Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02326

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02325 and CCNA_02326 are separated by 117 nucleotidesCCNA_02326 and CCNA_02327 are separated by 154 nucleotides CCNA_02325: CCNA_02325 - ornithine carbamoyltransferase, at 2,466,949 to 2,467,884 _02325 CCNA_02326: CCNA_02326 - acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase, at 2,468,002 to 2,469,219 _02326 CCNA_02327: CCNA_02327 - ABC transporter permease protein, at 2,469,374 to 2,470,195 _02327 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -2 -1 0 1 2at 2467.047 kb on - strand, within CCNA_02325at 2467.732 kb on - strand, within CCNA_02325at 2467.749 kb on - strand, within CCNA_02325at 2467.841 kb on - strandat 2467.856 kb on - strandat 2467.924 kb on + strandat 2467.938 kb on + strandat 2467.958 kb on - strandat 2467.958 kb on - strandat 2467.959 kb on - strandat 2468.012 kb on + strandat 2468.118 kb on - strandat 2468.192 kb on - strand, within CCNA_02326at 2468.353 kb on - strand, within CCNA_02326at 2468.432 kb on - strand, within CCNA_02326at 2468.637 kb on - strand, within CCNA_02326at 2468.972 kb on - strand, within CCNA_02326at 2468.998 kb on - strand, within CCNA_02326at 2469.053 kb on + strand, within CCNA_02326at 2469.202 kb on - strandat 2469.222 kb on - strandat 2469.380 kb on - strandat 2469.406 kb on + strandat 2469.495 kb on + strand, within CCNA_02327at 2469.499 kb on + strand, within CCNA_02327at 2469.501 kb on - strand, within CCNA_02327at 2469.517 kb on + strand, within CCNA_02327at 2469.536 kb on - strand, within CCNA_02327at 2469.577 kb on + strand, within CCNA_02327at 2469.585 kb on - strand, within CCNA_02327at 2469.585 kb on - strand, within CCNA_02327at 2469.585 kb on - strand, within CCNA_02327at 2469.585 kb on - strand, within CCNA_02327at 2469.630 kb on + strand, within CCNA_02327at 2469.638 kb on - strand, within CCNA_02327at 2469.638 kb on - strand, within CCNA_02327at 2469.719 kb on - strand, within CCNA_02327at 2469.719 kb on - strand, within CCNA_02327at 2469.723 kb on + strand, within CCNA_02327at 2469.723 kb on + strand, within CCNA_02327at 2469.723 kb on + strand, within CCNA_02327at 2469.723 kb on + strand, within CCNA_02327at 2469.723 kb on + strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.731 kb on - strand, within CCNA_02327at 2469.786 kb on - strand, within CCNA_02327at 2469.793 kb on + strand, within CCNA_02327at 2469.801 kb on - strand, within CCNA_02327at 2469.810 kb on + strand, within CCNA_02327at 2469.827 kb on + strand, within CCNA_02327at 2469.828 kb on + strand, within CCNA_02327at 2469.828 kb on + strand, within CCNA_02327at 2469.828 kb on + strand, within CCNA_02327at 2469.861 kb on + strand, within CCNA_02327at 2469.907 kb on - strand, within CCNA_02327at 2469.945 kb on + strand, within CCNA_02327at 2469.953 kb on - strand, within CCNA_02327at 2469.963 kb on - strand, within CCNA_02327at 2469.979 kb on + strand, within CCNA_02327at 2469.988 kb on - strand, within CCNA_02327at 2469.997 kb on - strand, within CCNA_02327at 2469.997 kb on - strand, within CCNA_02327at 2470.023 kb on + strand, within CCNA_02327at 2470.043 kb on - strand, within CCNA_02327at 2470.055 kb on - strand, within CCNA_02327at 2470.107 kb on + strand, within CCNA_02327at 2470.115 kb on - strandat 2470.151 kb on + strandat 2470.158 kb on - strandat 2470.196 kb on - strandat 2470.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,467,047 - CCNA_02325 0.10 -0.9
2,467,732 - CCNA_02325 0.84 -0.7
2,467,749 - CCNA_02325 0.85 -1.7
2,467,841 - -1.0
2,467,856 - +0.6
2,467,924 + +0.2
2,467,938 + +0.6
2,467,958 - +0.2
2,467,958 - -0.3
2,467,959 - +1.4
2,468,012 + -0.6
2,468,118 - +0.6
2,468,192 - CCNA_02326 0.16 +0.3
2,468,353 - CCNA_02326 0.29 +0.3
2,468,432 - CCNA_02326 0.35 -1.0
2,468,637 - CCNA_02326 0.52 +0.9
2,468,972 - CCNA_02326 0.80 -0.9
2,468,998 - CCNA_02326 0.82 +1.4
2,469,053 + CCNA_02326 0.86 +0.3
2,469,202 - +0.3
2,469,222 - +0.5
2,469,380 - +0.2
2,469,406 + -0.5
2,469,495 + CCNA_02327 0.15 -0.1
2,469,499 + CCNA_02327 0.15 -0.1
2,469,501 - CCNA_02327 0.15 +1.3
2,469,517 + CCNA_02327 0.17 -0.0
2,469,536 - CCNA_02327 0.20 +0.6
2,469,577 + CCNA_02327 0.25 +0.6
2,469,585 - CCNA_02327 0.26 -0.0
2,469,585 - CCNA_02327 0.26 -0.3
2,469,585 - CCNA_02327 0.26 +0.4
2,469,585 - CCNA_02327 0.26 +0.1
2,469,630 + CCNA_02327 0.31 +1.0
2,469,638 - CCNA_02327 0.32 +1.9
2,469,638 - CCNA_02327 0.32 +0.4
2,469,719 - CCNA_02327 0.42 -0.1
2,469,719 - CCNA_02327 0.42 +0.0
2,469,723 + CCNA_02327 0.42 -1.2
2,469,723 + CCNA_02327 0.42 -0.5
2,469,723 + CCNA_02327 0.42 -0.5
2,469,723 + CCNA_02327 0.42 -0.4
2,469,723 + CCNA_02327 0.42 -0.7
2,469,731 - CCNA_02327 0.43 -0.0
2,469,731 - CCNA_02327 0.43 +1.5
2,469,731 - CCNA_02327 0.43 -2.0
2,469,731 - CCNA_02327 0.43 +0.4
2,469,731 - CCNA_02327 0.43 +0.9
2,469,731 - CCNA_02327 0.43 +0.4
2,469,731 - CCNA_02327 0.43 -0.0
2,469,731 - CCNA_02327 0.43 -0.5
2,469,731 - CCNA_02327 0.43 +0.0
2,469,731 - CCNA_02327 0.43 +0.7
2,469,731 - CCNA_02327 0.43 +0.5
2,469,731 - CCNA_02327 0.43 +0.2
2,469,731 - CCNA_02327 0.43 +1.0
2,469,731 - CCNA_02327 0.43 -0.8
2,469,731 - CCNA_02327 0.43 -1.0
2,469,731 - CCNA_02327 0.43 +0.8
2,469,731 - CCNA_02327 0.43 -0.1
2,469,731 - CCNA_02327 0.43 +0.7
2,469,731 - CCNA_02327 0.43 +0.0
2,469,731 - CCNA_02327 0.43 -0.6
2,469,786 - CCNA_02327 0.50 -0.2
2,469,793 + CCNA_02327 0.51 -1.2
2,469,801 - CCNA_02327 0.52 +0.5
2,469,810 + CCNA_02327 0.53 -0.2
2,469,827 + CCNA_02327 0.55 +0.9
2,469,828 + CCNA_02327 0.55 +0.7
2,469,828 + CCNA_02327 0.55 -0.4
2,469,828 + CCNA_02327 0.55 -2.4
2,469,861 + CCNA_02327 0.59 +0.6
2,469,907 - CCNA_02327 0.65 +1.4
2,469,945 + CCNA_02327 0.69 +0.9
2,469,953 - CCNA_02327 0.70 -0.1
2,469,963 - CCNA_02327 0.72 +1.2
2,469,979 + CCNA_02327 0.74 +1.2
2,469,988 - CCNA_02327 0.75 -0.2
2,469,997 - CCNA_02327 0.76 -0.0
2,469,997 - CCNA_02327 0.76 -0.5
2,470,023 + CCNA_02327 0.79 +0.4
2,470,043 - CCNA_02327 0.81 +0.1
2,470,055 - CCNA_02327 0.83 -0.2
2,470,107 + CCNA_02327 0.89 -1.0
2,470,115 - +0.3
2,470,151 + -0.8
2,470,158 - +0.1
2,470,196 - +0.4
2,470,205 + +0.6

Or see this region's nucleotide sequence