Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02696 and CCNA_02697 overlap by 4 nucleotides CCNA_02697 and CCNA_02698 are separated by 9 nucleotides
CCNA_02696: CCNA_02696 - AtzE family amidohydrolase, at 2,849,672 to 2,851,066
_02696
CCNA_02697: CCNA_02697 - hypothetical protein, at 2,851,063 to 2,851,479
_02697
CCNA_02698: CCNA_02698 - Inosine-uridine nucleoside N-ribohydrolase, at 2,851,489 to 2,852,460
_02698
Position (kb)
2851
2852 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2850.087 kb on - strand, within CCNA_02696 at 2850.087 kb on - strand, within CCNA_02696 at 2850.094 kb on - strand, within CCNA_02696 at 2850.179 kb on - strand, within CCNA_02696 at 2850.226 kb on - strand, within CCNA_02696 at 2850.231 kb on - strand, within CCNA_02696 at 2850.237 kb on + strand, within CCNA_02696 at 2850.249 kb on + strand, within CCNA_02696 at 2850.282 kb on - strand, within CCNA_02696 at 2850.294 kb on + strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.371 kb on - strand, within CCNA_02696 at 2850.442 kb on + strand, within CCNA_02696 at 2850.506 kb on + strand, within CCNA_02696 at 2850.541 kb on + strand, within CCNA_02696 at 2850.546 kb on + strand, within CCNA_02696 at 2850.609 kb on - strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.637 kb on - strand, within CCNA_02696 at 2850.644 kb on + strand, within CCNA_02696 at 2850.672 kb on + strand, within CCNA_02696 at 2850.697 kb on - strand, within CCNA_02696 at 2850.709 kb on + strand, within CCNA_02696 at 2850.737 kb on + strand, within CCNA_02696 at 2850.779 kb on + strand, within CCNA_02696 at 2850.782 kb on - strand, within CCNA_02696 at 2850.788 kb on + strand, within CCNA_02696 at 2850.836 kb on + strand, within CCNA_02696 at 2850.870 kb on + strand, within CCNA_02696 at 2850.871 kb on + strand, within CCNA_02696 at 2850.926 kb on + strand, within CCNA_02696 at 2850.934 kb on - strand at 2850.934 kb on - strand at 2850.936 kb on + strand at 2850.944 kb on - strand at 2850.944 kb on - strand at 2850.944 kb on - strand at 2850.984 kb on - strand at 2850.989 kb on + strand at 2850.997 kb on - strand at 2850.997 kb on - strand at 2850.997 kb on - strand at 2851.150 kb on + strand, within CCNA_02697 at 2851.152 kb on + strand, within CCNA_02697 at 2851.160 kb on - strand, within CCNA_02697 at 2851.164 kb on + strand, within CCNA_02697 at 2851.172 kb on - strand, within CCNA_02697 at 2851.172 kb on - strand, within CCNA_02697 at 2851.192 kb on - strand, within CCNA_02697 at 2851.225 kb on - strand, within CCNA_02697 at 2851.327 kb on + strand, within CCNA_02697 at 2851.397 kb on + strand, within CCNA_02697 at 2851.414 kb on + strand, within CCNA_02697 at 2851.419 kb on + strand, within CCNA_02697 at 2851.429 kb on + strand, within CCNA_02697 at 2851.563 kb on + strand at 2851.578 kb on + strand at 2851.600 kb on + strand, within CCNA_02698 at 2851.644 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.678 kb on + strand, within CCNA_02698 at 2851.719 kb on + strand, within CCNA_02698 at 2851.738 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.758 kb on - strand, within CCNA_02698 at 2851.760 kb on + strand, within CCNA_02698 at 2851.763 kb on - strand, within CCNA_02698 at 2851.774 kb on + strand, within CCNA_02698 at 2851.823 kb on - strand, within CCNA_02698 at 2851.845 kb on + strand, within CCNA_02698 at 2851.850 kb on + strand, within CCNA_02698 at 2851.857 kb on + strand, within CCNA_02698 at 2851.868 kb on - strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.873 kb on + strand, within CCNA_02698 at 2851.877 kb on + strand, within CCNA_02698 at 2851.881 kb on - strand, within CCNA_02698 at 2851.896 kb on - strand, within CCNA_02698 at 2851.904 kb on - strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.926 kb on + strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.934 kb on - strand, within CCNA_02698 at 2851.983 kb on + strand, within CCNA_02698 at 2851.985 kb on - strand, within CCNA_02698 at 2852.016 kb on - strand, within CCNA_02698 at 2852.027 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.037 kb on + strand, within CCNA_02698 at 2852.045 kb on - strand, within CCNA_02698 at 2852.051 kb on + strand, within CCNA_02698 at 2852.059 kb on - strand, within CCNA_02698 at 2852.072 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.166 kb on + strand, within CCNA_02698 at 2852.192 kb on - strand, within CCNA_02698 at 2852.211 kb on + strand, within CCNA_02698 at 2852.320 kb on - strand, within CCNA_02698 at 2852.324 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.342 kb on - strand, within CCNA_02698 at 2852.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,850,087 - CCNA_02696 0.30 -0.3 2,850,087 - CCNA_02696 0.30 -0.2 2,850,094 - CCNA_02696 0.30 -2.1 2,850,179 - CCNA_02696 0.36 -1.0 2,850,226 - CCNA_02696 0.40 -0.5 2,850,231 - CCNA_02696 0.40 -1.0 2,850,237 + CCNA_02696 0.41 -0.1 2,850,249 + CCNA_02696 0.41 +0.7 2,850,282 - CCNA_02696 0.44 +0.6 2,850,294 + CCNA_02696 0.45 +1.9 2,850,351 - CCNA_02696 0.49 +1.1 2,850,351 - CCNA_02696 0.49 -0.1 2,850,351 - CCNA_02696 0.49 -0.6 2,850,363 + CCNA_02696 0.50 +1.4 2,850,363 + CCNA_02696 0.50 +0.6 2,850,371 - CCNA_02696 0.50 -0.4 2,850,442 + CCNA_02696 0.55 +0.2 2,850,506 + CCNA_02696 0.60 -0.2 2,850,541 + CCNA_02696 0.62 +0.6 2,850,546 + CCNA_02696 0.63 +0.4 2,850,609 - CCNA_02696 0.67 -0.3 2,850,629 + CCNA_02696 0.69 +0.4 2,850,629 + CCNA_02696 0.69 -0.0 2,850,637 - CCNA_02696 0.69 +0.6 2,850,644 + CCNA_02696 0.70 -0.2 2,850,672 + CCNA_02696 0.72 +0.6 2,850,697 - CCNA_02696 0.73 +0.0 2,850,709 + CCNA_02696 0.74 -0.0 2,850,737 + CCNA_02696 0.76 -0.2 2,850,779 + CCNA_02696 0.79 -0.1 2,850,782 - CCNA_02696 0.80 -1.0 2,850,788 + CCNA_02696 0.80 +0.3 2,850,836 + CCNA_02696 0.83 -0.4 2,850,870 + CCNA_02696 0.86 +0.5 2,850,871 + CCNA_02696 0.86 -0.4 2,850,926 + CCNA_02696 0.90 +0.3 2,850,934 - -0.6 2,850,934 - +0.0 2,850,936 + +0.6 2,850,944 - -0.9 2,850,944 - -0.1 2,850,944 - +2.7 2,850,984 - +0.4 2,850,989 + +0.6 2,850,997 - +1.2 2,850,997 - -0.4 2,850,997 - +0.9 2,851,150 + CCNA_02697 0.21 +0.7 2,851,152 + CCNA_02697 0.21 +1.2 2,851,160 - CCNA_02697 0.23 -1.5 2,851,164 + CCNA_02697 0.24 +0.3 2,851,172 - CCNA_02697 0.26 +0.8 2,851,172 - CCNA_02697 0.26 -0.4 2,851,192 - CCNA_02697 0.31 +0.3 2,851,225 - CCNA_02697 0.39 -1.8 2,851,327 + CCNA_02697 0.63 +0.5 2,851,397 + CCNA_02697 0.80 +0.1 2,851,414 + CCNA_02697 0.84 -0.1 2,851,419 + CCNA_02697 0.85 +0.7 2,851,429 + CCNA_02697 0.88 +0.2 2,851,563 + +0.0 2,851,578 + -1.1 2,851,600 + CCNA_02698 0.11 +0.9 2,851,644 + CCNA_02698 0.16 -0.3 2,851,678 + CCNA_02698 0.19 -0.1 2,851,678 + CCNA_02698 0.19 +1.8 2,851,678 + CCNA_02698 0.19 +1.9 2,851,719 + CCNA_02698 0.24 +0.7 2,851,738 - CCNA_02698 0.26 -1.1 2,851,758 - CCNA_02698 0.28 +0.2 2,851,758 - CCNA_02698 0.28 -1.6 2,851,760 + CCNA_02698 0.28 +0.2 2,851,763 - CCNA_02698 0.28 +0.4 2,851,774 + CCNA_02698 0.29 +1.2 2,851,823 - CCNA_02698 0.34 +0.2 2,851,845 + CCNA_02698 0.37 +0.7 2,851,850 + CCNA_02698 0.37 -0.2 2,851,857 + CCNA_02698 0.38 +0.9 2,851,868 - CCNA_02698 0.39 -1.1 2,851,873 + CCNA_02698 0.40 +0.4 2,851,873 + CCNA_02698 0.40 +0.6 2,851,877 + CCNA_02698 0.40 -0.6 2,851,881 - CCNA_02698 0.40 -0.5 2,851,896 - CCNA_02698 0.42 -1.0 2,851,904 - CCNA_02698 0.43 -1.6 2,851,926 + CCNA_02698 0.45 +0.4 2,851,926 + CCNA_02698 0.45 +1.2 2,851,934 - CCNA_02698 0.46 -0.3 2,851,934 - CCNA_02698 0.46 +0.2 2,851,983 + CCNA_02698 0.51 +0.7 2,851,985 - CCNA_02698 0.51 +0.6 2,852,016 - CCNA_02698 0.54 -0.2 2,852,027 + CCNA_02698 0.55 +0.1 2,852,037 + CCNA_02698 0.56 +0.3 2,852,037 + CCNA_02698 0.56 +0.6 2,852,037 + CCNA_02698 0.56 +0.4 2,852,045 - CCNA_02698 0.57 +0.9 2,852,051 + CCNA_02698 0.58 +0.1 2,852,059 - CCNA_02698 0.59 -1.6 2,852,072 + CCNA_02698 0.60 +0.2 2,852,166 + CCNA_02698 0.70 -0.2 2,852,166 + CCNA_02698 0.70 +0.2 2,852,192 - CCNA_02698 0.72 -1.2 2,852,211 + CCNA_02698 0.74 +0.6 2,852,320 - CCNA_02698 0.85 -0.1 2,852,324 - CCNA_02698 0.86 -0.4 2,852,342 - CCNA_02698 0.88 -2.9 2,852,342 - CCNA_02698 0.88 -1.1 2,852,439 - +0.2
Or see this region's nucleotide sequence