Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02591 and CCNA_02592 are separated by 16 nucleotides CCNA_02592 and CCNA_02593 are separated by 399 nucleotides CCNA_02593 and CCNA_02594 are separated by 67 nucleotides
CCNA_02591: CCNA_02591 - glutaredoxin, at 2,740,556 to 2,740,897
_02591
CCNA_02592: CCNA_02592 - thioesterase, at 2,740,914 to 2,741,333
_02592
CCNA_02593: CCNA_02593 - hypothetical protein, at 2,741,733 to 2,742,110
_02593
CCNA_02594: CCNA_02594 - heat shock endopeptidase HtpX, at 2,742,178 to 2,743,128
_02594
Position (kb)
2741
2742
2743 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2740.887 kb on - strand at 2740.900 kb on - strand at 2740.950 kb on + strand at 2740.950 kb on + strand at 2740.951 kb on - strand at 2741.014 kb on + strand, within CCNA_02592 at 2741.030 kb on + strand, within CCNA_02592 at 2741.031 kb on + strand, within CCNA_02592 at 2741.039 kb on - strand, within CCNA_02592 at 2741.054 kb on + strand, within CCNA_02592 at 2741.054 kb on + strand, within CCNA_02592 at 2741.065 kb on + strand, within CCNA_02592 at 2741.065 kb on + strand, within CCNA_02592 at 2741.067 kb on - strand, within CCNA_02592 at 2741.082 kb on + strand, within CCNA_02592 at 2741.082 kb on + strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.090 kb on - strand, within CCNA_02592 at 2741.162 kb on - strand, within CCNA_02592 at 2741.162 kb on - strand, within CCNA_02592 at 2741.236 kb on - strand, within CCNA_02592 at 2741.330 kb on - strand at 2741.332 kb on + strand at 2741.335 kb on - strand at 2741.373 kb on + strand at 2741.408 kb on + strand at 2741.445 kb on + strand at 2741.453 kb on - strand at 2741.453 kb on - strand at 2741.545 kb on + strand at 2741.552 kb on - strand at 2741.599 kb on - strand at 2741.618 kb on + strand at 2741.626 kb on - strand at 2741.667 kb on - strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.712 kb on + strand at 2741.720 kb on - strand at 2741.720 kb on - strand at 2741.720 kb on - strand at 2741.757 kb on + strand at 2741.767 kb on + strand at 2741.811 kb on - strand, within CCNA_02593 at 2741.841 kb on + strand, within CCNA_02593 at 2741.896 kb on + strand, within CCNA_02593 at 2741.928 kb on + strand, within CCNA_02593 at 2741.936 kb on - strand, within CCNA_02593 at 2741.994 kb on - strand, within CCNA_02593 at 2742.011 kb on - strand, within CCNA_02593 at 2742.011 kb on - strand, within CCNA_02593 at 2742.021 kb on - strand, within CCNA_02593 at 2742.033 kb on + strand, within CCNA_02593 at 2742.038 kb on - strand, within CCNA_02593 at 2742.038 kb on - strand, within CCNA_02593 at 2742.078 kb on + strand at 2742.078 kb on + strand at 2742.086 kb on - strand at 2742.098 kb on - strand at 2742.111 kb on - strand at 2742.113 kb on - strand at 2742.133 kb on + strand at 2742.146 kb on + strand at 2742.163 kb on + strand at 2742.166 kb on - strand at 2742.171 kb on + strand at 2742.179 kb on - strand at 2742.189 kb on - strand at 2742.189 kb on - strand at 2742.257 kb on + strand at 2742.290 kb on + strand, within CCNA_02594 at 2742.295 kb on + strand, within CCNA_02594 at 2742.295 kb on + strand, within CCNA_02594 at 2742.303 kb on - strand, within CCNA_02594 at 2742.303 kb on - strand, within CCNA_02594 at 2742.364 kb on + strand, within CCNA_02594 at 2742.392 kb on + strand, within CCNA_02594 at 2742.392 kb on + strand, within CCNA_02594 at 2742.426 kb on - strand, within CCNA_02594 at 2742.426 kb on - strand, within CCNA_02594 at 2742.431 kb on + strand, within CCNA_02594 at 2742.433 kb on + strand, within CCNA_02594 at 2742.441 kb on - strand, within CCNA_02594 at 2742.456 kb on - strand, within CCNA_02594 at 2742.505 kb on - strand, within CCNA_02594 at 2742.528 kb on + strand, within CCNA_02594 at 2742.558 kb on - strand, within CCNA_02594 at 2742.562 kb on + strand, within CCNA_02594 at 2742.572 kb on + strand, within CCNA_02594 at 2742.594 kb on - strand, within CCNA_02594 at 2742.654 kb on - strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.686 kb on + strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.694 kb on - strand, within CCNA_02594 at 2742.827 kb on + strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.835 kb on - strand, within CCNA_02594 at 2742.844 kb on + strand, within CCNA_02594 at 2742.844 kb on + strand, within CCNA_02594 at 2742.852 kb on - strand, within CCNA_02594 at 2742.852 kb on - strand, within CCNA_02594 at 2742.957 kb on + strand, within CCNA_02594 at 2743.015 kb on - strand, within CCNA_02594 at 2743.019 kb on + strand, within CCNA_02594 at 2743.081 kb on - strand at 2743.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,740,887 - -2.1 2,740,900 - -1.2 2,740,950 + -0.0 2,740,950 + +0.6 2,740,951 - -0.8 2,741,014 + CCNA_02592 0.24 +0.7 2,741,030 + CCNA_02592 0.28 -0.1 2,741,031 + CCNA_02592 0.28 -0.1 2,741,039 - CCNA_02592 0.30 +0.0 2,741,054 + CCNA_02592 0.33 -0.9 2,741,054 + CCNA_02592 0.33 +0.2 2,741,065 + CCNA_02592 0.36 +0.1 2,741,065 + CCNA_02592 0.36 +0.5 2,741,067 - CCNA_02592 0.36 +0.1 2,741,082 + CCNA_02592 0.40 +0.4 2,741,082 + CCNA_02592 0.40 -1.0 2,741,090 - CCNA_02592 0.42 -0.8 2,741,090 - CCNA_02592 0.42 -0.6 2,741,090 - CCNA_02592 0.42 -0.0 2,741,162 - CCNA_02592 0.59 +0.7 2,741,162 - CCNA_02592 0.59 +1.9 2,741,236 - CCNA_02592 0.77 -0.4 2,741,330 - -0.6 2,741,332 + +0.0 2,741,335 - +1.3 2,741,373 + +0.5 2,741,408 + +0.3 2,741,445 + -0.6 2,741,453 - -0.2 2,741,453 - +0.8 2,741,545 + +0.5 2,741,552 - -1.3 2,741,599 - -1.2 2,741,618 + +0.4 2,741,626 - -0.6 2,741,667 - -0.3 2,741,712 + +0.2 2,741,712 + +0.7 2,741,712 + +0.9 2,741,712 + -0.4 2,741,712 + -1.1 2,741,712 + -0.2 2,741,720 - +0.6 2,741,720 - +0.2 2,741,720 - +0.9 2,741,757 + +0.9 2,741,767 + +0.0 2,741,811 - CCNA_02593 0.21 -0.1 2,741,841 + CCNA_02593 0.29 +0.1 2,741,896 + CCNA_02593 0.43 +1.1 2,741,928 + CCNA_02593 0.52 +0.4 2,741,936 - CCNA_02593 0.54 -0.2 2,741,994 - CCNA_02593 0.69 -0.0 2,742,011 - CCNA_02593 0.74 +1.4 2,742,011 - CCNA_02593 0.74 -0.2 2,742,021 - CCNA_02593 0.76 +1.3 2,742,033 + CCNA_02593 0.79 +1.0 2,742,038 - CCNA_02593 0.81 +0.1 2,742,038 - CCNA_02593 0.81 +0.7 2,742,078 + -1.6 2,742,078 + -0.8 2,742,086 - +0.2 2,742,098 - +0.7 2,742,111 - +0.2 2,742,113 - +0.2 2,742,133 + -0.6 2,742,146 + -1.2 2,742,163 + +0.1 2,742,166 - +0.3 2,742,171 + -1.7 2,742,179 - +0.7 2,742,189 - -0.1 2,742,189 - -0.7 2,742,257 + +0.3 2,742,290 + CCNA_02594 0.12 +0.6 2,742,295 + CCNA_02594 0.12 +0.1 2,742,295 + CCNA_02594 0.12 +0.3 2,742,303 - CCNA_02594 0.13 +0.1 2,742,303 - CCNA_02594 0.13 +1.1 2,742,364 + CCNA_02594 0.20 -2.0 2,742,392 + CCNA_02594 0.23 +0.4 2,742,392 + CCNA_02594 0.23 +0.8 2,742,426 - CCNA_02594 0.26 +0.3 2,742,426 - CCNA_02594 0.26 +0.0 2,742,431 + CCNA_02594 0.27 +0.2 2,742,433 + CCNA_02594 0.27 +0.7 2,742,441 - CCNA_02594 0.28 -0.8 2,742,456 - CCNA_02594 0.29 -0.3 2,742,505 - CCNA_02594 0.34 -0.8 2,742,528 + CCNA_02594 0.37 -1.0 2,742,558 - CCNA_02594 0.40 +0.3 2,742,562 + CCNA_02594 0.40 -0.6 2,742,572 + CCNA_02594 0.41 +0.3 2,742,594 - CCNA_02594 0.44 +0.0 2,742,654 - CCNA_02594 0.50 -1.2 2,742,686 + CCNA_02594 0.53 +0.0 2,742,686 + CCNA_02594 0.53 +0.1 2,742,686 + CCNA_02594 0.53 -1.1 2,742,686 + CCNA_02594 0.53 +0.3 2,742,686 + CCNA_02594 0.53 -0.0 2,742,694 - CCNA_02594 0.54 -0.5 2,742,694 - CCNA_02594 0.54 +0.0 2,742,827 + CCNA_02594 0.68 -2.3 2,742,835 - CCNA_02594 0.69 +0.4 2,742,835 - CCNA_02594 0.69 +0.5 2,742,844 + CCNA_02594 0.70 +0.1 2,742,844 + CCNA_02594 0.70 -0.9 2,742,852 - CCNA_02594 0.71 +0.2 2,742,852 - CCNA_02594 0.71 +0.4 2,742,957 + CCNA_02594 0.82 +0.3 2,743,015 - CCNA_02594 0.88 +0.6 2,743,019 + CCNA_02594 0.88 +1.9 2,743,081 - -0.0 2,743,083 + +1.1
Or see this region's nucleotide sequence