Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02366 and CCNA_02367 are separated by 246 nucleotides CCNA_02367 and CCNA_02368 overlap by 4 nucleotides
CCNA_02366: CCNA_02366 - cytoplasmic membrane maltose transporter malY, at 2,507,554 to 2,509,065
_02366
CCNA_02367: CCNA_02367 - CelR-family transcriptional regulator, at 2,509,312 to 2,510,400
_02367
CCNA_02368: CCNA_02368 - alpha-glucosidase, at 2,510,397 to 2,512,040
_02368
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2508.383 kb on - strand, within CCNA_02366 at 2508.384 kb on + strand, within CCNA_02366 at 2508.441 kb on + strand, within CCNA_02366 at 2508.449 kb on - strand, within CCNA_02366 at 2508.453 kb on + strand, within CCNA_02366 at 2508.463 kb on + strand, within CCNA_02366 at 2508.463 kb on + strand, within CCNA_02366 at 2508.463 kb on + strand, within CCNA_02366 at 2508.471 kb on - strand, within CCNA_02366 at 2508.471 kb on - strand, within CCNA_02366 at 2508.473 kb on + strand, within CCNA_02366 at 2508.473 kb on + strand, within CCNA_02366 at 2508.473 kb on + strand, within CCNA_02366 at 2508.475 kb on + strand, within CCNA_02366 at 2508.481 kb on + strand, within CCNA_02366 at 2508.481 kb on - strand, within CCNA_02366 at 2508.481 kb on - strand, within CCNA_02366 at 2508.481 kb on - strand, within CCNA_02366 at 2508.481 kb on - strand, within CCNA_02366 at 2508.532 kb on + strand, within CCNA_02366 at 2508.540 kb on - strand, within CCNA_02366 at 2508.540 kb on - strand, within CCNA_02366 at 2508.562 kb on + strand, within CCNA_02366 at 2508.565 kb on - strand, within CCNA_02366 at 2508.592 kb on + strand, within CCNA_02366 at 2508.595 kb on - strand, within CCNA_02366 at 2508.634 kb on + strand, within CCNA_02366 at 2508.637 kb on + strand, within CCNA_02366 at 2508.702 kb on + strand, within CCNA_02366 at 2508.702 kb on + strand, within CCNA_02366 at 2508.715 kb on + strand, within CCNA_02366 at 2508.729 kb on + strand, within CCNA_02366 at 2508.762 kb on + strand, within CCNA_02366 at 2508.770 kb on - strand, within CCNA_02366 at 2508.789 kb on - strand, within CCNA_02366 at 2508.790 kb on + strand, within CCNA_02366 at 2508.790 kb on + strand, within CCNA_02366 at 2508.856 kb on - strand, within CCNA_02366 at 2508.883 kb on - strand, within CCNA_02366 at 2508.896 kb on + strand, within CCNA_02366 at 2508.947 kb on - strand at 2509.043 kb on + strand at 2509.382 kb on + strand at 2509.390 kb on - strand at 2509.392 kb on + strand at 2509.400 kb on - strand at 2509.465 kb on + strand, within CCNA_02367 at 2509.536 kb on - strand, within CCNA_02367 at 2509.538 kb on - strand, within CCNA_02367 at 2509.571 kb on + strand, within CCNA_02367 at 2509.571 kb on + strand, within CCNA_02367 at 2509.607 kb on + strand, within CCNA_02367 at 2509.625 kb on - strand, within CCNA_02367 at 2509.643 kb on + strand, within CCNA_02367 at 2509.694 kb on + strand, within CCNA_02367 at 2509.704 kb on + strand, within CCNA_02367 at 2509.737 kb on + strand, within CCNA_02367 at 2509.737 kb on + strand, within CCNA_02367 at 2509.745 kb on - strand, within CCNA_02367 at 2509.745 kb on - strand, within CCNA_02367 at 2509.842 kb on + strand, within CCNA_02367 at 2509.842 kb on + strand, within CCNA_02367 at 2509.842 kb on + strand, within CCNA_02367 at 2509.842 kb on + strand, within CCNA_02367 at 2509.859 kb on + strand, within CCNA_02367 at 2509.864 kb on + strand, within CCNA_02367 at 2509.885 kb on + strand, within CCNA_02367 at 2509.904 kb on - strand, within CCNA_02367 at 2509.967 kb on + strand, within CCNA_02367 at 2509.977 kb on + strand, within CCNA_02367 at 2509.982 kb on + strand, within CCNA_02367 at 2510.050 kb on - strand, within CCNA_02367 at 2510.050 kb on - strand, within CCNA_02367 at 2510.055 kb on - strand, within CCNA_02367 at 2510.144 kb on + strand, within CCNA_02367 at 2510.152 kb on - strand, within CCNA_02367 at 2510.161 kb on - strand, within CCNA_02367 at 2510.200 kb on + strand, within CCNA_02367 at 2510.218 kb on + strand, within CCNA_02367 at 2510.233 kb on - strand, within CCNA_02367 at 2510.239 kb on + strand, within CCNA_02367 at 2510.260 kb on - strand, within CCNA_02367 at 2510.266 kb on - strand, within CCNA_02367 at 2510.286 kb on - strand, within CCNA_02367 at 2510.291 kb on - strand, within CCNA_02367 at 2510.320 kb on - strand at 2510.349 kb on + strand at 2510.357 kb on - strand at 2510.368 kb on + strand at 2510.403 kb on - strand at 2510.425 kb on - strand at 2510.425 kb on - strand at 2510.446 kb on - strand at 2510.453 kb on + strand at 2510.461 kb on - strand at 2510.641 kb on - strand, within CCNA_02368 at 2510.661 kb on - strand, within CCNA_02368 at 2510.672 kb on + strand, within CCNA_02368 at 2510.708 kb on - strand, within CCNA_02368 at 2510.730 kb on + strand, within CCNA_02368 at 2510.733 kb on + strand, within CCNA_02368 at 2510.764 kb on + strand, within CCNA_02368 at 2510.764 kb on + strand, within CCNA_02368 at 2510.791 kb on - strand, within CCNA_02368 at 2510.808 kb on + strand, within CCNA_02368 at 2510.816 kb on - strand, within CCNA_02368 at 2510.816 kb on - strand, within CCNA_02368 at 2510.818 kb on - strand, within CCNA_02368 at 2510.873 kb on - strand, within CCNA_02368 at 2510.874 kb on - strand, within CCNA_02368 at 2510.943 kb on - strand, within CCNA_02368 at 2510.979 kb on + strand, within CCNA_02368 at 2510.987 kb on - strand, within CCNA_02368 at 2511.015 kb on + strand, within CCNA_02368 at 2511.015 kb on + strand, within CCNA_02368 at 2511.024 kb on - strand, within CCNA_02368 at 2511.025 kb on + strand, within CCNA_02368 at 2511.038 kb on - strand, within CCNA_02368 at 2511.114 kb on + strand, within CCNA_02368 at 2511.114 kb on + strand, within CCNA_02368 at 2511.126 kb on + strand, within CCNA_02368 at 2511.126 kb on + strand, within CCNA_02368 at 2511.129 kb on - strand, within CCNA_02368 at 2511.153 kb on - strand, within CCNA_02368 at 2511.225 kb on - strand, within CCNA_02368 at 2511.267 kb on + strand, within CCNA_02368 at 2511.335 kb on + strand, within CCNA_02368 at 2511.337 kb on + strand, within CCNA_02368 at 2511.347 kb on + strand, within CCNA_02368 at 2511.347 kb on + strand, within CCNA_02368 at 2511.347 kb on + strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.355 kb on - strand, within CCNA_02368 at 2511.362 kb on - strand, within CCNA_02368 at 2511.362 kb on - strand, within CCNA_02368 at 2511.376 kb on + strand, within CCNA_02368
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,508,383 - CCNA_02366 0.55 -1.0 2,508,384 + CCNA_02366 0.55 +0.4 2,508,441 + CCNA_02366 0.59 +1.0 2,508,449 - CCNA_02366 0.59 -2.2 2,508,453 + CCNA_02366 0.59 -0.0 2,508,463 + CCNA_02366 0.60 +0.1 2,508,463 + CCNA_02366 0.60 -0.3 2,508,463 + CCNA_02366 0.60 +2.1 2,508,471 - CCNA_02366 0.61 -1.0 2,508,471 - CCNA_02366 0.61 -0.9 2,508,473 + CCNA_02366 0.61 -0.1 2,508,473 + CCNA_02366 0.61 +0.2 2,508,473 + CCNA_02366 0.61 +1.3 2,508,475 + CCNA_02366 0.61 -1.1 2,508,481 + CCNA_02366 0.61 -0.3 2,508,481 - CCNA_02366 0.61 -1.2 2,508,481 - CCNA_02366 0.61 +0.6 2,508,481 - CCNA_02366 0.61 -0.1 2,508,481 - CCNA_02366 0.61 -0.7 2,508,532 + CCNA_02366 0.65 -1.0 2,508,540 - CCNA_02366 0.65 +1.0 2,508,540 - CCNA_02366 0.65 +0.1 2,508,562 + CCNA_02366 0.67 +0.5 2,508,565 - CCNA_02366 0.67 -0.5 2,508,592 + CCNA_02366 0.69 +1.4 2,508,595 - CCNA_02366 0.69 +0.2 2,508,634 + CCNA_02366 0.71 -0.4 2,508,637 + CCNA_02366 0.72 -0.6 2,508,702 + CCNA_02366 0.76 -0.5 2,508,702 + CCNA_02366 0.76 +1.1 2,508,715 + CCNA_02366 0.77 +1.6 2,508,729 + CCNA_02366 0.78 +1.5 2,508,762 + CCNA_02366 0.80 -1.5 2,508,770 - CCNA_02366 0.80 +1.9 2,508,789 - CCNA_02366 0.82 -1.4 2,508,790 + CCNA_02366 0.82 -0.7 2,508,790 + CCNA_02366 0.82 -0.7 2,508,856 - CCNA_02366 0.86 +0.3 2,508,883 - CCNA_02366 0.88 +0.3 2,508,896 + CCNA_02366 0.89 +0.3 2,508,947 - -0.5 2,509,043 + +3.2 2,509,382 + +0.1 2,509,390 - +1.0 2,509,392 + +0.2 2,509,400 - -1.0 2,509,465 + CCNA_02367 0.14 +1.0 2,509,536 - CCNA_02367 0.21 +0.9 2,509,538 - CCNA_02367 0.21 +1.9 2,509,571 + CCNA_02367 0.24 +0.3 2,509,571 + CCNA_02367 0.24 +0.5 2,509,607 + CCNA_02367 0.27 +0.5 2,509,625 - CCNA_02367 0.29 +0.1 2,509,643 + CCNA_02367 0.30 +0.5 2,509,694 + CCNA_02367 0.35 +1.0 2,509,704 + CCNA_02367 0.36 -0.1 2,509,737 + CCNA_02367 0.39 +0.9 2,509,737 + CCNA_02367 0.39 +0.7 2,509,745 - CCNA_02367 0.40 +0.6 2,509,745 - CCNA_02367 0.40 +0.4 2,509,842 + CCNA_02367 0.49 +0.5 2,509,842 + CCNA_02367 0.49 -1.0 2,509,842 + CCNA_02367 0.49 +0.0 2,509,842 + CCNA_02367 0.49 +1.2 2,509,859 + CCNA_02367 0.50 +1.9 2,509,864 + CCNA_02367 0.51 -0.2 2,509,885 + CCNA_02367 0.53 +1.1 2,509,904 - CCNA_02367 0.54 -0.5 2,509,967 + CCNA_02367 0.60 +0.8 2,509,977 + CCNA_02367 0.61 -0.5 2,509,982 + CCNA_02367 0.62 -0.4 2,510,050 - CCNA_02367 0.68 +0.6 2,510,050 - CCNA_02367 0.68 +0.5 2,510,055 - CCNA_02367 0.68 +0.1 2,510,144 + CCNA_02367 0.76 -0.0 2,510,152 - CCNA_02367 0.77 -0.5 2,510,161 - CCNA_02367 0.78 -0.5 2,510,200 + CCNA_02367 0.82 -1.1 2,510,218 + CCNA_02367 0.83 +2.4 2,510,233 - CCNA_02367 0.85 +0.7 2,510,239 + CCNA_02367 0.85 +1.7 2,510,260 - CCNA_02367 0.87 +0.4 2,510,266 - CCNA_02367 0.88 +0.9 2,510,286 - CCNA_02367 0.89 +0.6 2,510,291 - CCNA_02367 0.90 +0.6 2,510,320 - -0.2 2,510,349 + -1.1 2,510,357 - +0.6 2,510,368 + +1.6 2,510,403 - -0.5 2,510,425 - +1.2 2,510,425 - +1.0 2,510,446 - +0.6 2,510,453 + +1.9 2,510,461 - +0.9 2,510,641 - CCNA_02368 0.15 +1.0 2,510,661 - CCNA_02368 0.16 +1.4 2,510,672 + CCNA_02368 0.17 -2.6 2,510,708 - CCNA_02368 0.19 -0.0 2,510,730 + CCNA_02368 0.20 -2.1 2,510,733 + CCNA_02368 0.20 +0.1 2,510,764 + CCNA_02368 0.22 +0.8 2,510,764 + CCNA_02368 0.22 -1.0 2,510,791 - CCNA_02368 0.24 -0.3 2,510,808 + CCNA_02368 0.25 +0.2 2,510,816 - CCNA_02368 0.25 -0.0 2,510,816 - CCNA_02368 0.25 +0.4 2,510,818 - CCNA_02368 0.26 +0.3 2,510,873 - CCNA_02368 0.29 +0.3 2,510,874 - CCNA_02368 0.29 -1.2 2,510,943 - CCNA_02368 0.33 -1.4 2,510,979 + CCNA_02368 0.35 -2.2 2,510,987 - CCNA_02368 0.36 -0.9 2,511,015 + CCNA_02368 0.38 -1.5 2,511,015 + CCNA_02368 0.38 -0.7 2,511,024 - CCNA_02368 0.38 -0.4 2,511,025 + CCNA_02368 0.38 +1.1 2,511,038 - CCNA_02368 0.39 +0.4 2,511,114 + CCNA_02368 0.44 +0.4 2,511,114 + CCNA_02368 0.44 +0.6 2,511,126 + CCNA_02368 0.44 -0.7 2,511,126 + CCNA_02368 0.44 +1.9 2,511,129 - CCNA_02368 0.45 -0.8 2,511,153 - CCNA_02368 0.46 -0.1 2,511,225 - CCNA_02368 0.50 +2.4 2,511,267 + CCNA_02368 0.53 -1.1 2,511,335 + CCNA_02368 0.57 -0.2 2,511,337 + CCNA_02368 0.57 -2.2 2,511,347 + CCNA_02368 0.58 -0.9 2,511,347 + CCNA_02368 0.58 -2.2 2,511,347 + CCNA_02368 0.58 -1.2 2,511,355 - CCNA_02368 0.58 +0.8 2,511,355 - CCNA_02368 0.58 +0.2 2,511,355 - CCNA_02368 0.58 -0.4 2,511,355 - CCNA_02368 0.58 +0.5 2,511,362 - CCNA_02368 0.59 +0.3 2,511,362 - CCNA_02368 0.59 +0.1 2,511,376 + CCNA_02368 0.60 -2.4
Or see this region's nucleotide sequence