Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02733 and CCNA_02734 are separated by 0 nucleotides CCNA_02734 and CCNA_02735 are separated by 43 nucleotides CCNA_02735 and CCNA_02736 are separated by 4 nucleotides
CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212
_02733
CCNA_02734: CCNA_02734 - serine acetyltransferase, at 2,896,213 to 2,897,085
_02734
CCNA_02735: CCNA_02735 - ADP-ribose pyrophosphatase family protein, at 2,897,129 to 2,897,845
_02735
CCNA_02736: CCNA_02736 - nitroreductase family, at 2,897,850 to 2,898,464
_02736
Position (kb)
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2895.256 kb on - strand at 2895.272 kb on - strand at 2895.297 kb on - strand at 2895.307 kb on - strand at 2895.307 kb on - strand at 2895.314 kb on + strand at 2895.322 kb on - strand at 2895.350 kb on - strand at 2895.383 kb on + strand at 2895.383 kb on - strand at 2895.462 kb on + strand at 2895.467 kb on + strand at 2895.467 kb on + strand at 2895.470 kb on - strand at 2895.475 kb on - strand at 2895.475 kb on - strand at 2895.516 kb on - strand, within CCNA_02733 at 2895.523 kb on + strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.591 kb on - strand, within CCNA_02733 at 2895.592 kb on - strand, within CCNA_02733 at 2895.611 kb on + strand, within CCNA_02733 at 2895.647 kb on - strand, within CCNA_02733 at 2895.649 kb on + strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.681 kb on - strand, within CCNA_02733 at 2895.688 kb on - strand, within CCNA_02733 at 2895.771 kb on - strand, within CCNA_02733 at 2895.815 kb on + strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.833 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.936 kb on - strand, within CCNA_02733 at 2895.979 kb on - strand, within CCNA_02733 at 2896.016 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.036 kb on - strand, within CCNA_02733 at 2896.063 kb on - strand, within CCNA_02733 at 2896.065 kb on + strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.088 kb on - strand, within CCNA_02733 at 2896.102 kb on + strand, within CCNA_02733 at 2896.117 kb on - strand, within CCNA_02733 at 2896.219 kb on - strand at 2896.232 kb on + strand at 2896.240 kb on - strand at 2896.252 kb on - strand at 2896.262 kb on - strand at 2896.421 kb on + strand, within CCNA_02734 at 2896.488 kb on + strand, within CCNA_02734 at 2896.505 kb on + strand, within CCNA_02734 at 2896.561 kb on - strand, within CCNA_02734 at 2896.607 kb on + strand, within CCNA_02734 at 2896.630 kb on + strand, within CCNA_02734 at 2896.640 kb on + strand, within CCNA_02734 at 2896.688 kb on + strand, within CCNA_02734 at 2896.694 kb on - strand, within CCNA_02734 at 2896.736 kb on + strand, within CCNA_02734 at 2896.739 kb on - strand, within CCNA_02734 at 2896.772 kb on + strand, within CCNA_02734 at 2896.772 kb on + strand, within CCNA_02734 at 2896.780 kb on - strand, within CCNA_02734 at 2896.875 kb on + strand, within CCNA_02734 at 2897.008 kb on - strand at 2897.063 kb on - strand at 2897.127 kb on + strand at 2897.138 kb on + strand at 2897.164 kb on - strand at 2897.178 kb on + strand at 2897.186 kb on - strand at 2897.186 kb on - strand at 2897.190 kb on + strand at 2897.201 kb on - strand, within CCNA_02735 at 2897.201 kb on - strand, within CCNA_02735 at 2897.223 kb on + strand, within CCNA_02735 at 2897.288 kb on - strand, within CCNA_02735 at 2897.292 kb on - strand, within CCNA_02735 at 2897.325 kb on + strand, within CCNA_02735 at 2897.347 kb on - strand, within CCNA_02735 at 2897.442 kb on + strand, within CCNA_02735 at 2897.463 kb on - strand, within CCNA_02735 at 2897.509 kb on + strand, within CCNA_02735 at 2897.517 kb on - strand, within CCNA_02735 at 2897.527 kb on - strand, within CCNA_02735 at 2897.631 kb on + strand, within CCNA_02735 at 2897.639 kb on - strand, within CCNA_02735 at 2897.642 kb on + strand, within CCNA_02735 at 2897.663 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.691 kb on + strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.699 kb on - strand, within CCNA_02735 at 2897.709 kb on + strand, within CCNA_02735 at 2897.710 kb on + strand, within CCNA_02735 at 2897.717 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.718 kb on - strand, within CCNA_02735 at 2897.725 kb on - strand, within CCNA_02735 at 2897.732 kb on - strand, within CCNA_02735 at 2897.744 kb on - strand, within CCNA_02735 at 2897.796 kb on - strand at 2897.824 kb on - strand at 2897.852 kb on + strand at 2897.855 kb on - strand at 2897.857 kb on + strand at 2897.865 kb on - strand at 2897.891 kb on - strand at 2897.896 kb on - strand at 2897.897 kb on + strand at 2897.916 kb on + strand, within CCNA_02736 at 2897.965 kb on - strand, within CCNA_02736 at 2898.052 kb on + strand, within CCNA_02736 at 2898.074 kb on + strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.082 kb on - strand, within CCNA_02736 at 2898.084 kb on - strand, within CCNA_02736
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,895,256 - +0.1 2,895,272 - -0.2 2,895,297 - -0.4 2,895,307 - -0.0 2,895,307 - -0.3 2,895,314 + -1.0 2,895,322 - -0.2 2,895,350 - -0.0 2,895,383 + +0.6 2,895,383 - -0.6 2,895,462 + -0.1 2,895,467 + -2.3 2,895,467 + +0.4 2,895,470 - +1.2 2,895,475 - +0.1 2,895,475 - +0.4 2,895,516 - CCNA_02733 0.11 +0.9 2,895,523 + CCNA_02733 0.12 -0.3 2,895,531 - CCNA_02733 0.13 +0.3 2,895,531 - CCNA_02733 0.13 +0.0 2,895,531 - CCNA_02733 0.13 +1.0 2,895,591 - CCNA_02733 0.21 -0.8 2,895,592 - CCNA_02733 0.21 +0.5 2,895,611 + CCNA_02733 0.23 -0.6 2,895,647 - CCNA_02733 0.28 -0.0 2,895,649 + CCNA_02733 0.28 +1.4 2,895,670 - CCNA_02733 0.31 +0.4 2,895,670 - CCNA_02733 0.31 +0.7 2,895,670 - CCNA_02733 0.31 -2.0 2,895,681 - CCNA_02733 0.32 -0.3 2,895,688 - CCNA_02733 0.33 +0.4 2,895,771 - CCNA_02733 0.44 +0.4 2,895,815 + CCNA_02733 0.49 +1.5 2,895,816 - CCNA_02733 0.49 -0.2 2,895,816 - CCNA_02733 0.49 +0.5 2,895,816 - CCNA_02733 0.49 +0.3 2,895,823 - CCNA_02733 0.50 +0.8 2,895,833 + CCNA_02733 0.51 -0.3 2,895,893 + CCNA_02733 0.59 -0.3 2,895,893 + CCNA_02733 0.59 -0.2 2,895,893 + CCNA_02733 0.59 -0.9 2,895,893 + CCNA_02733 0.59 +0.0 2,895,893 + CCNA_02733 0.59 +0.6 2,895,893 + CCNA_02733 0.59 -1.1 2,895,893 + CCNA_02733 0.59 -0.7 2,895,893 + CCNA_02733 0.59 +0.1 2,895,901 - CCNA_02733 0.60 +0.2 2,895,901 - CCNA_02733 0.60 +1.0 2,895,901 - CCNA_02733 0.60 -0.9 2,895,901 - CCNA_02733 0.60 +1.1 2,895,936 - CCNA_02733 0.65 +0.2 2,895,979 - CCNA_02733 0.70 +0.0 2,896,016 + CCNA_02733 0.75 +0.3 2,896,021 + CCNA_02733 0.75 +0.5 2,896,021 + CCNA_02733 0.75 +3.1 2,896,029 - CCNA_02733 0.77 -0.0 2,896,029 - CCNA_02733 0.77 -0.0 2,896,029 - CCNA_02733 0.77 +0.2 2,896,036 - CCNA_02733 0.77 +0.3 2,896,063 - CCNA_02733 0.81 +1.0 2,896,065 + CCNA_02733 0.81 -1.9 2,896,088 - CCNA_02733 0.84 +0.4 2,896,088 - CCNA_02733 0.84 -0.5 2,896,102 + CCNA_02733 0.86 -1.3 2,896,117 - CCNA_02733 0.88 +0.3 2,896,219 - -0.6 2,896,232 + +0.5 2,896,240 - +0.4 2,896,252 - -1.1 2,896,262 - +0.7 2,896,421 + CCNA_02734 0.24 -0.6 2,896,488 + CCNA_02734 0.32 +2.0 2,896,505 + CCNA_02734 0.33 +0.1 2,896,561 - CCNA_02734 0.40 +0.5 2,896,607 + CCNA_02734 0.45 -1.0 2,896,630 + CCNA_02734 0.48 -2.2 2,896,640 + CCNA_02734 0.49 +0.9 2,896,688 + CCNA_02734 0.54 +0.8 2,896,694 - CCNA_02734 0.55 -0.0 2,896,736 + CCNA_02734 0.60 -0.6 2,896,739 - CCNA_02734 0.60 +0.9 2,896,772 + CCNA_02734 0.64 -1.0 2,896,772 + CCNA_02734 0.64 +0.9 2,896,780 - CCNA_02734 0.65 -1.3 2,896,875 + CCNA_02734 0.76 +0.1 2,897,008 - +0.7 2,897,063 - +0.4 2,897,127 + -0.3 2,897,138 + +0.7 2,897,164 - +0.3 2,897,178 + -0.6 2,897,186 - +0.6 2,897,186 - -0.8 2,897,190 + -0.4 2,897,201 - CCNA_02735 0.10 +0.6 2,897,201 - CCNA_02735 0.10 -0.5 2,897,223 + CCNA_02735 0.13 +0.1 2,897,288 - CCNA_02735 0.22 +1.2 2,897,292 - CCNA_02735 0.23 +0.3 2,897,325 + CCNA_02735 0.27 +1.1 2,897,347 - CCNA_02735 0.30 -1.0 2,897,442 + CCNA_02735 0.44 +0.3 2,897,463 - CCNA_02735 0.47 -0.1 2,897,509 + CCNA_02735 0.53 +0.5 2,897,517 - CCNA_02735 0.54 +0.4 2,897,527 - CCNA_02735 0.56 -0.2 2,897,631 + CCNA_02735 0.70 -0.2 2,897,639 - CCNA_02735 0.71 +1.3 2,897,642 + CCNA_02735 0.72 +1.8 2,897,663 + CCNA_02735 0.74 +0.3 2,897,691 + CCNA_02735 0.78 +0.7 2,897,691 + CCNA_02735 0.78 -0.0 2,897,691 + CCNA_02735 0.78 -0.4 2,897,699 - CCNA_02735 0.79 -0.5 2,897,699 - CCNA_02735 0.79 -0.3 2,897,699 - CCNA_02735 0.79 -0.6 2,897,699 - CCNA_02735 0.79 +0.7 2,897,699 - CCNA_02735 0.79 -0.4 2,897,709 + CCNA_02735 0.81 +0.8 2,897,710 + CCNA_02735 0.81 -0.1 2,897,717 - CCNA_02735 0.82 -1.2 2,897,718 - CCNA_02735 0.82 -0.3 2,897,718 - CCNA_02735 0.82 -1.0 2,897,725 - CCNA_02735 0.83 +0.2 2,897,732 - CCNA_02735 0.84 -0.0 2,897,744 - CCNA_02735 0.86 -0.0 2,897,796 - +0.8 2,897,824 - +0.4 2,897,852 + +0.5 2,897,855 - -1.8 2,897,857 + +1.4 2,897,865 - -0.2 2,897,891 - -0.4 2,897,896 - +1.4 2,897,897 + +2.4 2,897,916 + CCNA_02736 0.11 +0.2 2,897,965 - CCNA_02736 0.19 +1.2 2,898,052 + CCNA_02736 0.33 +0.5 2,898,074 + CCNA_02736 0.36 +0.4 2,898,082 - CCNA_02736 0.38 +0.4 2,898,082 - CCNA_02736 0.38 -0.2 2,898,082 - CCNA_02736 0.38 -1.2 2,898,084 - CCNA_02736 0.38 -0.6
Or see this region's nucleotide sequence