Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02519 and CCNA_02520 overlap by 1 nucleotides CCNA_02520 and CCNA_02521 are separated by 179 nucleotides CCNA_02521 and CCNA_02522 are separated by 105 nucleotides CCNA_02522 and CCNA_02523 are separated by 234 nucleotides
CCNA_02519: CCNA_02519 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 2,669,181 to 2,670,650
_02519
CCNA_02520: CCNA_02520 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 2,670,650 to 2,670,937
_02520
CCNA_02521: CCNA_02521 - endonuclease involved in recombination, at 2,671,117 to 2,671,587
_02521
CCNA_02522: CCNA_02522 - hypothetical protein, at 2,671,693 to 2,672,145
_02522
CCNA_02523: CCNA_02523 - hypothetical protein, at 2,672,380 to 2,672,874
_02523
Position (kb)
2671
2672 Strain fitness (log2 ratio)
-2
-1
0
1 at 2671.007 kb on - strand at 2671.030 kb on + strand at 2671.030 kb on + strand at 2671.038 kb on - strand at 2671.038 kb on - strand at 2671.044 kb on - strand at 2671.046 kb on + strand at 2671.054 kb on - strand at 2671.058 kb on + strand at 2671.070 kb on + strand at 2671.089 kb on + strand at 2671.089 kb on + strand at 2671.096 kb on - strand at 2671.096 kb on - strand at 2671.103 kb on + strand at 2671.177 kb on + strand, within CCNA_02521 at 2671.207 kb on - strand, within CCNA_02521 at 2671.472 kb on + strand, within CCNA_02521 at 2671.551 kb on + strand at 2671.572 kb on + strand at 2671.583 kb on + strand at 2671.599 kb on + strand at 2671.634 kb on - strand at 2671.688 kb on - strand at 2671.690 kb on + strand at 2671.698 kb on + strand at 2671.698 kb on - strand at 2671.706 kb on - strand at 2671.748 kb on + strand, within CCNA_02522 at 2671.816 kb on - strand, within CCNA_02522 at 2671.816 kb on - strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.836 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.837 kb on + strand, within CCNA_02522 at 2671.839 kb on + strand, within CCNA_02522 at 2671.839 kb on + strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.845 kb on - strand, within CCNA_02522 at 2671.847 kb on - strand, within CCNA_02522 at 2671.852 kb on - strand, within CCNA_02522 at 2671.905 kb on - strand, within CCNA_02522 at 2671.996 kb on + strand, within CCNA_02522 at 2672.003 kb on - strand, within CCNA_02522 at 2672.003 kb on - strand, within CCNA_02522 at 2672.025 kb on - strand, within CCNA_02522 at 2672.030 kb on - strand, within CCNA_02522 at 2672.030 kb on - strand, within CCNA_02522 at 2672.053 kb on + strand, within CCNA_02522 at 2672.053 kb on + strand, within CCNA_02522 at 2672.123 kb on - strand at 2672.185 kb on - strand at 2672.223 kb on + strand at 2672.330 kb on - strand at 2672.333 kb on + strand at 2672.340 kb on + strand at 2672.348 kb on - strand at 2672.350 kb on + strand at 2672.358 kb on - strand at 2672.368 kb on - strand at 2672.391 kb on + strand at 2672.394 kb on + strand at 2672.438 kb on + strand, within CCNA_02523 at 2672.441 kb on - strand, within CCNA_02523 at 2672.484 kb on + strand, within CCNA_02523 at 2672.484 kb on + strand, within CCNA_02523 at 2672.484 kb on + strand, within CCNA_02523 at 2672.484 kb on + strand, within CCNA_02523 at 2672.487 kb on - strand, within CCNA_02523
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,671,007 - -1.7 2,671,030 + -1.5 2,671,030 + -1.6 2,671,038 - +0.8 2,671,038 - -0.7 2,671,044 - +0.6 2,671,046 + -1.0 2,671,054 - -0.4 2,671,058 + -2.4 2,671,070 + -0.2 2,671,089 + -0.6 2,671,089 + +1.2 2,671,096 - +0.0 2,671,096 - -0.1 2,671,103 + -0.1 2,671,177 + CCNA_02521 0.13 -0.1 2,671,207 - CCNA_02521 0.19 -0.2 2,671,472 + CCNA_02521 0.75 -0.4 2,671,551 + -2.3 2,671,572 + +1.0 2,671,583 + +0.0 2,671,599 + -0.9 2,671,634 - +0.9 2,671,688 - +0.4 2,671,690 + -0.7 2,671,698 + +0.4 2,671,698 - -1.5 2,671,706 - -1.7 2,671,748 + CCNA_02522 0.12 -2.1 2,671,816 - CCNA_02522 0.27 -0.0 2,671,816 - CCNA_02522 0.27 -0.2 2,671,836 + CCNA_02522 0.32 +0.5 2,671,836 + CCNA_02522 0.32 +0.7 2,671,836 + CCNA_02522 0.32 +1.1 2,671,837 + CCNA_02522 0.32 -0.6 2,671,837 + CCNA_02522 0.32 +0.2 2,671,837 + CCNA_02522 0.32 +0.3 2,671,837 + CCNA_02522 0.32 -0.2 2,671,837 + CCNA_02522 0.32 -0.9 2,671,837 + CCNA_02522 0.32 +0.4 2,671,837 + CCNA_02522 0.32 +0.7 2,671,839 + CCNA_02522 0.32 +0.3 2,671,839 + CCNA_02522 0.32 -2.4 2,671,845 - CCNA_02522 0.34 +0.1 2,671,845 - CCNA_02522 0.34 +0.1 2,671,845 - CCNA_02522 0.34 -1.3 2,671,845 - CCNA_02522 0.34 -0.3 2,671,847 - CCNA_02522 0.34 -0.3 2,671,852 - CCNA_02522 0.35 -1.7 2,671,905 - CCNA_02522 0.47 +0.4 2,671,996 + CCNA_02522 0.67 -0.4 2,672,003 - CCNA_02522 0.68 -1.7 2,672,003 - CCNA_02522 0.68 -0.7 2,672,025 - CCNA_02522 0.73 -0.1 2,672,030 - CCNA_02522 0.74 +0.1 2,672,030 - CCNA_02522 0.74 -1.1 2,672,053 + CCNA_02522 0.79 +0.1 2,672,053 + CCNA_02522 0.79 -0.4 2,672,123 - +0.6 2,672,185 - -1.2 2,672,223 + +0.3 2,672,330 - -0.1 2,672,333 + +1.6 2,672,340 + +0.2 2,672,348 - -1.3 2,672,350 + +1.4 2,672,358 - +0.1 2,672,368 - -0.1 2,672,391 + -0.7 2,672,394 + +0.3 2,672,438 + CCNA_02523 0.12 -0.1 2,672,441 - CCNA_02523 0.12 -1.4 2,672,484 + CCNA_02523 0.21 -0.4 2,672,484 + CCNA_02523 0.21 +0.5 2,672,484 + CCNA_02523 0.21 +0.1 2,672,484 + CCNA_02523 0.21 +0.0 2,672,487 - CCNA_02523 0.22 -0.0
Or see this region's nucleotide sequence