299 + CCNA_02762 0.26 -0.2 2,924,299 + CCNA_02762 0.26 -0.3 2,924,299 + CCNA_02762 0.26 +0.2 2,924,299 + CCNA_02762 0.26 -1.1 2,924,299 + CCNA_02762 0.26 +0.7 2,924,307 - CCNA_02762 0.27 +2.6 2,924,307 - CCNA_02762 0.27 +1.5 2,924,307 - CCNA_02762 0.27 +0.2 2,924,324 + CCNA_02762 0.30 +0.6 2,924,324 + CCNA_02762 0.30 +0.4 2,924,332 - CCNA_02762 0.31 +1.1 2,924,360 + CCNA_02762 0.35 +0.2 2,924,368 - CCNA_02762 0.37 -0.2 2,924,368 - CCNA_02762 0.37 +1.4 2,924,380 - CCNA_02762 0.38 -2.6 2,924,393 + CCNA_02762 0.40 +0.3 2,924,423 + CCNA_02762 0.45 +0.4 2,924,429 - CCNA_02762 0.46 +0.5 2,924,431 - CCNA_02762 0.46 +0.7 2,924,441 - CCNA_02762 0.48 +0.8 2,924,533 + CCNA_02762 0.61 -1.3 2,924,540 - CCNA_02762 0.62 +0.5 2,924,547 + CCNA_02762 0.64 +0.1 2,924,547 + CCNA_02762 0.64 -1.8 2,924,547 + CCNA_02762 0.64 -0.5 2,924,547 + CCNA_02762 0.64 -0.1 2,924,547 + CCNA_02762 0.64 -0.3 2,924,555 - CCNA_02762 0.65 +0.4 2,924,555 - CCNA_02762 0.65 -0.2 2,924,555 - CCNA_02762 0.65 -0.9 2,924,555 - CCNA_02762 0.65 +0.5 2,924,555 - CCNA_02762 0.65 -0.1 2,924,573 + CCNA_02762 0.67 -0.4 2,924,581 - CCNA_02762 0.69 -1.7 2,924,594 + CCNA_02762 0.71 -0.9 2,924,597 - CCNA_02762 0.71 +0.4 2,924,602 - CCNA_02762 0.72 +0.7 2,924,609 - CCNA_02762 0.73 -0.0 2,924,643 + CCNA_02762 0.78 -0.3 2,924,643 + CCNA_02762 0.78 +1.0 2,924,643 + CCNA_02762 0.78 -3.2 2,924,643 + CCNA_02762 0.78 +0.2 2,924,651 - CCNA_02762 0.79 -0.4 2,924,651 - CCNA_02762 0.79 +0.2 2,924,651 - CCNA_02762 0.79 -1.6 2,924,699 - CCNA_02762 0.86 -0.1 2,924,699 - CCNA_02762 0.86 -0.8 2,924,728 + +0.3 2,924,728 + +0.4 2,924,747 + +0.8 2,924,766 - +0.6 2,924,918 + +0.7
Or see this region's nucleotide sequence