Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02299 and CCNA_02300 overlap by 4 nucleotides CCNA_02300 and CCNA_02301 overlap by 4 nucleotides CCNA_02301 and CCNA_02302 overlap by 4 nucleotides CCNA_02302 and CCNA_02303 overlap by 4 nucleotides
CCNA_02299: CCNA_02299 - cell division ATP-binding protein FtsE, at 2,445,821 to 2,446,528
_02299
CCNA_02300: CCNA_02300 - cell division protein FtsX, at 2,446,525 to 2,447,418
_02300
CCNA_02301: CCNA_02301 - YdcF-like family protein, at 2,447,415 to 2,448,032
_02301
CCNA_02302: CCNA_02302 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,448,029 to 2,448,739
_02302
CCNA_02303: CCNA_02303 - cation transport protein chaC, at 2,448,736 to 2,449,281
_02303
Position (kb)
2447
2448
2449 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2447.422 kb on - strand at 2447.442 kb on + strand at 2447.452 kb on + strand at 2447.546 kb on - strand, within CCNA_02301 at 2447.594 kb on + strand, within CCNA_02301 at 2447.602 kb on - strand, within CCNA_02301 at 2447.609 kb on - strand, within CCNA_02301 at 2447.609 kb on - strand, within CCNA_02301 at 2447.671 kb on - strand, within CCNA_02301 at 2447.682 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.700 kb on + strand, within CCNA_02301 at 2447.708 kb on - strand, within CCNA_02301 at 2447.715 kb on + strand, within CCNA_02301 at 2447.717 kb on + strand, within CCNA_02301 at 2447.759 kb on - strand, within CCNA_02301 at 2447.762 kb on + strand, within CCNA_02301 at 2447.773 kb on + strand, within CCNA_02301 at 2447.843 kb on + strand, within CCNA_02301 at 2447.843 kb on + strand, within CCNA_02301 at 2447.851 kb on - strand, within CCNA_02301 at 2447.851 kb on - strand, within CCNA_02301 at 2447.900 kb on + strand, within CCNA_02301 at 2447.924 kb on + strand, within CCNA_02301 at 2447.950 kb on - strand, within CCNA_02301 at 2448.004 kb on - strand at 2448.026 kb on + strand at 2448.026 kb on + strand at 2448.724 kb on - strand at 2448.733 kb on + strand at 2448.741 kb on - strand at 2448.778 kb on - strand at 2448.803 kb on - strand, within CCNA_02303 at 2448.819 kb on - strand, within CCNA_02303 at 2448.845 kb on + strand, within CCNA_02303 at 2448.845 kb on + strand, within CCNA_02303 at 2448.847 kb on - strand, within CCNA_02303 at 2448.853 kb on - strand, within CCNA_02303 at 2448.859 kb on - strand, within CCNA_02303 at 2448.859 kb on - strand, within CCNA_02303 at 2448.879 kb on - strand, within CCNA_02303 at 2448.888 kb on + strand, within CCNA_02303 at 2448.951 kb on + strand, within CCNA_02303
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,447,422 - -0.7 2,447,442 + -0.2 2,447,452 + +0.6 2,447,546 - CCNA_02301 0.21 -1.3 2,447,594 + CCNA_02301 0.29 -0.2 2,447,602 - CCNA_02301 0.30 +0.0 2,447,609 - CCNA_02301 0.31 +1.0 2,447,609 - CCNA_02301 0.31 +0.0 2,447,671 - CCNA_02301 0.41 -0.1 2,447,682 + CCNA_02301 0.43 +0.4 2,447,700 + CCNA_02301 0.46 +2.9 2,447,700 + CCNA_02301 0.46 +0.3 2,447,708 - CCNA_02301 0.47 -0.6 2,447,715 + CCNA_02301 0.49 +0.4 2,447,717 + CCNA_02301 0.49 +0.7 2,447,759 - CCNA_02301 0.56 +0.8 2,447,762 + CCNA_02301 0.56 +0.7 2,447,773 + CCNA_02301 0.58 +1.7 2,447,843 + CCNA_02301 0.69 +0.9 2,447,843 + CCNA_02301 0.69 -0.1 2,447,851 - CCNA_02301 0.71 +0.1 2,447,851 - CCNA_02301 0.71 +0.3 2,447,900 + CCNA_02301 0.78 -0.1 2,447,924 + CCNA_02301 0.82 +1.4 2,447,950 - CCNA_02301 0.87 +1.8 2,448,004 - -2.1 2,448,026 + -0.0 2,448,026 + -1.3 2,448,724 - -1.2 2,448,733 + +0.2 2,448,741 - -0.7 2,448,778 - +1.8 2,448,803 - CCNA_02303 0.12 +0.3 2,448,819 - CCNA_02303 0.15 +0.1 2,448,845 + CCNA_02303 0.20 +0.7 2,448,845 + CCNA_02303 0.20 +0.1 2,448,847 - CCNA_02303 0.20 +0.4 2,448,853 - CCNA_02303 0.21 +1.3 2,448,859 - CCNA_02303 0.23 +1.5 2,448,859 - CCNA_02303 0.23 +0.4 2,448,879 - CCNA_02303 0.26 -1.4 2,448,888 + CCNA_02303 0.28 -1.5 2,448,951 + CCNA_02303 0.39 -0.1
Or see this region's nucleotide sequence