Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02301

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02299 and CCNA_02300 overlap by 4 nucleotidesCCNA_02300 and CCNA_02301 overlap by 4 nucleotidesCCNA_02301 and CCNA_02302 overlap by 4 nucleotidesCCNA_02302 and CCNA_02303 overlap by 4 nucleotides CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528 _02299 CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418 _02300 CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032 _02301 CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739 _02302 CCNA_02303: CCNA_02303 - cation transport protein chaC, at 2,448,736 to 2,449,281 _02303 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2447.422 kb on - strandat 2447.442 kb on + strandat 2447.452 kb on + strandat 2447.546 kb on - strand, within CCNA_02301at 2447.594 kb on + strand, within CCNA_02301at 2447.602 kb on - strand, within CCNA_02301at 2447.609 kb on - strand, within CCNA_02301at 2447.609 kb on - strand, within CCNA_02301at 2447.671 kb on - strand, within CCNA_02301at 2447.682 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.700 kb on + strand, within CCNA_02301at 2447.708 kb on - strand, within CCNA_02301at 2447.715 kb on + strand, within CCNA_02301at 2447.717 kb on + strand, within CCNA_02301at 2447.759 kb on - strand, within CCNA_02301at 2447.762 kb on + strand, within CCNA_02301at 2447.773 kb on + strand, within CCNA_02301at 2447.843 kb on + strand, within CCNA_02301at 2447.843 kb on + strand, within CCNA_02301at 2447.851 kb on - strand, within CCNA_02301at 2447.851 kb on - strand, within CCNA_02301at 2447.900 kb on + strand, within CCNA_02301at 2447.924 kb on + strand, within CCNA_02301at 2447.950 kb on - strand, within CCNA_02301at 2448.004 kb on - strandat 2448.026 kb on + strandat 2448.026 kb on + strandat 2448.724 kb on - strandat 2448.733 kb on + strandat 2448.741 kb on - strandat 2448.778 kb on - strandat 2448.803 kb on - strand, within CCNA_02303at 2448.819 kb on - strand, within CCNA_02303at 2448.845 kb on + strand, within CCNA_02303at 2448.845 kb on + strand, within CCNA_02303at 2448.847 kb on - strand, within CCNA_02303at 2448.853 kb on - strand, within CCNA_02303at 2448.859 kb on - strand, within CCNA_02303at 2448.859 kb on - strand, within CCNA_02303at 2448.879 kb on - strand, within CCNA_02303at 2448.888 kb on + strand, within CCNA_02303at 2448.951 kb on + strand, within CCNA_02303

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,447,422 - -0.7
2,447,442 + -0.2
2,447,452 + +0.6
2,447,546 - CCNA_02301 0.21 -1.3
2,447,594 + CCNA_02301 0.29 -0.2
2,447,602 - CCNA_02301 0.30 +0.0
2,447,609 - CCNA_02301 0.31 +1.0
2,447,609 - CCNA_02301 0.31 +0.0
2,447,671 - CCNA_02301 0.41 -0.1
2,447,682 + CCNA_02301 0.43 +0.4
2,447,700 + CCNA_02301 0.46 +2.9
2,447,700 + CCNA_02301 0.46 +0.3
2,447,708 - CCNA_02301 0.47 -0.6
2,447,715 + CCNA_02301 0.49 +0.4
2,447,717 + CCNA_02301 0.49 +0.7
2,447,759 - CCNA_02301 0.56 +0.8
2,447,762 + CCNA_02301 0.56 +0.7
2,447,773 + CCNA_02301 0.58 +1.7
2,447,843 + CCNA_02301 0.69 +0.9
2,447,843 + CCNA_02301 0.69 -0.1
2,447,851 - CCNA_02301 0.71 +0.1
2,447,851 - CCNA_02301 0.71 +0.3
2,447,900 + CCNA_02301 0.78 -0.1
2,447,924 + CCNA_02301 0.82 +1.4
2,447,950 - CCNA_02301 0.87 +1.8
2,448,004 - -2.1
2,448,026 + -0.0
2,448,026 + -1.3
2,448,724 - -1.2
2,448,733 + +0.2
2,448,741 - -0.7
2,448,778 - +1.8
2,448,803 - CCNA_02303 0.12 +0.3
2,448,819 - CCNA_02303 0.15 +0.1
2,448,845 + CCNA_02303 0.20 +0.7
2,448,845 + CCNA_02303 0.20 +0.1
2,448,847 - CCNA_02303 0.20 +0.4
2,448,853 - CCNA_02303 0.21 +1.3
2,448,859 - CCNA_02303 0.23 +1.5
2,448,859 - CCNA_02303 0.23 +0.4
2,448,879 - CCNA_02303 0.26 -1.4
2,448,888 + CCNA_02303 0.28 -1.5
2,448,951 + CCNA_02303 0.39 -0.1

Or see this region's nucleotide sequence