Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02694 and CCNA_02695 are separated by 218 nucleotides CCNA_02695 and CCNA_02696 overlap by 4 nucleotides
CCNA_02694: CCNA_02694 - acetamidase/formamidase family protein, at 2,848,273 to 2,849,238
_02694
CCNA_02695: CCNA_02695 - hypothetical protein, at 2,849,457 to 2,849,675
_02695
CCNA_02696: CCNA_02696 - AtzE family amidohydrolase, at 2,849,672 to 2,851,066
_02696
Position (kb)
2849
2850 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2848.468 kb on + strand, within CCNA_02694 at 2848.468 kb on + strand, within CCNA_02694 at 2848.468 kb on + strand, within CCNA_02694 at 2848.468 kb on + strand, within CCNA_02694 at 2848.476 kb on - strand, within CCNA_02694 at 2848.539 kb on - strand, within CCNA_02694 at 2848.551 kb on + strand, within CCNA_02694 at 2848.558 kb on + strand, within CCNA_02694 at 2848.566 kb on - strand, within CCNA_02694 at 2848.570 kb on + strand, within CCNA_02694 at 2848.583 kb on - strand, within CCNA_02694 at 2848.675 kb on - strand, within CCNA_02694 at 2848.695 kb on + strand, within CCNA_02694 at 2848.695 kb on + strand, within CCNA_02694 at 2848.703 kb on - strand, within CCNA_02694 at 2848.703 kb on - strand, within CCNA_02694 at 2848.789 kb on - strand, within CCNA_02694 at 2848.818 kb on + strand, within CCNA_02694 at 2848.821 kb on - strand, within CCNA_02694 at 2848.826 kb on - strand, within CCNA_02694 at 2848.877 kb on + strand, within CCNA_02694 at 2848.890 kb on - strand, within CCNA_02694 at 2848.891 kb on - strand, within CCNA_02694 at 2848.891 kb on - strand, within CCNA_02694 at 2848.895 kb on + strand, within CCNA_02694 at 2848.933 kb on - strand, within CCNA_02694 at 2848.940 kb on + strand, within CCNA_02694 at 2848.949 kb on + strand, within CCNA_02694 at 2848.962 kb on + strand, within CCNA_02694 at 2848.962 kb on + strand, within CCNA_02694 at 2848.988 kb on - strand, within CCNA_02694 at 2849.021 kb on + strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.030 kb on - strand, within CCNA_02694 at 2849.044 kb on + strand, within CCNA_02694 at 2849.052 kb on - strand, within CCNA_02694 at 2849.071 kb on - strand, within CCNA_02694 at 2849.178 kb on + strand at 2849.200 kb on + strand at 2849.209 kb on - strand at 2849.209 kb on - strand at 2849.260 kb on + strand at 2849.260 kb on + strand at 2849.268 kb on - strand at 2849.268 kb on - strand at 2849.268 kb on - strand at 2849.284 kb on + strand at 2849.284 kb on + strand at 2849.292 kb on - strand at 2849.340 kb on + strand at 2849.372 kb on - strand at 2849.372 kb on - strand at 2849.372 kb on - strand at 2849.383 kb on + strand at 2849.383 kb on + strand at 2849.396 kb on + strand at 2849.449 kb on - strand at 2849.545 kb on + strand, within CCNA_02695 at 2849.545 kb on + strand, within CCNA_02695 at 2849.545 kb on + strand, within CCNA_02695 at 2849.553 kb on - strand, within CCNA_02695 at 2849.568 kb on - strand, within CCNA_02695 at 2849.587 kb on + strand, within CCNA_02695 at 2849.595 kb on + strand, within CCNA_02695 at 2849.595 kb on + strand, within CCNA_02695 at 2849.597 kb on + strand, within CCNA_02695 at 2849.626 kb on - strand, within CCNA_02695 at 2849.671 kb on - strand at 2849.695 kb on - strand at 2849.707 kb on + strand at 2849.725 kb on - strand at 2849.873 kb on + strand, within CCNA_02696 at 2849.902 kb on + strand, within CCNA_02696 at 2849.921 kb on + strand, within CCNA_02696 at 2849.925 kb on + strand, within CCNA_02696 at 2849.987 kb on - strand, within CCNA_02696 at 2850.012 kb on + strand, within CCNA_02696 at 2850.017 kb on + strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.025 kb on - strand, within CCNA_02696 at 2850.042 kb on - strand, within CCNA_02696 at 2850.042 kb on - strand, within CCNA_02696 at 2850.087 kb on - strand, within CCNA_02696 at 2850.087 kb on - strand, within CCNA_02696 at 2850.094 kb on - strand, within CCNA_02696 at 2850.179 kb on - strand, within CCNA_02696 at 2850.226 kb on - strand, within CCNA_02696 at 2850.231 kb on - strand, within CCNA_02696 at 2850.237 kb on + strand, within CCNA_02696 at 2850.249 kb on + strand, within CCNA_02696 at 2850.282 kb on - strand, within CCNA_02696 at 2850.294 kb on + strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.351 kb on - strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.363 kb on + strand, within CCNA_02696 at 2850.371 kb on - strand, within CCNA_02696 at 2850.442 kb on + strand, within CCNA_02696 at 2850.506 kb on + strand, within CCNA_02696 at 2850.541 kb on + strand, within CCNA_02696 at 2850.546 kb on + strand, within CCNA_02696 at 2850.609 kb on - strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.629 kb on + strand, within CCNA_02696 at 2850.637 kb on - strand, within CCNA_02696 at 2850.644 kb on + strand, within CCNA_02696 at 2850.672 kb on + strand, within CCNA_02696
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,848,468 + CCNA_02694 0.20 -2.7 2,848,468 + CCNA_02694 0.20 -2.0 2,848,468 + CCNA_02694 0.20 -0.5 2,848,468 + CCNA_02694 0.20 -0.2 2,848,476 - CCNA_02694 0.21 -0.8 2,848,539 - CCNA_02694 0.28 +1.8 2,848,551 + CCNA_02694 0.29 +0.1 2,848,558 + CCNA_02694 0.30 -0.1 2,848,566 - CCNA_02694 0.30 -2.0 2,848,570 + CCNA_02694 0.31 -0.7 2,848,583 - CCNA_02694 0.32 -1.6 2,848,675 - CCNA_02694 0.42 +1.4 2,848,695 + CCNA_02694 0.44 +0.5 2,848,695 + CCNA_02694 0.44 +1.4 2,848,703 - CCNA_02694 0.45 +1.6 2,848,703 - CCNA_02694 0.45 -0.1 2,848,789 - CCNA_02694 0.53 -1.5 2,848,818 + CCNA_02694 0.56 +0.9 2,848,821 - CCNA_02694 0.57 +1.8 2,848,826 - CCNA_02694 0.57 -0.3 2,848,877 + CCNA_02694 0.63 -0.6 2,848,890 - CCNA_02694 0.64 +0.4 2,848,891 - CCNA_02694 0.64 +0.6 2,848,891 - CCNA_02694 0.64 -0.0 2,848,895 + CCNA_02694 0.64 +0.3 2,848,933 - CCNA_02694 0.68 -0.4 2,848,940 + CCNA_02694 0.69 +0.1 2,848,949 + CCNA_02694 0.70 -1.9 2,848,962 + CCNA_02694 0.71 +0.1 2,848,962 + CCNA_02694 0.71 -1.4 2,848,988 - CCNA_02694 0.74 -0.6 2,849,021 + CCNA_02694 0.77 +0.1 2,849,030 - CCNA_02694 0.78 +0.6 2,849,030 - CCNA_02694 0.78 +0.6 2,849,030 - CCNA_02694 0.78 -0.5 2,849,044 + CCNA_02694 0.80 +0.5 2,849,052 - CCNA_02694 0.81 -0.7 2,849,071 - CCNA_02694 0.83 -1.6 2,849,178 + +0.4 2,849,200 + +0.2 2,849,209 - +2.3 2,849,209 - +0.2 2,849,260 + +1.9 2,849,260 + +1.4 2,849,268 - -1.6 2,849,268 - +0.0 2,849,268 - +0.9 2,849,284 + +0.3 2,849,284 + +0.0 2,849,292 - +0.2 2,849,340 + -1.0 2,849,372 - +0.1 2,849,372 - +1.9 2,849,372 - -0.5 2,849,383 + +0.8 2,849,383 + -0.4 2,849,396 + -0.4 2,849,449 - -0.6 2,849,545 + CCNA_02695 0.40 +1.7 2,849,545 + CCNA_02695 0.40 +2.0 2,849,545 + CCNA_02695 0.40 -0.2 2,849,553 - CCNA_02695 0.44 +0.3 2,849,568 - CCNA_02695 0.51 -0.8 2,849,587 + CCNA_02695 0.59 +1.0 2,849,595 + CCNA_02695 0.63 +0.2 2,849,595 + CCNA_02695 0.63 +0.4 2,849,597 + CCNA_02695 0.64 +1.4 2,849,626 - CCNA_02695 0.77 -1.0 2,849,671 - -1.0 2,849,695 - +0.0 2,849,707 + -0.4 2,849,725 - +0.6 2,849,873 + CCNA_02696 0.14 +0.4 2,849,902 + CCNA_02696 0.16 +0.7 2,849,921 + CCNA_02696 0.18 +0.1 2,849,925 + CCNA_02696 0.18 -0.2 2,849,987 - CCNA_02696 0.23 +0.5 2,850,012 + CCNA_02696 0.24 +0.4 2,850,017 + CCNA_02696 0.25 +0.7 2,850,025 - CCNA_02696 0.25 +0.2 2,850,025 - CCNA_02696 0.25 +0.3 2,850,025 - CCNA_02696 0.25 +0.7 2,850,042 - CCNA_02696 0.27 +1.2 2,850,042 - CCNA_02696 0.27 -0.1 2,850,087 - CCNA_02696 0.30 -0.3 2,850,087 - CCNA_02696 0.30 -0.2 2,850,094 - CCNA_02696 0.30 -2.1 2,850,179 - CCNA_02696 0.36 -1.0 2,850,226 - CCNA_02696 0.40 -0.5 2,850,231 - CCNA_02696 0.40 -1.0 2,850,237 + CCNA_02696 0.41 -0.1 2,850,249 + CCNA_02696 0.41 +0.7 2,850,282 - CCNA_02696 0.44 +0.6 2,850,294 + CCNA_02696 0.45 +1.9 2,850,351 - CCNA_02696 0.49 +1.1 2,850,351 - CCNA_02696 0.49 -0.1 2,850,351 - CCNA_02696 0.49 -0.6 2,850,363 + CCNA_02696 0.50 +1.4 2,850,363 + CCNA_02696 0.50 +0.6 2,850,371 - CCNA_02696 0.50 -0.4 2,850,442 + CCNA_02696 0.55 +0.2 2,850,506 + CCNA_02696 0.60 -0.2 2,850,541 + CCNA_02696 0.62 +0.6 2,850,546 + CCNA_02696 0.63 +0.4 2,850,609 - CCNA_02696 0.67 -0.3 2,850,629 + CCNA_02696 0.69 +0.4 2,850,629 + CCNA_02696 0.69 -0.0 2,850,637 - CCNA_02696 0.69 +0.6 2,850,644 + CCNA_02696 0.70 -0.2 2,850,672 + CCNA_02696 0.72 +0.6
Or see this region's nucleotide sequence