Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02421

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02419 and CCNA_02420 are separated by 10 nucleotidesCCNA_02420 and CCNA_02421 are separated by 5 nucleotidesCCNA_02421 and CCNA_02422 are separated by 913 nucleotides CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281 _02419 CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726 _02420 CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640 _02421 CCNA_02422: CCNA_02422 - short chain dehydrogenase, at 2,566,554 to 2,567,381 _02422 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -2 -1 0 1at 2563.798 kb on - strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.802 kb on + strand, within CCNA_02419at 2563.837 kb on - strand, within CCNA_02419at 2563.846 kb on - strand, within CCNA_02419at 2563.999 kb on - strand, within CCNA_02419at 2564.081 kb on + strand, within CCNA_02419at 2564.360 kb on + strand, within CCNA_02420at 2564.499 kb on - strand, within CCNA_02420at 2564.771 kb on - strandat 2564.984 kb on - strand, within CCNA_02421at 2565.033 kb on - strand, within CCNA_02421at 2565.045 kb on + strand, within CCNA_02421at 2565.067 kb on - strand, within CCNA_02421at 2565.195 kb on + strand, within CCNA_02421at 2565.374 kb on - strand, within CCNA_02421at 2565.596 kb on + strandat 2565.711 kb on + strandat 2565.733 kb on + strandat 2565.920 kb on + strandat 2566.089 kb on - strandat 2566.187 kb on + strandat 2566.207 kb on + strandat 2566.237 kb on - strandat 2566.237 kb on - strandat 2566.260 kb on - strandat 2566.323 kb on + strandat 2566.323 kb on + strandat 2566.331 kb on - strandat 2566.349 kb on + strandat 2566.381 kb on - strandat 2566.381 kb on - strandat 2566.440 kb on - strandat 2566.524 kb on + strandat 2566.560 kb on + strandat 2566.568 kb on - strandat 2566.573 kb on - strandat 2566.606 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,563,798 - CCNA_02419 0.34 +0.1
2,563,802 + CCNA_02419 0.34 +0.1
2,563,802 + CCNA_02419 0.34 -1.3
2,563,837 - CCNA_02419 0.39 +0.1
2,563,846 - CCNA_02419 0.40 +0.7
2,563,999 - CCNA_02419 0.61 +0.5
2,564,081 + CCNA_02419 0.73 +0.2
2,564,360 + CCNA_02420 0.16 +0.3
2,564,499 - CCNA_02420 0.48 +1.5
2,564,771 - +0.4
2,564,984 - CCNA_02421 0.28 -0.2
2,565,033 - CCNA_02421 0.33 +0.5
2,565,045 + CCNA_02421 0.34 -2.3
2,565,067 - CCNA_02421 0.37 -0.7
2,565,195 + CCNA_02421 0.51 -0.9
2,565,374 - CCNA_02421 0.71 -2.1
2,565,596 + -1.2
2,565,711 + -0.1
2,565,733 + +0.6
2,565,920 + +0.7
2,566,089 - -0.1
2,566,187 + +1.2
2,566,207 + -0.3
2,566,237 - +1.6
2,566,237 - +0.5
2,566,260 - -0.1
2,566,323 + -1.7
2,566,323 + +0.3
2,566,331 - +0.1
2,566,349 + -0.2
2,566,381 - -0.2
2,566,381 - +1.1
2,566,440 - -1.7
2,566,524 + +0.1
2,566,560 + -0.7
2,566,568 - -2.1
2,566,573 - -0.1
2,566,606 - +0.7

Or see this region's nucleotide sequence