Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02619

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02617 and CCNA_02618 are separated by 119 nucleotidesCCNA_02618 and CCNA_02619 are separated by 135 nucleotidesCCNA_02619 and CCNA_02620 are separated by 78 nucleotidesCCNA_02620 and CCNA_02621 are separated by 125 nucleotides CCNA_02617: CCNA_02617 - histidinol-phosphate aminotransferase, at 2,765,344 to 2,766,480 _02617 CCNA_02618: CCNA_02618 - AsnC-family transcriptional regulator, at 2,766,600 to 2,767,070 _02618 CCNA_02619: CCNA_02619 - stomatin/prohibitin-related protein, at 2,767,206 to 2,768,111 _02619 CCNA_02620: CCNA_02620 - hypothetical protein, at 2,768,190 to 2,768,480 _02620 CCNA_02621: CCNA_02621 - CAAX amino terminal protease family, at 2,768,606 to 2,769,535 _02621 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1 2at 2766.225 kb on - strand, within CCNA_02617at 2766.227 kb on - strand, within CCNA_02617at 2766.229 kb on + strand, within CCNA_02617at 2766.234 kb on + strand, within CCNA_02617at 2766.239 kb on + strand, within CCNA_02617at 2766.239 kb on + strand, within CCNA_02617at 2766.239 kb on + strand, within CCNA_02617at 2766.239 kb on + strand, within CCNA_02617at 2766.239 kb on + strand, within CCNA_02617at 2766.293 kb on - strand, within CCNA_02617at 2766.306 kb on - strand, within CCNA_02617at 2766.337 kb on + strand, within CCNA_02617at 2766.337 kb on + strand, within CCNA_02617at 2766.345 kb on - strand, within CCNA_02617at 2766.345 kb on - strand, within CCNA_02617at 2766.359 kb on + strand, within CCNA_02617at 2766.367 kb on - strandat 2766.369 kb on + strandat 2766.378 kb on - strandat 2766.396 kb on - strandat 2766.396 kb on - strandat 2766.436 kb on + strandat 2766.479 kb on + strandat 2766.600 kb on - strandat 2766.685 kb on + strand, within CCNA_02618at 2766.685 kb on + strand, within CCNA_02618at 2766.722 kb on + strand, within CCNA_02618at 2766.730 kb on - strand, within CCNA_02618at 2766.732 kb on + strand, within CCNA_02618at 2766.737 kb on + strand, within CCNA_02618at 2766.737 kb on + strand, within CCNA_02618at 2766.757 kb on - strand, within CCNA_02618at 2766.791 kb on + strand, within CCNA_02618at 2766.791 kb on + strand, within CCNA_02618at 2766.791 kb on + strand, within CCNA_02618at 2766.799 kb on - strand, within CCNA_02618at 2766.853 kb on + strand, within CCNA_02618at 2766.873 kb on - strand, within CCNA_02618at 2766.873 kb on - strand, within CCNA_02618at 2766.878 kb on - strand, within CCNA_02618at 2766.883 kb on + strand, within CCNA_02618at 2766.887 kb on - strand, within CCNA_02618at 2766.924 kb on + strand, within CCNA_02618at 2766.924 kb on + strand, within CCNA_02618at 2766.929 kb on + strand, within CCNA_02618at 2766.932 kb on - strand, within CCNA_02618at 2766.937 kb on + strand, within CCNA_02618at 2766.937 kb on - strand, within CCNA_02618at 2766.946 kb on + strand, within CCNA_02618at 2766.947 kb on + strand, within CCNA_02618at 2766.962 kb on + strand, within CCNA_02618at 2766.962 kb on + strand, within CCNA_02618at 2766.962 kb on + strand, within CCNA_02618at 2766.970 kb on - strand, within CCNA_02618at 2766.970 kb on - strand, within CCNA_02618at 2766.979 kb on + strand, within CCNA_02618at 2766.987 kb on - strand, within CCNA_02618at 2766.996 kb on - strand, within CCNA_02618at 2767.011 kb on - strand, within CCNA_02618at 2767.209 kb on + strandat 2767.223 kb on + strandat 2767.295 kb on - strandat 2767.317 kb on + strand, within CCNA_02619at 2767.332 kb on - strand, within CCNA_02619at 2767.349 kb on - strand, within CCNA_02619at 2767.414 kb on + strand, within CCNA_02619at 2767.421 kb on + strand, within CCNA_02619at 2767.421 kb on + strand, within CCNA_02619at 2767.434 kb on + strand, within CCNA_02619at 2767.443 kb on - strand, within CCNA_02619at 2767.479 kb on + strand, within CCNA_02619at 2767.480 kb on - strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.510 kb on + strand, within CCNA_02619at 2767.512 kb on + strand, within CCNA_02619at 2767.601 kb on + strand, within CCNA_02619at 2767.609 kb on - strand, within CCNA_02619at 2767.617 kb on + strand, within CCNA_02619at 2767.629 kb on + strand, within CCNA_02619at 2767.637 kb on - strand, within CCNA_02619at 2767.656 kb on - strand, within CCNA_02619at 2767.718 kb on + strand, within CCNA_02619at 2767.718 kb on + strand, within CCNA_02619at 2767.726 kb on - strand, within CCNA_02619at 2767.732 kb on - strand, within CCNA_02619at 2767.736 kb on + strand, within CCNA_02619at 2767.742 kb on - strand, within CCNA_02619at 2767.744 kb on - strand, within CCNA_02619at 2767.769 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.809 kb on - strand, within CCNA_02619at 2767.877 kb on + strand, within CCNA_02619at 2767.877 kb on + strand, within CCNA_02619at 2767.943 kb on + strand, within CCNA_02619at 2767.964 kb on + strand, within CCNA_02619at 2767.991 kb on + strand, within CCNA_02619at 2768.317 kb on + strand, within CCNA_02620at 2768.317 kb on + strand, within CCNA_02620at 2768.336 kb on + strand, within CCNA_02620at 2768.351 kb on - strand, within CCNA_02620at 2768.396 kb on - strand, within CCNA_02620at 2768.401 kb on - strand, within CCNA_02620at 2768.409 kb on + strand, within CCNA_02620at 2768.492 kb on + strandat 2768.500 kb on - strandat 2768.537 kb on + strandat 2768.545 kb on - strandat 2768.599 kb on - strandat 2768.604 kb on + strandat 2768.611 kb on - strandat 2768.742 kb on + strand, within CCNA_02621at 2768.742 kb on + strand, within CCNA_02621at 2768.827 kb on + strand, within CCNA_02621at 2768.835 kb on - strand, within CCNA_02621at 2768.835 kb on - strand, within CCNA_02621at 2768.866 kb on - strand, within CCNA_02621at 2768.870 kb on + strand, within CCNA_02621at 2768.872 kb on + strand, within CCNA_02621at 2768.945 kb on + strand, within CCNA_02621at 2768.945 kb on + strand, within CCNA_02621at 2768.950 kb on + strand, within CCNA_02621at 2768.953 kb on - strand, within CCNA_02621at 2768.953 kb on - strand, within CCNA_02621at 2769.016 kb on + strand, within CCNA_02621at 2769.019 kb on - strand, within CCNA_02621at 2769.031 kb on + strand, within CCNA_02621at 2769.035 kb on - strand, within CCNA_02621at 2769.063 kb on + strand, within CCNA_02621at 2769.063 kb on + strand, within CCNA_02621at 2769.085 kb on + strand, within CCNA_02621at 2769.085 kb on + strand, within CCNA_02621

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,766,225 - CCNA_02617 0.77 +0.6
2,766,227 - CCNA_02617 0.78 +0.0
2,766,229 + CCNA_02617 0.78 +0.8
2,766,234 + CCNA_02617 0.78 +0.3
2,766,239 + CCNA_02617 0.79 -0.8
2,766,239 + CCNA_02617 0.79 -0.4
2,766,239 + CCNA_02617 0.79 -0.4
2,766,239 + CCNA_02617 0.79 -1.8
2,766,239 + CCNA_02617 0.79 -0.5
2,766,293 - CCNA_02617 0.83 +0.6
2,766,306 - CCNA_02617 0.85 -0.0
2,766,337 + CCNA_02617 0.87 -0.9
2,766,337 + CCNA_02617 0.87 -1.0
2,766,345 - CCNA_02617 0.88 +0.7
2,766,345 - CCNA_02617 0.88 +0.4
2,766,359 + CCNA_02617 0.89 +1.9
2,766,367 - -0.0
2,766,369 + -0.6
2,766,378 - +0.4
2,766,396 - -0.5
2,766,396 - +0.0
2,766,436 + +1.0
2,766,479 + -0.4
2,766,600 - +0.2
2,766,685 + CCNA_02618 0.18 -1.1
2,766,685 + CCNA_02618 0.18 -0.1
2,766,722 + CCNA_02618 0.26 +0.6
2,766,730 - CCNA_02618 0.28 -0.5
2,766,732 + CCNA_02618 0.28 -0.8
2,766,737 + CCNA_02618 0.29 +0.1
2,766,737 + CCNA_02618 0.29 -0.5
2,766,757 - CCNA_02618 0.33 -0.2
2,766,791 + CCNA_02618 0.41 -0.2
2,766,791 + CCNA_02618 0.41 +1.5
2,766,791 + CCNA_02618 0.41 -0.6
2,766,799 - CCNA_02618 0.42 +0.7
2,766,853 + CCNA_02618 0.54 -1.4
2,766,873 - CCNA_02618 0.58 -0.4
2,766,873 - CCNA_02618 0.58 +0.8
2,766,878 - CCNA_02618 0.59 +0.1
2,766,883 + CCNA_02618 0.60 -0.4
2,766,887 - CCNA_02618 0.61 -0.1
2,766,924 + CCNA_02618 0.69 +0.9
2,766,924 + CCNA_02618 0.69 -0.7
2,766,929 + CCNA_02618 0.70 -0.4
2,766,932 - CCNA_02618 0.70 -0.1
2,766,937 + CCNA_02618 0.72 +1.3
2,766,937 - CCNA_02618 0.72 +0.0
2,766,946 + CCNA_02618 0.73 -1.8
2,766,947 + CCNA_02618 0.74 +0.9
2,766,962 + CCNA_02618 0.77 +0.4
2,766,962 + CCNA_02618 0.77 -0.0
2,766,962 + CCNA_02618 0.77 -0.9
2,766,970 - CCNA_02618 0.79 +0.2
2,766,970 - CCNA_02618 0.79 +0.1
2,766,979 + CCNA_02618 0.80 +0.2
2,766,987 - CCNA_02618 0.82 +0.5
2,766,996 - CCNA_02618 0.84 +0.8
2,767,011 - CCNA_02618 0.87 -0.3
2,767,209 + +0.4
2,767,223 + -0.2
2,767,295 - +0.0
2,767,317 + CCNA_02619 0.12 +0.6
2,767,332 - CCNA_02619 0.14 -0.5
2,767,349 - CCNA_02619 0.16 +0.2
2,767,414 + CCNA_02619 0.23 +0.6
2,767,421 + CCNA_02619 0.24 +0.4
2,767,421 + CCNA_02619 0.24 +0.1
2,767,434 + CCNA_02619 0.25 -0.1
2,767,443 - CCNA_02619 0.26 -0.3
2,767,479 + CCNA_02619 0.30 +1.0
2,767,480 - CCNA_02619 0.30 +0.2
2,767,492 + CCNA_02619 0.32 -0.4
2,767,492 + CCNA_02619 0.32 -0.9
2,767,492 + CCNA_02619 0.32 +0.7
2,767,500 - CCNA_02619 0.32 -0.3
2,767,500 - CCNA_02619 0.32 +0.1
2,767,500 - CCNA_02619 0.32 +0.8
2,767,500 - CCNA_02619 0.32 +0.4
2,767,500 - CCNA_02619 0.32 +0.3
2,767,510 + CCNA_02619 0.34 +0.5
2,767,512 + CCNA_02619 0.34 +0.4
2,767,601 + CCNA_02619 0.44 +1.0
2,767,609 - CCNA_02619 0.44 +0.7
2,767,617 + CCNA_02619 0.45 +0.2
2,767,629 + CCNA_02619 0.47 +0.7
2,767,637 - CCNA_02619 0.48 -0.1
2,767,656 - CCNA_02619 0.50 -0.7
2,767,718 + CCNA_02619 0.57 +0.5
2,767,718 + CCNA_02619 0.57 +1.0
2,767,726 - CCNA_02619 0.57 -0.3
2,767,732 - CCNA_02619 0.58 +1.1
2,767,736 + CCNA_02619 0.58 +0.6
2,767,742 - CCNA_02619 0.59 +0.7
2,767,744 - CCNA_02619 0.59 +0.1
2,767,769 + CCNA_02619 0.62 +1.2
2,767,770 + CCNA_02619 0.62 +0.6
2,767,770 + CCNA_02619 0.62 +1.9
2,767,770 + CCNA_02619 0.62 +1.6
2,767,778 - CCNA_02619 0.63 +0.2
2,767,778 - CCNA_02619 0.63 +0.3
2,767,778 - CCNA_02619 0.63 +0.7
2,767,809 - CCNA_02619 0.67 -0.6
2,767,877 + CCNA_02619 0.74 +1.0
2,767,877 + CCNA_02619 0.74 +0.3
2,767,943 + CCNA_02619 0.81 +1.4
2,767,964 + CCNA_02619 0.84 -0.0
2,767,991 + CCNA_02619 0.87 +0.1
2,768,317 + CCNA_02620 0.44 +0.5
2,768,317 + CCNA_02620 0.44 -0.6
2,768,336 + CCNA_02620 0.50 +0.0
2,768,351 - CCNA_02620 0.55 +0.4
2,768,396 - CCNA_02620 0.71 -0.4
2,768,401 - CCNA_02620 0.73 +1.4
2,768,409 + CCNA_02620 0.75 -0.7
2,768,492 + -0.9
2,768,500 - +0.6
2,768,537 + -0.5
2,768,545 - +0.0
2,768,599 - +0.8
2,768,604 + +0.3
2,768,611 - -0.9
2,768,742 + CCNA_02621 0.15 +0.1
2,768,742 + CCNA_02621 0.15 -0.6
2,768,827 + CCNA_02621 0.24 -0.0
2,768,835 - CCNA_02621 0.25 +0.3
2,768,835 - CCNA_02621 0.25 -0.3
2,768,866 - CCNA_02621 0.28 +0.9
2,768,870 + CCNA_02621 0.28 +0.0
2,768,872 + CCNA_02621 0.29 +0.2
2,768,945 + CCNA_02621 0.36 -1.9
2,768,945 + CCNA_02621 0.36 -0.2
2,768,950 + CCNA_02621 0.37 +0.1
2,768,953 - CCNA_02621 0.37 +0.8
2,768,953 - CCNA_02621 0.37 -1.0
2,769,016 + CCNA_02621 0.44 +0.2
2,769,019 - CCNA_02621 0.44 +0.7
2,769,031 + CCNA_02621 0.46 +0.4
2,769,035 - CCNA_02621 0.46 -0.5
2,769,063 + CCNA_02621 0.49 -0.9
2,769,063 + CCNA_02621 0.49 -1.1
2,769,085 + CCNA_02621 0.52 +0.9
2,769,085 + CCNA_02621 0.52 +2.1

Or see this region's nucleotide sequence