Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02203

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02201 and CCNA_02202 are separated by 68 nucleotidesCCNA_02202 and CCNA_02203 are separated by 2 nucleotidesCCNA_02203 and CCNA_02204 are separated by 138 nucleotides CCNA_02201: CCNA_02201 - nucleoside 2-deoxyribosyltransferase, at 2,349,785 to 2,350,345 _02201 CCNA_02202: CCNA_02202 - SCP domain protein, at 2,350,414 to 2,351,211 _02202 CCNA_02203: CCNA_02203 - YceI-like domain protein, at 2,351,214 to 2,351,792 _02203 CCNA_02204: CCNA_02204 - ketol-acid reductoisomerase/2-dehydropantoate 2-reductase, at 2,351,931 to 2,352,950 _02204 Position (kb) 2351 2352Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2350.253 kb on - strand, within CCNA_02201at 2350.304 kb on + strandat 2350.306 kb on + strandat 2350.312 kb on - strandat 2350.341 kb on + strandat 2350.346 kb on - strandat 2350.346 kb on - strandat 2350.349 kb on + strandat 2350.349 kb on + strandat 2350.357 kb on - strandat 2350.362 kb on - strandat 2350.368 kb on + strandat 2350.375 kb on + strandat 2350.376 kb on - strandat 2350.392 kb on + strandat 2350.450 kb on + strandat 2350.477 kb on - strandat 2350.610 kb on + strand, within CCNA_02202at 2350.616 kb on + strand, within CCNA_02202at 2350.624 kb on - strand, within CCNA_02202at 2350.624 kb on - strand, within CCNA_02202at 2350.629 kb on + strand, within CCNA_02202at 2350.635 kb on + strand, within CCNA_02202at 2350.635 kb on + strand, within CCNA_02202at 2350.655 kb on - strand, within CCNA_02202at 2350.736 kb on + strand, within CCNA_02202at 2350.794 kb on - strand, within CCNA_02202at 2350.825 kb on - strand, within CCNA_02202at 2350.839 kb on + strand, within CCNA_02202at 2350.850 kb on + strand, within CCNA_02202at 2350.883 kb on + strand, within CCNA_02202at 2350.915 kb on - strand, within CCNA_02202at 2350.963 kb on + strand, within CCNA_02202at 2350.963 kb on + strand, within CCNA_02202at 2350.973 kb on + strand, within CCNA_02202at 2350.989 kb on - strand, within CCNA_02202at 2351.016 kb on + strand, within CCNA_02202at 2351.022 kb on + strand, within CCNA_02202at 2351.030 kb on - strand, within CCNA_02202at 2351.030 kb on - strand, within CCNA_02202at 2351.057 kb on + strand, within CCNA_02202at 2351.101 kb on - strand, within CCNA_02202at 2351.101 kb on - strand, within CCNA_02202at 2351.117 kb on + strand, within CCNA_02202at 2351.117 kb on + strand, within CCNA_02202at 2351.125 kb on - strand, within CCNA_02202at 2351.159 kb on - strandat 2351.161 kb on + strandat 2351.205 kb on + strandat 2351.294 kb on + strand, within CCNA_02203at 2351.312 kb on - strand, within CCNA_02203at 2351.354 kb on + strand, within CCNA_02203at 2351.359 kb on + strand, within CCNA_02203at 2351.391 kb on - strand, within CCNA_02203at 2351.394 kb on + strand, within CCNA_02203at 2351.434 kb on - strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.512 kb on + strand, within CCNA_02203at 2351.520 kb on - strand, within CCNA_02203at 2351.520 kb on - strand, within CCNA_02203at 2351.520 kb on - strand, within CCNA_02203at 2351.520 kb on - strand, within CCNA_02203at 2351.520 kb on - strand, within CCNA_02203at 2351.550 kb on - strand, within CCNA_02203at 2351.599 kb on + strand, within CCNA_02203at 2351.647 kb on + strand, within CCNA_02203at 2351.681 kb on + strand, within CCNA_02203at 2351.738 kb on - strandat 2351.827 kb on + strandat 2351.827 kb on + strandat 2351.836 kb on + strandat 2351.846 kb on + strandat 2351.846 kb on + strandat 2351.854 kb on - strandat 2351.854 kb on - strandat 2351.854 kb on - strandat 2351.864 kb on - strandat 2351.910 kb on - strandat 2351.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,350,253 - CCNA_02201 0.83 -0.2
2,350,304 + -0.3
2,350,306 + +0.0
2,350,312 - +0.0
2,350,341 + -0.3
2,350,346 - -0.0
2,350,346 - +1.8
2,350,349 + +0.2
2,350,349 + -0.1
2,350,357 - -0.9
2,350,362 - -1.1
2,350,368 + +0.3
2,350,375 + -0.0
2,350,376 - +0.2
2,350,392 + -0.5
2,350,450 + -0.3
2,350,477 - -0.3
2,350,610 + CCNA_02202 0.25 -0.0
2,350,616 + CCNA_02202 0.25 +0.1
2,350,624 - CCNA_02202 0.26 +0.2
2,350,624 - CCNA_02202 0.26 -1.0
2,350,629 + CCNA_02202 0.27 +0.3
2,350,635 + CCNA_02202 0.28 -0.1
2,350,635 + CCNA_02202 0.28 -0.6
2,350,655 - CCNA_02202 0.30 -0.4
2,350,736 + CCNA_02202 0.40 -2.7
2,350,794 - CCNA_02202 0.48 -0.4
2,350,825 - CCNA_02202 0.52 +0.1
2,350,839 + CCNA_02202 0.53 +0.9
2,350,850 + CCNA_02202 0.55 +0.5
2,350,883 + CCNA_02202 0.59 +1.4
2,350,915 - CCNA_02202 0.63 -1.4
2,350,963 + CCNA_02202 0.69 +3.1
2,350,963 + CCNA_02202 0.69 +0.2
2,350,973 + CCNA_02202 0.70 -0.5
2,350,989 - CCNA_02202 0.72 -0.3
2,351,016 + CCNA_02202 0.75 +0.0
2,351,022 + CCNA_02202 0.76 -1.1
2,351,030 - CCNA_02202 0.77 +0.2
2,351,030 - CCNA_02202 0.77 -0.4
2,351,057 + CCNA_02202 0.81 -0.2
2,351,101 - CCNA_02202 0.86 +0.6
2,351,101 - CCNA_02202 0.86 -0.3
2,351,117 + CCNA_02202 0.88 -0.0
2,351,117 + CCNA_02202 0.88 +0.2
2,351,125 - CCNA_02202 0.89 -0.1
2,351,159 - -0.4
2,351,161 + +0.9
2,351,205 + -0.6
2,351,294 + CCNA_02203 0.14 -0.4
2,351,312 - CCNA_02203 0.17 +0.6
2,351,354 + CCNA_02203 0.24 +0.4
2,351,359 + CCNA_02203 0.25 +0.9
2,351,391 - CCNA_02203 0.31 +0.8
2,351,394 + CCNA_02203 0.31 +1.1
2,351,434 - CCNA_02203 0.38 +0.6
2,351,512 + CCNA_02203 0.51 +0.0
2,351,512 + CCNA_02203 0.51 +0.2
2,351,512 + CCNA_02203 0.51 +1.5
2,351,512 + CCNA_02203 0.51 -0.8
2,351,512 + CCNA_02203 0.51 -0.9
2,351,512 + CCNA_02203 0.51 +0.2
2,351,512 + CCNA_02203 0.51 -0.5
2,351,520 - CCNA_02203 0.53 -0.4
2,351,520 - CCNA_02203 0.53 +0.6
2,351,520 - CCNA_02203 0.53 -0.7
2,351,520 - CCNA_02203 0.53 +0.6
2,351,520 - CCNA_02203 0.53 +0.9
2,351,550 - CCNA_02203 0.58 -0.4
2,351,599 + CCNA_02203 0.66 +0.7
2,351,647 + CCNA_02203 0.75 +0.5
2,351,681 + CCNA_02203 0.81 +1.6
2,351,738 - +0.1
2,351,827 + -0.3
2,351,827 + -0.4
2,351,836 + +2.0
2,351,846 + -0.1
2,351,846 + +1.4
2,351,854 - +0.1
2,351,854 - +0.3
2,351,854 - +0.4
2,351,864 - +0.9
2,351,910 - +0.7
2,351,983 - +0.0

Or see this region's nucleotide sequence