Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02608

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02607 and CCNA_02608 are separated by 155 nucleotidesCCNA_02608 and CCNA_02609 are separated by 10 nucleotidesCCNA_02609 and CCNA_02610 are separated by 32 nucleotides CCNA_02607: CCNA_02607 - isocitrate dehydrogenase, at 2,753,922 to 2,755,133 _02607 CCNA_02608: CCNA_02608 - hypothetical protein, at 2,755,289 to 2,755,867 _02608 CCNA_02609: CCNA_02609 - membrane transport protein, at 2,755,878 to 2,756,816 _02609 CCNA_02610: CCNA_02610 - glyoxalase family protein, at 2,756,849 to 2,757,226 _02610 Position (kb) 2755 2756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2755.136 kb on + strandat 2755.136 kb on - strandat 2755.136 kb on - strandat 2755.136 kb on - strandat 2755.166 kb on + strandat 2755.222 kb on - strandat 2755.222 kb on - strandat 2755.222 kb on - strandat 2755.222 kb on - strandat 2755.244 kb on + strandat 2755.245 kb on + strandat 2755.253 kb on - strandat 2755.253 kb on - strandat 2755.258 kb on - strandat 2755.258 kb on - strandat 2755.258 kb on - strandat 2755.281 kb on + strandat 2755.285 kb on + strandat 2755.285 kb on + strandat 2755.397 kb on + strand, within CCNA_02608at 2755.443 kb on + strand, within CCNA_02608at 2755.498 kb on + strand, within CCNA_02608at 2755.506 kb on - strand, within CCNA_02608at 2755.547 kb on + strand, within CCNA_02608at 2755.548 kb on + strand, within CCNA_02608at 2755.573 kb on + strand, within CCNA_02608at 2755.573 kb on + strand, within CCNA_02608at 2755.573 kb on + strand, within CCNA_02608at 2755.573 kb on + strand, within CCNA_02608at 2755.581 kb on - strand, within CCNA_02608at 2755.581 kb on - strand, within CCNA_02608at 2755.613 kb on + strand, within CCNA_02608at 2755.626 kb on + strand, within CCNA_02608at 2755.634 kb on - strand, within CCNA_02608at 2755.646 kb on + strand, within CCNA_02608at 2755.687 kb on - strand, within CCNA_02608at 2755.730 kb on + strand, within CCNA_02608at 2755.738 kb on - strand, within CCNA_02608at 2755.738 kb on - strand, within CCNA_02608at 2755.794 kb on + strand, within CCNA_02608at 2755.821 kb on - strandat 2755.837 kb on - strandat 2755.837 kb on - strandat 2755.856 kb on + strandat 2755.864 kb on - strandat 2755.864 kb on - strandat 2755.864 kb on - strandat 2755.893 kb on - strandat 2755.893 kb on - strandat 2756.022 kb on + strand, within CCNA_02609at 2756.030 kb on - strand, within CCNA_02609at 2756.051 kb on - strand, within CCNA_02609at 2756.071 kb on + strand, within CCNA_02609at 2756.145 kb on + strand, within CCNA_02609at 2756.155 kb on + strand, within CCNA_02609at 2756.155 kb on + strand, within CCNA_02609at 2756.155 kb on + strand, within CCNA_02609at 2756.163 kb on - strand, within CCNA_02609at 2756.227 kb on + strand, within CCNA_02609at 2756.251 kb on + strand, within CCNA_02609at 2756.313 kb on + strand, within CCNA_02609at 2756.313 kb on + strand, within CCNA_02609at 2756.313 kb on + strand, within CCNA_02609at 2756.354 kb on + strand, within CCNA_02609at 2756.422 kb on - strand, within CCNA_02609at 2756.422 kb on - strand, within CCNA_02609at 2756.429 kb on + strand, within CCNA_02609at 2756.437 kb on - strand, within CCNA_02609at 2756.437 kb on - strand, within CCNA_02609at 2756.444 kb on - strand, within CCNA_02609at 2756.505 kb on + strand, within CCNA_02609at 2756.505 kb on + strand, within CCNA_02609at 2756.516 kb on + strand, within CCNA_02609at 2756.580 kb on + strand, within CCNA_02609at 2756.580 kb on + strand, within CCNA_02609at 2756.581 kb on - strand, within CCNA_02609at 2756.581 kb on - strand, within CCNA_02609at 2756.587 kb on - strand, within CCNA_02609at 2756.588 kb on - strand, within CCNA_02609at 2756.588 kb on - strand, within CCNA_02609at 2756.631 kb on - strand, within CCNA_02609at 2756.660 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.694 kb on + strand, within CCNA_02609at 2756.707 kb on + strand, within CCNA_02609at 2756.833 kb on - strandat 2756.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,755,136 + +1.5
2,755,136 - +0.6
2,755,136 - +0.1
2,755,136 - -2.0
2,755,166 + +0.2
2,755,222 - +0.2
2,755,222 - -1.9
2,755,222 - -0.0
2,755,222 - -0.4
2,755,244 + +0.2
2,755,245 + +0.2
2,755,253 - +0.6
2,755,253 - -0.2
2,755,258 - -0.9
2,755,258 - +0.7
2,755,258 - +0.4
2,755,281 + +0.9
2,755,285 + +0.4
2,755,285 + +0.3
2,755,397 + CCNA_02608 0.19 +0.9
2,755,443 + CCNA_02608 0.27 -1.2
2,755,498 + CCNA_02608 0.36 +0.9
2,755,506 - CCNA_02608 0.37 -0.1
2,755,547 + CCNA_02608 0.45 +0.4
2,755,548 + CCNA_02608 0.45 +0.5
2,755,573 + CCNA_02608 0.49 -0.5
2,755,573 + CCNA_02608 0.49 +0.2
2,755,573 + CCNA_02608 0.49 +0.2
2,755,573 + CCNA_02608 0.49 +1.7
2,755,581 - CCNA_02608 0.50 +0.1
2,755,581 - CCNA_02608 0.50 -0.2
2,755,613 + CCNA_02608 0.56 +1.9
2,755,626 + CCNA_02608 0.58 -0.2
2,755,634 - CCNA_02608 0.60 +0.4
2,755,646 + CCNA_02608 0.62 -0.2
2,755,687 - CCNA_02608 0.69 +0.4
2,755,730 + CCNA_02608 0.76 +0.1
2,755,738 - CCNA_02608 0.78 -0.1
2,755,738 - CCNA_02608 0.78 +0.4
2,755,794 + CCNA_02608 0.87 +0.1
2,755,821 - -0.9
2,755,837 - -0.7
2,755,837 - -0.2
2,755,856 + +0.1
2,755,864 - +1.9
2,755,864 - -0.5
2,755,864 - +1.5
2,755,893 - +0.6
2,755,893 - -0.4
2,756,022 + CCNA_02609 0.15 +0.7
2,756,030 - CCNA_02609 0.16 +1.1
2,756,051 - CCNA_02609 0.18 +0.4
2,756,071 + CCNA_02609 0.21 +0.7
2,756,145 + CCNA_02609 0.28 +0.3
2,756,155 + CCNA_02609 0.29 +0.5
2,756,155 + CCNA_02609 0.29 -1.3
2,756,155 + CCNA_02609 0.29 +1.1
2,756,163 - CCNA_02609 0.30 -0.2
2,756,227 + CCNA_02609 0.37 -0.5
2,756,251 + CCNA_02609 0.40 +0.3
2,756,313 + CCNA_02609 0.46 +1.5
2,756,313 + CCNA_02609 0.46 +0.1
2,756,313 + CCNA_02609 0.46 +0.6
2,756,354 + CCNA_02609 0.51 +0.6
2,756,422 - CCNA_02609 0.58 +0.6
2,756,422 - CCNA_02609 0.58 +1.0
2,756,429 + CCNA_02609 0.59 +0.4
2,756,437 - CCNA_02609 0.60 -0.0
2,756,437 - CCNA_02609 0.60 -1.0
2,756,444 - CCNA_02609 0.60 -0.0
2,756,505 + CCNA_02609 0.67 +0.1
2,756,505 + CCNA_02609 0.67 +0.1
2,756,516 + CCNA_02609 0.68 +1.0
2,756,580 + CCNA_02609 0.75 +0.1
2,756,580 + CCNA_02609 0.75 +0.6
2,756,581 - CCNA_02609 0.75 -0.1
2,756,581 - CCNA_02609 0.75 -0.6
2,756,587 - CCNA_02609 0.76 -1.1
2,756,588 - CCNA_02609 0.76 +0.5
2,756,588 - CCNA_02609 0.76 -0.1
2,756,631 - CCNA_02609 0.80 -0.8
2,756,660 + CCNA_02609 0.83 -1.1
2,756,694 + CCNA_02609 0.87 +0.5
2,756,694 + CCNA_02609 0.87 -0.1
2,756,694 + CCNA_02609 0.87 -1.2
2,756,707 + CCNA_02609 0.88 -0.8
2,756,833 - -0.4
2,756,844 - +2.9

Or see this region's nucleotide sequence