Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02274 and CCNA_02275 overlap by 4 nucleotides CCNA_02275 and CCNA_02277 are separated by 162 nucleotides CCNA_02277 and CCNA_02278 are separated by 106 nucleotides CCNA_02278 and CCNA_02279 overlap by 4 nucleotides
CCNA_02274: CCNA_02274 - EF-Hand domain protein, at 2,425,338 to 2,425,823
_02274
CCNA_02275: CCNA_02275 - ABC transporter, periplasmic component, at 2,425,820 to 2,426,605
_02275
CCNA_02277: CCNA_02277 - TonB-dependent outer membrane channel, at 2,426,768 to 2,428,969
_02277
CCNA_02278: CCNA_02278 - hypothetical protein, at 2,429,076 to 2,429,684
_02278
CCNA_02279: CCNA_02279 - disulfide bond formation protein B, at 2,429,681 to 2,430,310
_02279
Position (kb)
2426
2427
2428
2429 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2425.772 kb on - strand, within CCNA_02274 at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.782 kb on + strand at 2425.790 kb on + strand at 2425.790 kb on - strand at 2425.838 kb on + strand at 2425.856 kb on + strand at 2426.013 kb on - strand, within CCNA_02275 at 2426.015 kb on + strand, within CCNA_02275 at 2426.020 kb on + strand, within CCNA_02275 at 2426.075 kb on + strand, within CCNA_02275 at 2426.120 kb on + strand, within CCNA_02275 at 2426.120 kb on - strand, within CCNA_02275 at 2426.127 kb on + strand, within CCNA_02275 at 2426.128 kb on - strand, within CCNA_02275 at 2426.191 kb on + strand, within CCNA_02275 at 2426.192 kb on + strand, within CCNA_02275 at 2426.193 kb on + strand, within CCNA_02275 at 2426.195 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.199 kb on - strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.256 kb on + strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.264 kb on - strand, within CCNA_02275 at 2426.291 kb on + strand, within CCNA_02275 at 2426.304 kb on - strand, within CCNA_02275 at 2426.324 kb on - strand, within CCNA_02275 at 2426.331 kb on + strand, within CCNA_02275 at 2426.337 kb on + strand, within CCNA_02275 at 2426.347 kb on + strand, within CCNA_02275 at 2426.355 kb on - strand, within CCNA_02275 at 2426.390 kb on - strand, within CCNA_02275 at 2426.415 kb on - strand, within CCNA_02275 at 2426.415 kb on - strand, within CCNA_02275 at 2426.458 kb on - strand, within CCNA_02275 at 2426.465 kb on + strand, within CCNA_02275 at 2426.465 kb on + strand, within CCNA_02275 at 2426.473 kb on - strand, within CCNA_02275 at 2426.473 kb on - strand, within CCNA_02275 at 2426.531 kb on + strand at 2426.558 kb on + strand at 2426.576 kb on + strand at 2426.584 kb on - strand at 2426.622 kb on - strand at 2426.682 kb on + strand at 2426.695 kb on - strand at 2426.725 kb on + strand at 2426.733 kb on + strand at 2426.751 kb on + strand at 2426.751 kb on + strand at 2426.759 kb on - strand at 2426.759 kb on - strand at 2426.836 kb on + strand at 2426.845 kb on + strand at 2426.906 kb on + strand at 2426.912 kb on + strand at 2426.912 kb on + strand at 2426.912 kb on + strand at 2426.917 kb on + strand at 2426.917 kb on + strand at 2426.925 kb on - strand at 2426.985 kb on + strand at 2426.985 kb on + strand at 2427.104 kb on + strand, within CCNA_02277 at 2427.111 kb on + strand, within CCNA_02277 at 2427.206 kb on + strand, within CCNA_02277 at 2427.206 kb on + strand, within CCNA_02277 at 2427.248 kb on + strand, within CCNA_02277 at 2427.344 kb on + strand, within CCNA_02277 at 2427.370 kb on + strand, within CCNA_02277 at 2427.378 kb on - strand, within CCNA_02277 at 2427.429 kb on + strand, within CCNA_02277 at 2427.429 kb on + strand, within CCNA_02277 at 2427.437 kb on - strand, within CCNA_02277 at 2427.508 kb on + strand, within CCNA_02277 at 2427.523 kb on + strand, within CCNA_02277 at 2427.523 kb on + strand, within CCNA_02277 at 2427.523 kb on + strand, within CCNA_02277 at 2427.523 kb on + strand, within CCNA_02277 at 2427.536 kb on - strand, within CCNA_02277 at 2427.708 kb on + strand, within CCNA_02277 at 2427.806 kb on + strand, within CCNA_02277 at 2427.909 kb on + strand, within CCNA_02277 at 2427.974 kb on + strand, within CCNA_02277 at 2427.974 kb on + strand, within CCNA_02277 at 2428.095 kb on + strand, within CCNA_02277 at 2428.275 kb on - strand, within CCNA_02277 at 2428.502 kb on - strand, within CCNA_02277 at 2428.533 kb on + strand, within CCNA_02277 at 2428.597 kb on + strand, within CCNA_02277 at 2428.736 kb on + strand, within CCNA_02277 at 2428.839 kb on + strand at 2428.891 kb on + strand at 2429.623 kb on - strand, within CCNA_02278 at 2429.627 kb on - strand at 2429.695 kb on + strand at 2429.748 kb on - strand, within CCNA_02279 at 2429.748 kb on - strand, within CCNA_02279 at 2429.962 kb on + strand, within CCNA_02279
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,425,772 - CCNA_02274 0.89 +1.5 2,425,782 + -1.1 2,425,782 + +0.4 2,425,782 + +0.3 2,425,790 + +0.7 2,425,790 - +0.4 2,425,838 + -1.2 2,425,856 + -2.2 2,426,013 - CCNA_02275 0.25 +0.5 2,426,015 + CCNA_02275 0.25 -0.7 2,426,020 + CCNA_02275 0.25 -2.4 2,426,075 + CCNA_02275 0.32 +0.1 2,426,120 + CCNA_02275 0.38 -0.2 2,426,120 - CCNA_02275 0.38 +0.2 2,426,127 + CCNA_02275 0.39 +2.4 2,426,128 - CCNA_02275 0.39 +0.5 2,426,191 + CCNA_02275 0.47 -1.5 2,426,192 + CCNA_02275 0.47 +0.3 2,426,193 + CCNA_02275 0.47 -1.0 2,426,195 - CCNA_02275 0.48 +0.7 2,426,199 - CCNA_02275 0.48 +0.4 2,426,199 - CCNA_02275 0.48 -0.4 2,426,199 - CCNA_02275 0.48 +1.1 2,426,256 + CCNA_02275 0.55 +0.5 2,426,256 + CCNA_02275 0.55 +0.7 2,426,256 + CCNA_02275 0.55 +0.3 2,426,256 + CCNA_02275 0.55 -2.2 2,426,264 - CCNA_02275 0.56 +0.7 2,426,264 - CCNA_02275 0.56 +0.9 2,426,264 - CCNA_02275 0.56 +0.4 2,426,291 + CCNA_02275 0.60 -2.7 2,426,304 - CCNA_02275 0.62 +0.8 2,426,324 - CCNA_02275 0.64 -0.0 2,426,331 + CCNA_02275 0.65 -1.3 2,426,337 + CCNA_02275 0.66 +0.2 2,426,347 + CCNA_02275 0.67 -0.3 2,426,355 - CCNA_02275 0.68 +0.5 2,426,390 - CCNA_02275 0.73 +0.9 2,426,415 - CCNA_02275 0.76 +0.4 2,426,415 - CCNA_02275 0.76 +1.1 2,426,458 - CCNA_02275 0.81 +0.1 2,426,465 + CCNA_02275 0.82 +1.3 2,426,465 + CCNA_02275 0.82 -2.4 2,426,473 - CCNA_02275 0.83 +0.3 2,426,473 - CCNA_02275 0.83 -0.1 2,426,531 + +0.6 2,426,558 + -0.8 2,426,576 + +0.3 2,426,584 - +1.1 2,426,622 - +0.1 2,426,682 + +0.5 2,426,695 - -0.7 2,426,725 + +0.7 2,426,733 + +0.6 2,426,751 + +0.4 2,426,751 + +1.0 2,426,759 - -0.6 2,426,759 - -0.4 2,426,836 + +0.4 2,426,845 + +0.4 2,426,906 + +0.9 2,426,912 + -0.1 2,426,912 + -0.2 2,426,912 + +0.4 2,426,917 + +0.5 2,426,917 + +0.5 2,426,925 - +0.6 2,426,985 + +0.2 2,426,985 + +0.5 2,427,104 + CCNA_02277 0.15 +0.6 2,427,111 + CCNA_02277 0.16 +1.3 2,427,206 + CCNA_02277 0.20 +0.5 2,427,206 + CCNA_02277 0.20 +0.7 2,427,248 + CCNA_02277 0.22 +0.6 2,427,344 + CCNA_02277 0.26 +0.0 2,427,370 + CCNA_02277 0.27 +0.2 2,427,378 - CCNA_02277 0.28 +0.1 2,427,429 + CCNA_02277 0.30 +0.6 2,427,429 + CCNA_02277 0.30 +0.3 2,427,437 - CCNA_02277 0.30 -2.0 2,427,508 + CCNA_02277 0.34 +0.5 2,427,523 + CCNA_02277 0.34 -0.1 2,427,523 + CCNA_02277 0.34 +0.6 2,427,523 + CCNA_02277 0.34 +0.6 2,427,523 + CCNA_02277 0.34 +0.1 2,427,536 - CCNA_02277 0.35 +2.5 2,427,708 + CCNA_02277 0.43 +0.3 2,427,806 + CCNA_02277 0.47 +0.7 2,427,909 + CCNA_02277 0.52 +0.4 2,427,974 + CCNA_02277 0.55 +0.7 2,427,974 + CCNA_02277 0.55 +0.3 2,428,095 + CCNA_02277 0.60 +0.9 2,428,275 - CCNA_02277 0.68 +0.6 2,428,502 - CCNA_02277 0.79 +1.9 2,428,533 + CCNA_02277 0.80 +0.7 2,428,597 + CCNA_02277 0.83 -0.2 2,428,736 + CCNA_02277 0.89 +0.2 2,428,839 + -0.2 2,428,891 + +0.6 2,429,623 - CCNA_02278 0.90 -1.6 2,429,627 - -0.3 2,429,695 + +0.5 2,429,748 - CCNA_02279 0.11 +0.3 2,429,748 - CCNA_02279 0.11 +1.6 2,429,962 + CCNA_02279 0.45 +0.3
Or see this region's nucleotide sequence