Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02607 and CCNA_02608 are separated by 155 nucleotides CCNA_02608 and CCNA_02609 are separated by 10 nucleotides CCNA_02609 and CCNA_02610 are separated by 32 nucleotides
CCNA_02607: CCNA_02607 - isocitrate dehydrogenase, at 2,753,922 to 2,755,133
_02607
CCNA_02608: CCNA_02608 - hypothetical protein, at 2,755,289 to 2,755,867
_02608
CCNA_02609: CCNA_02609 - membrane transport protein, at 2,755,878 to 2,756,816
_02609
CCNA_02610: CCNA_02610 - glyoxalase family protein, at 2,756,849 to 2,757,226
_02610
Position (kb)
2755
2756 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2755.136 kb on + strand at 2755.136 kb on - strand at 2755.136 kb on - strand at 2755.136 kb on - strand at 2755.166 kb on + strand at 2755.222 kb on - strand at 2755.222 kb on - strand at 2755.222 kb on - strand at 2755.222 kb on - strand at 2755.244 kb on + strand at 2755.245 kb on + strand at 2755.253 kb on - strand at 2755.253 kb on - strand at 2755.258 kb on - strand at 2755.258 kb on - strand at 2755.258 kb on - strand at 2755.281 kb on + strand at 2755.285 kb on + strand at 2755.285 kb on + strand at 2755.397 kb on + strand, within CCNA_02608 at 2755.443 kb on + strand, within CCNA_02608 at 2755.498 kb on + strand, within CCNA_02608 at 2755.506 kb on - strand, within CCNA_02608 at 2755.547 kb on + strand, within CCNA_02608 at 2755.548 kb on + strand, within CCNA_02608 at 2755.573 kb on + strand, within CCNA_02608 at 2755.573 kb on + strand, within CCNA_02608 at 2755.573 kb on + strand, within CCNA_02608 at 2755.573 kb on + strand, within CCNA_02608 at 2755.581 kb on - strand, within CCNA_02608 at 2755.581 kb on - strand, within CCNA_02608 at 2755.613 kb on + strand, within CCNA_02608 at 2755.626 kb on + strand, within CCNA_02608 at 2755.634 kb on - strand, within CCNA_02608 at 2755.646 kb on + strand, within CCNA_02608 at 2755.687 kb on - strand, within CCNA_02608 at 2755.730 kb on + strand, within CCNA_02608 at 2755.738 kb on - strand, within CCNA_02608 at 2755.738 kb on - strand, within CCNA_02608 at 2755.794 kb on + strand, within CCNA_02608 at 2755.821 kb on - strand at 2755.837 kb on - strand at 2755.837 kb on - strand at 2755.856 kb on + strand at 2755.864 kb on - strand at 2755.864 kb on - strand at 2755.864 kb on - strand at 2755.893 kb on - strand at 2755.893 kb on - strand at 2756.022 kb on + strand, within CCNA_02609 at 2756.030 kb on - strand, within CCNA_02609 at 2756.051 kb on - strand, within CCNA_02609 at 2756.071 kb on + strand, within CCNA_02609 at 2756.145 kb on + strand, within CCNA_02609 at 2756.155 kb on + strand, within CCNA_02609 at 2756.155 kb on + strand, within CCNA_02609 at 2756.155 kb on + strand, within CCNA_02609 at 2756.163 kb on - strand, within CCNA_02609 at 2756.227 kb on + strand, within CCNA_02609 at 2756.251 kb on + strand, within CCNA_02609 at 2756.313 kb on + strand, within CCNA_02609 at 2756.313 kb on + strand, within CCNA_02609 at 2756.313 kb on + strand, within CCNA_02609 at 2756.354 kb on + strand, within CCNA_02609 at 2756.422 kb on - strand, within CCNA_02609 at 2756.422 kb on - strand, within CCNA_02609 at 2756.429 kb on + strand, within CCNA_02609 at 2756.437 kb on - strand, within CCNA_02609 at 2756.437 kb on - strand, within CCNA_02609 at 2756.444 kb on - strand, within CCNA_02609 at 2756.505 kb on + strand, within CCNA_02609 at 2756.505 kb on + strand, within CCNA_02609 at 2756.516 kb on + strand, within CCNA_02609 at 2756.580 kb on + strand, within CCNA_02609 at 2756.580 kb on + strand, within CCNA_02609 at 2756.581 kb on - strand, within CCNA_02609 at 2756.581 kb on - strand, within CCNA_02609 at 2756.587 kb on - strand, within CCNA_02609 at 2756.588 kb on - strand, within CCNA_02609 at 2756.588 kb on - strand, within CCNA_02609 at 2756.631 kb on - strand, within CCNA_02609 at 2756.660 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.694 kb on + strand, within CCNA_02609 at 2756.707 kb on + strand, within CCNA_02609 at 2756.833 kb on - strand at 2756.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,755,136 + +1.5 2,755,136 - +0.6 2,755,136 - +0.1 2,755,136 - -2.0 2,755,166 + +0.2 2,755,222 - +0.2 2,755,222 - -1.9 2,755,222 - -0.0 2,755,222 - -0.4 2,755,244 + +0.2 2,755,245 + +0.2 2,755,253 - +0.6 2,755,253 - -0.2 2,755,258 - -0.9 2,755,258 - +0.7 2,755,258 - +0.4 2,755,281 + +0.9 2,755,285 + +0.4 2,755,285 + +0.3 2,755,397 + CCNA_02608 0.19 +0.9 2,755,443 + CCNA_02608 0.27 -1.2 2,755,498 + CCNA_02608 0.36 +0.9 2,755,506 - CCNA_02608 0.37 -0.1 2,755,547 + CCNA_02608 0.45 +0.4 2,755,548 + CCNA_02608 0.45 +0.5 2,755,573 + CCNA_02608 0.49 -0.5 2,755,573 + CCNA_02608 0.49 +0.2 2,755,573 + CCNA_02608 0.49 +0.2 2,755,573 + CCNA_02608 0.49 +1.7 2,755,581 - CCNA_02608 0.50 +0.1 2,755,581 - CCNA_02608 0.50 -0.2 2,755,613 + CCNA_02608 0.56 +1.9 2,755,626 + CCNA_02608 0.58 -0.2 2,755,634 - CCNA_02608 0.60 +0.4 2,755,646 + CCNA_02608 0.62 -0.2 2,755,687 - CCNA_02608 0.69 +0.4 2,755,730 + CCNA_02608 0.76 +0.1 2,755,738 - CCNA_02608 0.78 -0.1 2,755,738 - CCNA_02608 0.78 +0.4 2,755,794 + CCNA_02608 0.87 +0.1 2,755,821 - -0.9 2,755,837 - -0.7 2,755,837 - -0.2 2,755,856 + +0.1 2,755,864 - +1.9 2,755,864 - -0.5 2,755,864 - +1.5 2,755,893 - +0.6 2,755,893 - -0.4 2,756,022 + CCNA_02609 0.15 +0.7 2,756,030 - CCNA_02609 0.16 +1.1 2,756,051 - CCNA_02609 0.18 +0.4 2,756,071 + CCNA_02609 0.21 +0.7 2,756,145 + CCNA_02609 0.28 +0.3 2,756,155 + CCNA_02609 0.29 +0.5 2,756,155 + CCNA_02609 0.29 -1.3 2,756,155 + CCNA_02609 0.29 +1.1 2,756,163 - CCNA_02609 0.30 -0.2 2,756,227 + CCNA_02609 0.37 -0.5 2,756,251 + CCNA_02609 0.40 +0.3 2,756,313 + CCNA_02609 0.46 +1.5 2,756,313 + CCNA_02609 0.46 +0.1 2,756,313 + CCNA_02609 0.46 +0.6 2,756,354 + CCNA_02609 0.51 +0.6 2,756,422 - CCNA_02609 0.58 +0.6 2,756,422 - CCNA_02609 0.58 +1.0 2,756,429 + CCNA_02609 0.59 +0.4 2,756,437 - CCNA_02609 0.60 -0.0 2,756,437 - CCNA_02609 0.60 -1.0 2,756,444 - CCNA_02609 0.60 -0.0 2,756,505 + CCNA_02609 0.67 +0.1 2,756,505 + CCNA_02609 0.67 +0.1 2,756,516 + CCNA_02609 0.68 +1.0 2,756,580 + CCNA_02609 0.75 +0.1 2,756,580 + CCNA_02609 0.75 +0.6 2,756,581 - CCNA_02609 0.75 -0.1 2,756,581 - CCNA_02609 0.75 -0.6 2,756,587 - CCNA_02609 0.76 -1.1 2,756,588 - CCNA_02609 0.76 +0.5 2,756,588 - CCNA_02609 0.76 -0.1 2,756,631 - CCNA_02609 0.80 -0.8 2,756,660 + CCNA_02609 0.83 -1.1 2,756,694 + CCNA_02609 0.87 +0.5 2,756,694 + CCNA_02609 0.87 -0.1 2,756,694 + CCNA_02609 0.87 -1.2 2,756,707 + CCNA_02609 0.88 -0.8 2,756,833 - -0.4 2,756,844 - +2.9
Or see this region's nucleotide sequence