Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02421
Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with CHIR-090 10 ug/mL |
---|---|---|---|---|---|
remove | |||||
2,563,798 | - | CCNA_02419 | 0.34 | +0.1 | |
2,563,802 | + | CCNA_02419 | 0.34 | +0.1 | |
2,563,802 | + | CCNA_02419 | 0.34 | -1.3 | |
2,563,837 | - | CCNA_02419 | 0.39 | +0.1 | |
2,563,846 | - | CCNA_02419 | 0.40 | +0.7 | |
2,563,999 | - | CCNA_02419 | 0.61 | +0.5 | |
2,564,081 | + | CCNA_02419 | 0.73 | +0.2 | |
2,564,360 | + | CCNA_02420 | 0.16 | +0.3 | |
2,564,499 | - | CCNA_02420 | 0.48 | +1.5 | |
2,564,771 | - | +0.4 | |||
2,564,984 | - | CCNA_02421 | 0.28 | -0.2 | |
2,565,033 | - | CCNA_02421 | 0.33 | +0.5 | |
2,565,045 | + | CCNA_02421 | 0.34 | -2.3 | |
2,565,067 | - | CCNA_02421 | 0.37 | -0.7 | |
2,565,195 | + | CCNA_02421 | 0.51 | -0.9 | |
2,565,374 | - | CCNA_02421 | 0.71 | -2.1 | |
2,565,596 | + | -1.2 | |||
2,565,711 | + | -0.1 | |||
2,565,733 | + | +0.6 | |||
2,565,920 | + | +0.7 | |||
2,566,089 | - | -0.1 | |||
2,566,187 | + | +1.2 | |||
2,566,207 | + | -0.3 | |||
2,566,237 | - | +1.6 | |||
2,566,237 | - | +0.5 | |||
2,566,260 | - | -0.1 | |||
2,566,323 | + | -1.7 | |||
2,566,323 | + | +0.3 | |||
2,566,331 | - | +0.1 | |||
2,566,349 | + | -0.2 | |||
2,566,381 | - | -0.2 | |||
2,566,381 | - | +1.1 | |||
2,566,440 | - | -1.7 | |||
2,566,524 | + | +0.1 | |||
2,566,560 | + | -0.7 | |||
2,566,568 | - | -2.1 | |||
2,566,573 | - | -0.1 | |||
2,566,606 | - | +0.7 |
Or see this region's nucleotide sequence