Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02167 and CCNA_03897 are separated by 73 nucleotides CCNA_03897 and CCNA_02169 are separated by 102 nucleotides CCNA_02169 and CCNA_02170 are separated by 116 nucleotides CCNA_02170 and CCNA_02171 are separated by 62 nucleotides
CCNA_02167: CCNA_02167 - glutathione S-transferase, at 2,320,949 to 2,321,581
_02167
CCNA_03897: CCNA_03897 - hypothetical protein, at 2,321,655 to 2,321,942
_03897
CCNA_02169: CCNA_02169 - thioesterase superfamily protein, at 2,322,045 to 2,322,497
_02169
CCNA_02170: CCNA_02170 - glutathione S-transferase, at 2,322,614 to 2,323,237
_02170
CCNA_02171: CCNA_02171 - nucleoside permease nupC, at 2,323,300 to 2,324,580
_02171
Position (kb)
2322
2323 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2321.115 kb on - strand, within CCNA_02167 at 2321.140 kb on - strand, within CCNA_02167 at 2321.155 kb on + strand, within CCNA_02167 at 2321.163 kb on - strand, within CCNA_02167 at 2321.252 kb on + strand, within CCNA_02167 at 2321.260 kb on - strand, within CCNA_02167 at 2321.310 kb on - strand, within CCNA_02167 at 2321.329 kb on + strand, within CCNA_02167 at 2321.337 kb on - strand, within CCNA_02167 at 2321.349 kb on + strand, within CCNA_02167 at 2321.356 kb on + strand, within CCNA_02167 at 2321.379 kb on - strand, within CCNA_02167 at 2321.389 kb on + strand, within CCNA_02167 at 2321.469 kb on + strand, within CCNA_02167 at 2321.469 kb on + strand, within CCNA_02167 at 2321.477 kb on - strand, within CCNA_02167 at 2321.493 kb on + strand, within CCNA_02167 at 2321.493 kb on + strand, within CCNA_02167 at 2321.494 kb on + strand, within CCNA_02167 at 2321.494 kb on + strand, within CCNA_02167 at 2321.501 kb on - strand, within CCNA_02167 at 2321.501 kb on - strand, within CCNA_02167 at 2321.515 kb on - strand, within CCNA_02167 at 2321.515 kb on - strand, within CCNA_02167 at 2321.515 kb on - strand, within CCNA_02167 at 2321.515 kb on - strand, within CCNA_02167 at 2321.515 kb on - strand, within CCNA_02167 at 2321.531 kb on + strand at 2321.603 kb on - strand at 2321.606 kb on + strand at 2321.606 kb on + strand at 2321.606 kb on + strand at 2321.613 kb on - strand at 2321.614 kb on - strand at 2321.614 kb on - strand at 2321.660 kb on - strand at 2321.728 kb on + strand, within CCNA_03897 at 2321.776 kb on - strand, within CCNA_03897 at 2321.803 kb on + strand, within CCNA_03897 at 2321.828 kb on - strand, within CCNA_03897 at 2321.915 kb on + strand at 2321.933 kb on + strand at 2322.049 kb on - strand at 2322.073 kb on + strand at 2322.124 kb on + strand, within CCNA_02169 at 2322.146 kb on + strand, within CCNA_02169 at 2322.171 kb on + strand, within CCNA_02169 at 2322.299 kb on - strand, within CCNA_02169 at 2322.302 kb on + strand, within CCNA_02169 at 2322.322 kb on + strand, within CCNA_02169 at 2322.383 kb on + strand, within CCNA_02169 at 2322.435 kb on - strand, within CCNA_02169 at 2322.439 kb on - strand, within CCNA_02169 at 2322.442 kb on + strand, within CCNA_02169 at 2322.463 kb on + strand at 2322.469 kb on - strand at 2322.509 kb on - strand at 2322.544 kb on - strand at 2322.571 kb on + strand at 2322.579 kb on - strand at 2322.579 kb on - strand at 2322.581 kb on + strand at 2322.581 kb on + strand at 2322.581 kb on + strand at 2322.581 kb on + strand at 2322.589 kb on - strand at 2322.589 kb on - strand at 2322.589 kb on - strand at 2322.589 kb on - strand at 2322.589 kb on - strand at 2322.619 kb on - strand at 2322.675 kb on + strand at 2322.816 kb on - strand, within CCNA_02170 at 2322.816 kb on - strand, within CCNA_02170 at 2322.835 kb on - strand, within CCNA_02170 at 2322.860 kb on - strand, within CCNA_02170 at 2322.893 kb on + strand, within CCNA_02170 at 2322.895 kb on + strand, within CCNA_02170 at 2322.903 kb on - strand, within CCNA_02170 at 2323.002 kb on + strand, within CCNA_02170 at 2323.002 kb on + strand, within CCNA_02170 at 2323.005 kb on - strand, within CCNA_02170 at 2323.066 kb on + strand, within CCNA_02170 at 2323.074 kb on - strand, within CCNA_02170 at 2323.074 kb on - strand, within CCNA_02170 at 2323.074 kb on - strand, within CCNA_02170 at 2323.085 kb on + strand, within CCNA_02170 at 2323.160 kb on - strand, within CCNA_02170 at 2323.179 kb on + strand at 2323.204 kb on + strand at 2323.204 kb on + strand at 2323.253 kb on - strand at 2323.323 kb on + strand at 2323.331 kb on - strand at 2323.420 kb on + strand at 2323.490 kb on - strand, within CCNA_02171
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,321,115 - CCNA_02167 0.26 -0.5 2,321,140 - CCNA_02167 0.30 -0.1 2,321,155 + CCNA_02167 0.33 -2.8 2,321,163 - CCNA_02167 0.34 -1.3 2,321,252 + CCNA_02167 0.48 -1.0 2,321,260 - CCNA_02167 0.49 -1.1 2,321,310 - CCNA_02167 0.57 -0.9 2,321,329 + CCNA_02167 0.60 -0.6 2,321,337 - CCNA_02167 0.61 +0.4 2,321,349 + CCNA_02167 0.63 -1.5 2,321,356 + CCNA_02167 0.64 +0.6 2,321,379 - CCNA_02167 0.68 -0.0 2,321,389 + CCNA_02167 0.70 -0.2 2,321,469 + CCNA_02167 0.82 +0.4 2,321,469 + CCNA_02167 0.82 -0.5 2,321,477 - CCNA_02167 0.83 -1.8 2,321,493 + CCNA_02167 0.86 -3.2 2,321,493 + CCNA_02167 0.86 -0.5 2,321,494 + CCNA_02167 0.86 -0.3 2,321,494 + CCNA_02167 0.86 -0.2 2,321,501 - CCNA_02167 0.87 -0.1 2,321,501 - CCNA_02167 0.87 +0.6 2,321,515 - CCNA_02167 0.89 +0.2 2,321,515 - CCNA_02167 0.89 -0.3 2,321,515 - CCNA_02167 0.89 +1.1 2,321,515 - CCNA_02167 0.89 +0.2 2,321,515 - CCNA_02167 0.89 +0.5 2,321,531 + +0.9 2,321,603 - +0.7 2,321,606 + -0.4 2,321,606 + -0.6 2,321,606 + +0.4 2,321,613 - -0.5 2,321,614 - +0.6 2,321,614 - +0.1 2,321,660 - +0.4 2,321,728 + CCNA_03897 0.25 -0.8 2,321,776 - CCNA_03897 0.42 +0.1 2,321,803 + CCNA_03897 0.51 -1.3 2,321,828 - CCNA_03897 0.60 +0.4 2,321,915 + +0.1 2,321,933 + -1.3 2,322,049 - -0.4 2,322,073 + -0.6 2,322,124 + CCNA_02169 0.17 +1.2 2,322,146 + CCNA_02169 0.22 +0.4 2,322,171 + CCNA_02169 0.28 +1.0 2,322,299 - CCNA_02169 0.56 -0.7 2,322,302 + CCNA_02169 0.57 +0.1 2,322,322 + CCNA_02169 0.61 -0.3 2,322,383 + CCNA_02169 0.75 +0.8 2,322,435 - CCNA_02169 0.86 +0.9 2,322,439 - CCNA_02169 0.87 +0.7 2,322,442 + CCNA_02169 0.88 -1.8 2,322,463 + -0.5 2,322,469 - -0.9 2,322,509 - +0.3 2,322,544 - +1.2 2,322,571 + -0.4 2,322,579 - -0.1 2,322,579 - +0.7 2,322,581 + -0.8 2,322,581 + -2.1 2,322,581 + -0.8 2,322,581 + +0.1 2,322,589 - -0.2 2,322,589 - -1.4 2,322,589 - +0.3 2,322,589 - +1.5 2,322,589 - +0.6 2,322,619 - +0.7 2,322,675 + +0.6 2,322,816 - CCNA_02170 0.32 +0.2 2,322,816 - CCNA_02170 0.32 +0.1 2,322,835 - CCNA_02170 0.35 +1.4 2,322,860 - CCNA_02170 0.39 -0.1 2,322,893 + CCNA_02170 0.45 -1.5 2,322,895 + CCNA_02170 0.45 +0.6 2,322,903 - CCNA_02170 0.46 -0.6 2,323,002 + CCNA_02170 0.62 -0.6 2,323,002 + CCNA_02170 0.62 -0.8 2,323,005 - CCNA_02170 0.63 +0.8 2,323,066 + CCNA_02170 0.72 -1.2 2,323,074 - CCNA_02170 0.74 +0.8 2,323,074 - CCNA_02170 0.74 -0.9 2,323,074 - CCNA_02170 0.74 -0.2 2,323,085 + CCNA_02170 0.75 -0.1 2,323,160 - CCNA_02170 0.88 -0.2 2,323,179 + -0.3 2,323,204 + -0.3 2,323,204 + -2.7 2,323,253 - +0.1 2,323,323 + -2.3 2,323,331 - +0.2 2,323,420 + +0.8 2,323,490 - CCNA_02171 0.15 +0.8
Or see this region's nucleotide sequence