Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02729 and CCNA_02730 are separated by 6 nucleotides CCNA_02730 and CCNA_02731 overlap by 4 nucleotides CCNA_02731 and CCNA_02732 are separated by 115 nucleotides
CCNA_02729: CCNA_02729 - oligopeptide transporter, at 2,891,507 to 2,893,507
_02729
CCNA_02730: CCNA_02730 - glutathione S-transferase, at 2,893,514 to 2,894,161
_02730
CCNA_02731: CCNA_02731 - acetyltransferase, at 2,894,158 to 2,894,847
_02731
CCNA_02732: CCNA_02732 - hypothetical protein, at 2,894,963 to 2,895,169
_02732
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2892.652 kb on + strand, within CCNA_02729 at 2892.669 kb on - strand, within CCNA_02729 at 2892.680 kb on - strand, within CCNA_02729 at 2892.682 kb on - strand, within CCNA_02729 at 2892.720 kb on + strand, within CCNA_02729 at 2892.740 kb on + strand, within CCNA_02729 at 2892.743 kb on - strand, within CCNA_02729 at 2892.743 kb on - strand, within CCNA_02729 at 2892.770 kb on - strand, within CCNA_02729 at 2892.814 kb on + strand, within CCNA_02729 at 2892.829 kb on + strand, within CCNA_02729 at 2892.829 kb on + strand, within CCNA_02729 at 2892.829 kb on + strand, within CCNA_02729 at 2892.845 kb on - strand, within CCNA_02729 at 2892.847 kb on + strand, within CCNA_02729 at 2892.848 kb on + strand, within CCNA_02729 at 2892.932 kb on + strand, within CCNA_02729 at 2892.940 kb on - strand, within CCNA_02729 at 2893.012 kb on - strand, within CCNA_02729 at 2893.012 kb on - strand, within CCNA_02729 at 2893.014 kb on + strand, within CCNA_02729 at 2893.022 kb on - strand, within CCNA_02729 at 2893.026 kb on - strand, within CCNA_02729 at 2893.026 kb on - strand, within CCNA_02729 at 2893.030 kb on + strand, within CCNA_02729 at 2893.030 kb on + strand, within CCNA_02729 at 2893.038 kb on - strand, within CCNA_02729 at 2893.038 kb on - strand, within CCNA_02729 at 2893.038 kb on - strand, within CCNA_02729 at 2893.052 kb on + strand, within CCNA_02729 at 2893.072 kb on + strand, within CCNA_02729 at 2893.080 kb on + strand, within CCNA_02729 at 2893.092 kb on + strand, within CCNA_02729 at 2893.092 kb on + strand, within CCNA_02729 at 2893.097 kb on + strand, within CCNA_02729 at 2893.100 kb on - strand, within CCNA_02729 at 2893.100 kb on - strand, within CCNA_02729 at 2893.100 kb on - strand, within CCNA_02729 at 2893.105 kb on - strand, within CCNA_02729 at 2893.115 kb on - strand, within CCNA_02729 at 2893.123 kb on + strand, within CCNA_02729 at 2893.126 kb on - strand, within CCNA_02729 at 2893.150 kb on - strand, within CCNA_02729 at 2893.152 kb on - strand, within CCNA_02729 at 2893.164 kb on + strand, within CCNA_02729 at 2893.194 kb on - strand, within CCNA_02729 at 2893.221 kb on - strand, within CCNA_02729 at 2893.349 kb on - strand at 2893.393 kb on - strand at 2893.419 kb on - strand at 2893.453 kb on + strand at 2893.523 kb on - strand at 2893.692 kb on + strand, within CCNA_02730 at 2893.692 kb on + strand, within CCNA_02730 at 2893.700 kb on - strand, within CCNA_02730 at 2893.728 kb on + strand, within CCNA_02730 at 2893.736 kb on - strand, within CCNA_02730 at 2893.736 kb on - strand, within CCNA_02730 at 2893.749 kb on + strand, within CCNA_02730 at 2893.749 kb on + strand, within CCNA_02730 at 2893.757 kb on - strand, within CCNA_02730 at 2893.795 kb on + strand, within CCNA_02730 at 2893.818 kb on + strand, within CCNA_02730 at 2893.818 kb on - strand, within CCNA_02730 at 2893.857 kb on - strand, within CCNA_02730 at 2893.944 kb on + strand, within CCNA_02730 at 2893.944 kb on + strand, within CCNA_02730 at 2893.948 kb on + strand, within CCNA_02730 at 2894.012 kb on + strand, within CCNA_02730 at 2894.034 kb on - strand, within CCNA_02730 at 2894.058 kb on - strand, within CCNA_02730 at 2894.079 kb on - strand, within CCNA_02730 at 2894.085 kb on - strand, within CCNA_02730 at 2894.122 kb on - strand at 2894.152 kb on + strand at 2894.155 kb on + strand at 2894.163 kb on - strand at 2894.188 kb on + strand at 2894.210 kb on - strand at 2894.258 kb on - strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.332 kb on - strand, within CCNA_02731 at 2894.351 kb on - strand, within CCNA_02731 at 2894.363 kb on + strand, within CCNA_02731 at 2894.373 kb on + strand, within CCNA_02731 at 2894.375 kb on + strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.408 kb on + strand, within CCNA_02731 at 2894.430 kb on + strand, within CCNA_02731 at 2894.448 kb on - strand, within CCNA_02731 at 2894.462 kb on - strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.544 kb on - strand, within CCNA_02731 at 2894.572 kb on + strand, within CCNA_02731 at 2894.603 kb on + strand, within CCNA_02731 at 2894.616 kb on + strand, within CCNA_02731 at 2894.666 kb on + strand, within CCNA_02731 at 2894.688 kb on - strand, within CCNA_02731 at 2894.717 kb on + strand, within CCNA_02731 at 2894.730 kb on - strand, within CCNA_02731 at 2894.730 kb on - strand, within CCNA_02731 at 2894.737 kb on - strand, within CCNA_02731 at 2894.755 kb on + strand, within CCNA_02731 at 2894.763 kb on - strand, within CCNA_02731 at 2894.808 kb on + strand at 2894.821 kb on - strand at 2894.835 kb on + strand at 2894.835 kb on + strand at 2894.851 kb on - strand at 2894.863 kb on + strand at 2894.887 kb on + strand at 2894.908 kb on + strand at 2894.910 kb on - strand at 2894.960 kb on + strand at 2894.965 kb on + strand at 2894.974 kb on - strand at 2895.012 kb on + strand, within CCNA_02732 at 2895.024 kb on + strand, within CCNA_02732 at 2895.107 kb on - strand, within CCNA_02732 at 2895.116 kb on + strand, within CCNA_02732
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,892,652 + CCNA_02729 0.57 +0.3 2,892,669 - CCNA_02729 0.58 -0.7 2,892,680 - CCNA_02729 0.59 +0.0 2,892,682 - CCNA_02729 0.59 +0.2 2,892,720 + CCNA_02729 0.61 +0.9 2,892,740 + CCNA_02729 0.62 -0.2 2,892,743 - CCNA_02729 0.62 +0.2 2,892,743 - CCNA_02729 0.62 -0.3 2,892,770 - CCNA_02729 0.63 +2.8 2,892,814 + CCNA_02729 0.65 +0.2 2,892,829 + CCNA_02729 0.66 +0.2 2,892,829 + CCNA_02729 0.66 +0.2 2,892,829 + CCNA_02729 0.66 +0.2 2,892,845 - CCNA_02729 0.67 +1.6 2,892,847 + CCNA_02729 0.67 +0.3 2,892,848 + CCNA_02729 0.67 -0.1 2,892,932 + CCNA_02729 0.71 +0.2 2,892,940 - CCNA_02729 0.72 -0.7 2,893,012 - CCNA_02729 0.75 -1.9 2,893,012 - CCNA_02729 0.75 +0.4 2,893,014 + CCNA_02729 0.75 +1.3 2,893,022 - CCNA_02729 0.76 +0.0 2,893,026 - CCNA_02729 0.76 +1.2 2,893,026 - CCNA_02729 0.76 -2.2 2,893,030 + CCNA_02729 0.76 +0.6 2,893,030 + CCNA_02729 0.76 +0.9 2,893,038 - CCNA_02729 0.77 -0.1 2,893,038 - CCNA_02729 0.77 -0.8 2,893,038 - CCNA_02729 0.77 -0.0 2,893,052 + CCNA_02729 0.77 -0.1 2,893,072 + CCNA_02729 0.78 -0.4 2,893,080 + CCNA_02729 0.79 +0.5 2,893,092 + CCNA_02729 0.79 +0.7 2,893,092 + CCNA_02729 0.79 +0.8 2,893,097 + CCNA_02729 0.79 +0.3 2,893,100 - CCNA_02729 0.80 -0.2 2,893,100 - CCNA_02729 0.80 +1.2 2,893,100 - CCNA_02729 0.80 -0.9 2,893,105 - CCNA_02729 0.80 -0.2 2,893,115 - CCNA_02729 0.80 +0.6 2,893,123 + CCNA_02729 0.81 +0.0 2,893,126 - CCNA_02729 0.81 +0.7 2,893,150 - CCNA_02729 0.82 +0.2 2,893,152 - CCNA_02729 0.82 +0.9 2,893,164 + CCNA_02729 0.83 +0.1 2,893,194 - CCNA_02729 0.84 +0.2 2,893,221 - CCNA_02729 0.86 -1.0 2,893,349 - +0.4 2,893,393 - +0.6 2,893,419 - -1.0 2,893,453 + +0.6 2,893,523 - -1.5 2,893,692 + CCNA_02730 0.27 +2.6 2,893,692 + CCNA_02730 0.27 +0.4 2,893,700 - CCNA_02730 0.29 +1.1 2,893,728 + CCNA_02730 0.33 +0.2 2,893,736 - CCNA_02730 0.34 +0.4 2,893,736 - CCNA_02730 0.34 -1.1 2,893,749 + CCNA_02730 0.36 +0.9 2,893,749 + CCNA_02730 0.36 +0.7 2,893,757 - CCNA_02730 0.38 +0.9 2,893,795 + CCNA_02730 0.43 +1.1 2,893,818 + CCNA_02730 0.47 -0.1 2,893,818 - CCNA_02730 0.47 +0.9 2,893,857 - CCNA_02730 0.53 +1.9 2,893,944 + CCNA_02730 0.66 -0.0 2,893,944 + CCNA_02730 0.66 +0.6 2,893,948 + CCNA_02730 0.67 -0.2 2,894,012 + CCNA_02730 0.77 -0.8 2,894,034 - CCNA_02730 0.80 -0.0 2,894,058 - CCNA_02730 0.84 -0.0 2,894,079 - CCNA_02730 0.87 +0.2 2,894,085 - CCNA_02730 0.88 +0.6 2,894,122 - +0.6 2,894,152 + +0.2 2,894,155 + +0.3 2,894,163 - +0.6 2,894,188 + -0.6 2,894,210 - -0.5 2,894,258 - CCNA_02731 0.14 +0.3 2,894,324 + CCNA_02731 0.24 +0.2 2,894,324 + CCNA_02731 0.24 +1.1 2,894,324 + CCNA_02731 0.24 +1.1 2,894,324 + CCNA_02731 0.24 +1.0 2,894,332 - CCNA_02731 0.25 +0.1 2,894,351 - CCNA_02731 0.28 +0.2 2,894,363 + CCNA_02731 0.30 +0.3 2,894,373 + CCNA_02731 0.31 +1.0 2,894,375 + CCNA_02731 0.31 +0.7 2,894,381 - CCNA_02731 0.32 -0.5 2,894,381 - CCNA_02731 0.32 +0.8 2,894,381 - CCNA_02731 0.32 -0.6 2,894,381 - CCNA_02731 0.32 -0.3 2,894,383 - CCNA_02731 0.33 +0.8 2,894,383 - CCNA_02731 0.33 -0.0 2,894,408 + CCNA_02731 0.36 -0.1 2,894,430 + CCNA_02731 0.39 +0.6 2,894,448 - CCNA_02731 0.42 -1.2 2,894,462 - CCNA_02731 0.44 -0.0 2,894,491 - CCNA_02731 0.48 -1.1 2,894,491 - CCNA_02731 0.48 +0.4 2,894,544 - CCNA_02731 0.56 -0.3 2,894,572 + CCNA_02731 0.60 -0.6 2,894,603 + CCNA_02731 0.64 -0.0 2,894,616 + CCNA_02731 0.66 -0.8 2,894,666 + CCNA_02731 0.74 +0.2 2,894,688 - CCNA_02731 0.77 +0.1 2,894,717 + CCNA_02731 0.81 +0.0 2,894,730 - CCNA_02731 0.83 +1.1 2,894,730 - CCNA_02731 0.83 -1.2 2,894,737 - CCNA_02731 0.84 +0.3 2,894,755 + CCNA_02731 0.87 -0.3 2,894,763 - CCNA_02731 0.88 -0.5 2,894,808 + +0.8 2,894,821 - -0.0 2,894,835 + -0.5 2,894,835 + +0.3 2,894,851 - +0.2 2,894,863 + +0.3 2,894,887 + -0.9 2,894,908 + -0.4 2,894,910 - +0.1 2,894,960 + +0.9 2,894,965 + +0.6 2,894,974 - +0.4 2,895,012 + CCNA_02732 0.24 +0.0 2,895,024 + CCNA_02732 0.29 +0.7 2,895,107 - CCNA_02732 0.70 +0.2 2,895,116 + CCNA_02732 0.74 -0.1
Or see this region's nucleotide sequence