Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02335 and CCNA_02336 overlap by 26 nucleotides CCNA_02336 and CCNA_02337 are separated by 3 nucleotides CCNA_02337 and CCNA_02338 are separated by 88 nucleotides CCNA_02338 and CCNA_02339 overlap by 4 nucleotides
CCNA_02335: CCNA_02335 - inositol monophosphatase family protein, at 2,475,998 to 2,476,834
_02335
CCNA_02336: CCNA_02336 - lysophospholipase L2, at 2,476,809 to 2,477,789
_02336
CCNA_02337: CCNA_02337 - nonspecific lipid-transfer protein, at 2,477,793 to 2,478,101
_02337
CCNA_02338: CCNA_02338 - hypothetical protein, at 2,478,190 to 2,478,867
_02338
CCNA_02339: CCNA_02339 - methyltransferase, at 2,478,864 to 2,479,760
_02339
Position (kb)
2477
2478
2479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2476.820 kb on - strand at 2476.887 kb on - strand at 2476.887 kb on - strand at 2476.938 kb on - strand, within CCNA_02336 at 2477.004 kb on + strand, within CCNA_02336 at 2477.010 kb on - strand, within CCNA_02336 at 2477.054 kb on - strand, within CCNA_02336 at 2477.106 kb on + strand, within CCNA_02336 at 2477.129 kb on - strand, within CCNA_02336 at 2477.131 kb on + strand, within CCNA_02336 at 2477.187 kb on + strand, within CCNA_02336 at 2477.209 kb on + strand, within CCNA_02336 at 2477.217 kb on - strand, within CCNA_02336 at 2477.217 kb on - strand, within CCNA_02336 at 2477.285 kb on - strand, within CCNA_02336 at 2477.286 kb on - strand, within CCNA_02336 at 2477.316 kb on + strand, within CCNA_02336 at 2477.368 kb on + strand, within CCNA_02336 at 2477.370 kb on - strand, within CCNA_02336 at 2477.374 kb on + strand, within CCNA_02336 at 2477.379 kb on + strand, within CCNA_02336 at 2477.380 kb on - strand, within CCNA_02336 at 2477.380 kb on - strand, within CCNA_02336 at 2477.427 kb on + strand, within CCNA_02336 at 2477.457 kb on + strand, within CCNA_02336 at 2477.540 kb on + strand, within CCNA_02336 at 2477.540 kb on + strand, within CCNA_02336 at 2477.540 kb on + strand, within CCNA_02336 at 2477.541 kb on + strand, within CCNA_02336 at 2477.548 kb on - strand, within CCNA_02336 at 2477.638 kb on + strand, within CCNA_02336 at 2477.650 kb on + strand, within CCNA_02336 at 2477.658 kb on - strand, within CCNA_02336 at 2477.696 kb on + strand at 2477.736 kb on - strand at 2477.821 kb on + strand at 2477.821 kb on + strand at 2477.823 kb on - strand at 2477.829 kb on - strand, within CCNA_02337 at 2478.039 kb on - strand, within CCNA_02337 at 2478.102 kb on + strand at 2478.179 kb on - strand at 2478.184 kb on - strand at 2478.215 kb on + strand at 2478.237 kb on + strand at 2478.237 kb on + strand at 2478.245 kb on - strand at 2478.245 kb on - strand at 2478.245 kb on - strand at 2478.245 kb on - strand at 2478.269 kb on + strand, within CCNA_02338 at 2478.277 kb on - strand, within CCNA_02338 at 2478.277 kb on - strand, within CCNA_02338 at 2478.277 kb on - strand, within CCNA_02338 at 2478.277 kb on - strand, within CCNA_02338 at 2478.306 kb on - strand, within CCNA_02338 at 2478.330 kb on - strand, within CCNA_02338 at 2478.373 kb on + strand, within CCNA_02338 at 2478.495 kb on + strand, within CCNA_02338 at 2478.495 kb on + strand, within CCNA_02338 at 2478.536 kb on + strand, within CCNA_02338 at 2478.542 kb on + strand, within CCNA_02338 at 2478.542 kb on + strand, within CCNA_02338 at 2478.550 kb on - strand, within CCNA_02338 at 2478.608 kb on + strand, within CCNA_02338 at 2478.656 kb on - strand, within CCNA_02338 at 2478.659 kb on + strand, within CCNA_02338 at 2478.698 kb on - strand, within CCNA_02338 at 2478.712 kb on + strand, within CCNA_02338 at 2478.712 kb on + strand, within CCNA_02338 at 2478.720 kb on - strand, within CCNA_02338 at 2478.720 kb on - strand, within CCNA_02338 at 2478.773 kb on + strand, within CCNA_02338 at 2478.781 kb on - strand, within CCNA_02338 at 2478.819 kb on + strand at 2478.838 kb on - strand at 2478.859 kb on - strand at 2478.919 kb on + strand at 2478.972 kb on - strand, within CCNA_02339 at 2478.972 kb on - strand, within CCNA_02339 at 2478.987 kb on + strand, within CCNA_02339 at 2478.995 kb on - strand, within CCNA_02339 at 2479.063 kb on - strand, within CCNA_02339 at 2479.063 kb on - strand, within CCNA_02339 at 2479.087 kb on + strand, within CCNA_02339 at 2479.087 kb on + strand, within CCNA_02339 at 2479.087 kb on + strand, within CCNA_02339 at 2479.095 kb on - strand, within CCNA_02339 at 2479.101 kb on + strand, within CCNA_02339
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,476,820 - +0.4 2,476,887 - -0.3 2,476,887 - -0.7 2,476,938 - CCNA_02336 0.13 -0.9 2,477,004 + CCNA_02336 0.20 -0.4 2,477,010 - CCNA_02336 0.20 +1.0 2,477,054 - CCNA_02336 0.25 -0.6 2,477,106 + CCNA_02336 0.30 -0.0 2,477,129 - CCNA_02336 0.33 +0.4 2,477,131 + CCNA_02336 0.33 +0.4 2,477,187 + CCNA_02336 0.39 -1.3 2,477,209 + CCNA_02336 0.41 -1.0 2,477,217 - CCNA_02336 0.42 +1.0 2,477,217 - CCNA_02336 0.42 +0.4 2,477,285 - CCNA_02336 0.49 +0.0 2,477,286 - CCNA_02336 0.49 +0.4 2,477,316 + CCNA_02336 0.52 -1.5 2,477,368 + CCNA_02336 0.57 +0.8 2,477,370 - CCNA_02336 0.57 +0.7 2,477,374 + CCNA_02336 0.58 +1.2 2,477,379 + CCNA_02336 0.58 -0.6 2,477,380 - CCNA_02336 0.58 +0.2 2,477,380 - CCNA_02336 0.58 -0.2 2,477,427 + CCNA_02336 0.63 +0.1 2,477,457 + CCNA_02336 0.66 -1.1 2,477,540 + CCNA_02336 0.75 +0.8 2,477,540 + CCNA_02336 0.75 +1.0 2,477,540 + CCNA_02336 0.75 +0.5 2,477,541 + CCNA_02336 0.75 +1.4 2,477,548 - CCNA_02336 0.75 -0.8 2,477,638 + CCNA_02336 0.85 +1.1 2,477,650 + CCNA_02336 0.86 +0.4 2,477,658 - CCNA_02336 0.87 +1.2 2,477,696 + -0.9 2,477,736 - +0.3 2,477,821 + -0.2 2,477,821 + -0.2 2,477,823 - +0.2 2,477,829 - CCNA_02337 0.12 +1.0 2,478,039 - CCNA_02337 0.80 +0.1 2,478,102 + -0.5 2,478,179 - +1.0 2,478,184 - +0.2 2,478,215 + -0.2 2,478,237 + -1.5 2,478,237 + -0.5 2,478,245 - +0.6 2,478,245 - +1.3 2,478,245 - +0.6 2,478,245 - +0.7 2,478,269 + CCNA_02338 0.12 +0.7 2,478,277 - CCNA_02338 0.13 -0.1 2,478,277 - CCNA_02338 0.13 +0.4 2,478,277 - CCNA_02338 0.13 +0.9 2,478,277 - CCNA_02338 0.13 +0.7 2,478,306 - CCNA_02338 0.17 -0.1 2,478,330 - CCNA_02338 0.21 -0.0 2,478,373 + CCNA_02338 0.27 -0.8 2,478,495 + CCNA_02338 0.45 +0.0 2,478,495 + CCNA_02338 0.45 -1.3 2,478,536 + CCNA_02338 0.51 -0.6 2,478,542 + CCNA_02338 0.52 +0.2 2,478,542 + CCNA_02338 0.52 -3.2 2,478,550 - CCNA_02338 0.53 +0.6 2,478,608 + CCNA_02338 0.62 +1.3 2,478,656 - CCNA_02338 0.69 +0.2 2,478,659 + CCNA_02338 0.69 +0.9 2,478,698 - CCNA_02338 0.75 +2.0 2,478,712 + CCNA_02338 0.77 -0.1 2,478,712 + CCNA_02338 0.77 +0.0 2,478,720 - CCNA_02338 0.78 -0.0 2,478,720 - CCNA_02338 0.78 +0.1 2,478,773 + CCNA_02338 0.86 -2.6 2,478,781 - CCNA_02338 0.87 -0.7 2,478,819 + +0.3 2,478,838 - -0.8 2,478,859 - -0.5 2,478,919 + +0.1 2,478,972 - CCNA_02339 0.12 +0.8 2,478,972 - CCNA_02339 0.12 +0.9 2,478,987 + CCNA_02339 0.14 +0.2 2,478,995 - CCNA_02339 0.15 +0.9 2,479,063 - CCNA_02339 0.22 +0.3 2,479,063 - CCNA_02339 0.22 +0.3 2,479,087 + CCNA_02339 0.25 +0.2 2,479,087 + CCNA_02339 0.25 +0.1 2,479,087 + CCNA_02339 0.25 +0.6 2,479,095 - CCNA_02339 0.26 +0.1 2,479,101 + CCNA_02339 0.26 -1.9
Or see this region's nucleotide sequence