Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02574

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02572 and CCNA_02573 are separated by 2 nucleotidesCCNA_02573 and CCNA_02574 overlap by 14 nucleotidesCCNA_02574 and CCNA_02575 are separated by 61 nucleotidesCCNA_02575 and CCNA_02576 are separated by 386 nucleotides CCNA_02572: CCNA_02572 - adenylosuccinate lyase, at 2,724,537 to 2,725,847 _02572 CCNA_02573: CCNA_02573 - proline hydroxylase, at 2,725,850 to 2,726,593 _02573 CCNA_02574: CCNA_02574 - MUG-like uracil-DNA glycosylase family protein, at 2,726,580 to 2,727,155 _02574 CCNA_02575: CCNA_02575 - hypothetical protein, at 2,727,217 to 2,727,531 _02575 CCNA_02576: CCNA_02576 - phosphoribosylamidoimidazole-succinocarboxamide synthase, at 2,727,918 to 2,728,676 _02576 Position (kb) 2726 2727 2728Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2725.673 kb on + strand, within CCNA_02572at 2725.681 kb on - strand, within CCNA_02572at 2725.681 kb on - strand, within CCNA_02572at 2725.750 kb on + strandat 2725.896 kb on - strandat 2725.938 kb on + strand, within CCNA_02573at 2725.991 kb on - strand, within CCNA_02573at 2725.991 kb on - strand, within CCNA_02573at 2725.991 kb on - strand, within CCNA_02573at 2726.039 kb on + strand, within CCNA_02573at 2726.088 kb on - strand, within CCNA_02573at 2726.140 kb on - strand, within CCNA_02573at 2726.174 kb on - strand, within CCNA_02573at 2726.224 kb on - strand, within CCNA_02573at 2726.224 kb on - strand, within CCNA_02573at 2726.226 kb on + strand, within CCNA_02573at 2726.234 kb on - strand, within CCNA_02573at 2726.281 kb on + strand, within CCNA_02573at 2726.293 kb on + strand, within CCNA_02573at 2726.319 kb on + strand, within CCNA_02573at 2726.325 kb on + strand, within CCNA_02573at 2726.364 kb on + strand, within CCNA_02573at 2726.364 kb on + strand, within CCNA_02573at 2726.370 kb on + strand, within CCNA_02573at 2726.372 kb on - strand, within CCNA_02573at 2726.378 kb on - strand, within CCNA_02573at 2726.384 kb on + strand, within CCNA_02573at 2726.419 kb on + strand, within CCNA_02573at 2726.459 kb on - strand, within CCNA_02573at 2726.479 kb on - strand, within CCNA_02573at 2726.481 kb on + strand, within CCNA_02573at 2726.481 kb on + strand, within CCNA_02573at 2726.497 kb on + strand, within CCNA_02573at 2726.542 kb on - strandat 2726.592 kb on + strandat 2726.602 kb on - strandat 2726.644 kb on - strand, within CCNA_02574at 2726.681 kb on + strand, within CCNA_02574at 2726.689 kb on - strand, within CCNA_02574at 2726.689 kb on - strand, within CCNA_02574at 2726.689 kb on - strand, within CCNA_02574at 2726.689 kb on - strand, within CCNA_02574at 2726.703 kb on + strand, within CCNA_02574at 2726.747 kb on - strand, within CCNA_02574at 2726.772 kb on + strand, within CCNA_02574at 2726.873 kb on - strand, within CCNA_02574at 2726.969 kb on + strand, within CCNA_02574at 2726.977 kb on - strand, within CCNA_02574at 2726.977 kb on - strand, within CCNA_02574at 2726.977 kb on - strand, within CCNA_02574at 2726.982 kb on - strand, within CCNA_02574at 2726.992 kb on + strand, within CCNA_02574at 2726.995 kb on - strand, within CCNA_02574at 2727.002 kb on + strand, within CCNA_02574at 2727.010 kb on - strand, within CCNA_02574at 2727.083 kb on + strand, within CCNA_02574at 2727.083 kb on + strand, within CCNA_02574at 2727.091 kb on - strand, within CCNA_02574at 2727.091 kb on - strand, within CCNA_02574at 2727.096 kb on - strand, within CCNA_02574at 2727.106 kb on + strandat 2727.192 kb on - strandat 2727.197 kb on - strandat 2727.227 kb on - strandat 2727.227 kb on - strandat 2727.227 kb on - strandat 2727.232 kb on - strandat 2727.274 kb on + strand, within CCNA_02575at 2727.305 kb on + strand, within CCNA_02575at 2727.313 kb on - strand, within CCNA_02575at 2727.315 kb on - strand, within CCNA_02575at 2727.390 kb on - strand, within CCNA_02575at 2727.408 kb on - strand, within CCNA_02575at 2727.440 kb on + strand, within CCNA_02575at 2727.440 kb on + strand, within CCNA_02575at 2727.466 kb on - strand, within CCNA_02575at 2727.645 kb on - strandat 2727.653 kb on + strandat 2727.655 kb on - strandat 2727.667 kb on + strandat 2727.801 kb on - strandat 2727.810 kb on + strandat 2727.832 kb on + strandat 2727.832 kb on + strandat 2727.832 kb on + strandat 2727.832 kb on + strandat 2727.840 kb on - strandat 2727.876 kb on - strandat 2727.918 kb on + strandat 2727.948 kb on + strandat 2727.972 kb on + strandat 2728.046 kb on + strand, within CCNA_02576at 2728.088 kb on - strand, within CCNA_02576at 2728.096 kb on - strand, within CCNA_02576at 2728.096 kb on - strand, within CCNA_02576at 2728.096 kb on - strand, within CCNA_02576at 2728.116 kb on + strand, within CCNA_02576at 2728.138 kb on + strand, within CCNA_02576

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,725,673 + CCNA_02572 0.87 -0.2
2,725,681 - CCNA_02572 0.87 -1.8
2,725,681 - CCNA_02572 0.87 +2.9
2,725,750 + -2.2
2,725,896 - +0.2
2,725,938 + CCNA_02573 0.12 -0.1
2,725,991 - CCNA_02573 0.19 -1.2
2,725,991 - CCNA_02573 0.19 +0.4
2,725,991 - CCNA_02573 0.19 -0.9
2,726,039 + CCNA_02573 0.25 +0.0
2,726,088 - CCNA_02573 0.32 -0.5
2,726,140 - CCNA_02573 0.39 +1.5
2,726,174 - CCNA_02573 0.44 -0.9
2,726,224 - CCNA_02573 0.50 -0.1
2,726,224 - CCNA_02573 0.50 -0.2
2,726,226 + CCNA_02573 0.51 +0.9
2,726,234 - CCNA_02573 0.52 +0.0
2,726,281 + CCNA_02573 0.58 +0.9
2,726,293 + CCNA_02573 0.60 -0.4
2,726,319 + CCNA_02573 0.63 +1.0
2,726,325 + CCNA_02573 0.64 -0.5
2,726,364 + CCNA_02573 0.69 +0.1
2,726,364 + CCNA_02573 0.69 +0.1
2,726,370 + CCNA_02573 0.70 -0.3
2,726,372 - CCNA_02573 0.70 +0.6
2,726,378 - CCNA_02573 0.71 +0.3
2,726,384 + CCNA_02573 0.72 +0.9
2,726,419 + CCNA_02573 0.76 +0.2
2,726,459 - CCNA_02573 0.82 -0.4
2,726,479 - CCNA_02573 0.85 -0.6
2,726,481 + CCNA_02573 0.85 -0.6
2,726,481 + CCNA_02573 0.85 +0.3
2,726,497 + CCNA_02573 0.87 -0.1
2,726,542 - -0.5
2,726,592 + +0.6
2,726,602 - -0.2
2,726,644 - CCNA_02574 0.11 +0.5
2,726,681 + CCNA_02574 0.18 +0.6
2,726,689 - CCNA_02574 0.19 +0.4
2,726,689 - CCNA_02574 0.19 -1.4
2,726,689 - CCNA_02574 0.19 -1.5
2,726,689 - CCNA_02574 0.19 -2.0
2,726,703 + CCNA_02574 0.21 +0.3
2,726,747 - CCNA_02574 0.29 +0.0
2,726,772 + CCNA_02574 0.33 +1.7
2,726,873 - CCNA_02574 0.51 +0.7
2,726,969 + CCNA_02574 0.68 +0.4
2,726,977 - CCNA_02574 0.69 +0.1
2,726,977 - CCNA_02574 0.69 +1.1
2,726,977 - CCNA_02574 0.69 -0.1
2,726,982 - CCNA_02574 0.70 +0.3
2,726,992 + CCNA_02574 0.72 +0.2
2,726,995 - CCNA_02574 0.72 +0.0
2,727,002 + CCNA_02574 0.73 +0.8
2,727,010 - CCNA_02574 0.75 +0.5
2,727,083 + CCNA_02574 0.87 -0.9
2,727,083 + CCNA_02574 0.87 +1.3
2,727,091 - CCNA_02574 0.89 +0.8
2,727,091 - CCNA_02574 0.89 +1.2
2,727,096 - CCNA_02574 0.90 +0.0
2,727,106 + +0.2
2,727,192 - +0.1
2,727,197 - -1.2
2,727,227 - +0.5
2,727,227 - +0.9
2,727,227 - +0.1
2,727,232 - +0.0
2,727,274 + CCNA_02575 0.18 +0.8
2,727,305 + CCNA_02575 0.28 +3.5
2,727,313 - CCNA_02575 0.30 +0.2
2,727,315 - CCNA_02575 0.31 -0.4
2,727,390 - CCNA_02575 0.55 -1.4
2,727,408 - CCNA_02575 0.61 -0.1
2,727,440 + CCNA_02575 0.71 -1.1
2,727,440 + CCNA_02575 0.71 +0.9
2,727,466 - CCNA_02575 0.79 -0.2
2,727,645 - +1.6
2,727,653 + +0.6
2,727,655 - +0.6
2,727,667 + -0.7
2,727,801 - -0.4
2,727,810 + -0.1
2,727,832 + +0.3
2,727,832 + +0.3
2,727,832 + +0.8
2,727,832 + +0.6
2,727,840 - -0.5
2,727,876 - +0.2
2,727,918 + +0.3
2,727,948 + -0.5
2,727,972 + +0.3
2,728,046 + CCNA_02576 0.17 +0.4
2,728,088 - CCNA_02576 0.22 -1.4
2,728,096 - CCNA_02576 0.23 +0.8
2,728,096 - CCNA_02576 0.23 -1.0
2,728,096 - CCNA_02576 0.23 -0.1
2,728,116 + CCNA_02576 0.26 +0.0
2,728,138 + CCNA_02576 0.29 +0.5

Or see this region's nucleotide sequence