Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02163

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02161 and CCNA_02163 are separated by 322 nucleotidesCCNA_02163 and CCNA_02164 are separated by 63 nucleotides CCNA_02161: CCNA_02161 - TetR-family transcriptional regulator, at 2,316,227 to 2,316,895 _02161 CCNA_02163: CCNA_02163 - hypothetical protein, at 2,317,218 to 2,318,078 _02163 CCNA_02164: CCNA_02164 - glutamate dehydrogenase/leucine dehydrogenase, at 2,318,142 to 2,319,203 _02164 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -2 -1 0 1 2at 2316.322 kb on + strand, within CCNA_02161at 2316.356 kb on - strand, within CCNA_02161at 2316.607 kb on + strand, within CCNA_02161at 2316.661 kb on - strand, within CCNA_02161at 2316.669 kb on + strand, within CCNA_02161at 2316.677 kb on - strand, within CCNA_02161at 2316.719 kb on - strand, within CCNA_02161at 2316.719 kb on - strand, within CCNA_02161at 2316.733 kb on + strand, within CCNA_02161at 2316.742 kb on - strand, within CCNA_02161at 2316.819 kb on - strand, within CCNA_02161at 2316.908 kb on + strandat 2316.939 kb on - strandat 2317.011 kb on - strandat 2317.011 kb on - strandat 2317.011 kb on - strandat 2317.023 kb on - strandat 2317.029 kb on - strandat 2317.085 kb on + strandat 2317.152 kb on + strandat 2317.152 kb on + strandat 2317.162 kb on - strandat 2317.173 kb on + strandat 2317.173 kb on + strandat 2317.173 kb on - strandat 2317.176 kb on - strandat 2317.181 kb on - strandat 2317.181 kb on - strandat 2317.186 kb on - strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.305 kb on + strand, within CCNA_02163at 2317.357 kb on + strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.500 kb on + strand, within CCNA_02163at 2317.578 kb on + strand, within CCNA_02163at 2317.586 kb on - strand, within CCNA_02163at 2317.607 kb on + strand, within CCNA_02163at 2317.622 kb on + strand, within CCNA_02163at 2317.628 kb on + strand, within CCNA_02163at 2317.628 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.699 kb on - strand, within CCNA_02163at 2317.756 kb on - strand, within CCNA_02163at 2317.768 kb on - strand, within CCNA_02163at 2317.811 kb on - strand, within CCNA_02163at 2317.856 kb on + strand, within CCNA_02163at 2317.864 kb on + strand, within CCNA_02163at 2317.864 kb on + strand, within CCNA_02163at 2317.864 kb on - strand, within CCNA_02163at 2317.872 kb on - strand, within CCNA_02163at 2317.872 kb on - strand, within CCNA_02163at 2317.962 kb on - strand, within CCNA_02163at 2317.988 kb on + strand, within CCNA_02163at 2318.051 kb on - strandat 2318.135 kb on - strandat 2318.140 kb on + strandat 2318.178 kb on - strandat 2318.205 kb on - strandat 2318.231 kb on + strandat 2318.249 kb on - strand, within CCNA_02164at 2318.250 kb on - strand, within CCNA_02164at 2318.334 kb on - strand, within CCNA_02164at 2318.357 kb on + strand, within CCNA_02164at 2318.394 kb on - strand, within CCNA_02164at 2318.398 kb on - strand, within CCNA_02164at 2318.451 kb on - strand, within CCNA_02164at 2318.487 kb on + strand, within CCNA_02164at 2318.543 kb on + strand, within CCNA_02164at 2318.582 kb on + strand, within CCNA_02164at 2318.586 kb on + strand, within CCNA_02164at 2318.620 kb on - strand, within CCNA_02164at 2318.620 kb on - strand, within CCNA_02164at 2318.697 kb on - strand, within CCNA_02164at 2318.727 kb on - strand, within CCNA_02164at 2318.727 kb on - strand, within CCNA_02164at 2318.838 kb on - strand, within CCNA_02164at 2318.869 kb on + strand, within CCNA_02164at 2318.869 kb on + strand, within CCNA_02164at 2318.874 kb on + strand, within CCNA_02164at 2318.904 kb on + strand, within CCNA_02164at 2318.929 kb on - strand, within CCNA_02164at 2318.929 kb on - strand, within CCNA_02164at 2318.929 kb on - strand, within CCNA_02164at 2318.929 kb on - strand, within CCNA_02164at 2318.931 kb on + strand, within CCNA_02164at 2318.955 kb on + strand, within CCNA_02164at 2319.044 kb on - strand, within CCNA_02164

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,316,322 + CCNA_02161 0.14 +1.6
2,316,356 - CCNA_02161 0.19 -1.9
2,316,607 + CCNA_02161 0.57 +0.5
2,316,661 - CCNA_02161 0.65 -1.6
2,316,669 + CCNA_02161 0.66 -0.4
2,316,677 - CCNA_02161 0.67 +0.4
2,316,719 - CCNA_02161 0.74 -1.2
2,316,719 - CCNA_02161 0.74 -0.5
2,316,733 + CCNA_02161 0.76 -0.6
2,316,742 - CCNA_02161 0.77 -0.3
2,316,819 - CCNA_02161 0.88 +0.1
2,316,908 + +0.7
2,316,939 - -0.8
2,317,011 - -0.7
2,317,011 - +0.1
2,317,011 - +0.1
2,317,023 - +2.6
2,317,029 - +0.9
2,317,085 + +0.4
2,317,152 + -0.8
2,317,152 + -0.2
2,317,162 - +0.2
2,317,173 + -0.2
2,317,173 + +0.0
2,317,173 - +0.5
2,317,176 - +0.6
2,317,181 - -2.1
2,317,181 - +0.2
2,317,186 - +1.8
2,317,196 + -0.1
2,317,196 + +0.9
2,317,196 + +0.3
2,317,196 + +2.2
2,317,196 + -0.3
2,317,196 + -0.7
2,317,204 - +1.3
2,317,204 - +1.0
2,317,204 - -0.5
2,317,204 - +0.4
2,317,204 - -0.6
2,317,204 - -1.0
2,317,204 - +0.6
2,317,305 + CCNA_02163 0.10 +0.6
2,317,357 + CCNA_02163 0.16 +0.2
2,317,365 - CCNA_02163 0.17 +0.2
2,317,365 - CCNA_02163 0.17 +0.1
2,317,365 - CCNA_02163 0.17 +0.4
2,317,500 + CCNA_02163 0.33 -1.1
2,317,578 + CCNA_02163 0.42 +1.0
2,317,586 - CCNA_02163 0.43 +0.6
2,317,607 + CCNA_02163 0.45 +0.4
2,317,622 + CCNA_02163 0.47 -0.0
2,317,628 + CCNA_02163 0.48 +0.1
2,317,628 + CCNA_02163 0.48 -0.3
2,317,655 + CCNA_02163 0.51 +0.6
2,317,655 + CCNA_02163 0.51 +0.2
2,317,655 + CCNA_02163 0.51 -0.2
2,317,663 - CCNA_02163 0.52 +1.3
2,317,663 - CCNA_02163 0.52 +0.3
2,317,663 - CCNA_02163 0.52 +1.9
2,317,699 - CCNA_02163 0.56 +0.4
2,317,756 - CCNA_02163 0.62 -0.1
2,317,768 - CCNA_02163 0.64 +0.7
2,317,811 - CCNA_02163 0.69 +0.4
2,317,856 + CCNA_02163 0.74 +0.8
2,317,864 + CCNA_02163 0.75 +0.9
2,317,864 + CCNA_02163 0.75 +0.3
2,317,864 - CCNA_02163 0.75 +0.5
2,317,872 - CCNA_02163 0.76 +1.3
2,317,872 - CCNA_02163 0.76 +0.6
2,317,962 - CCNA_02163 0.86 +1.7
2,317,988 + CCNA_02163 0.89 -0.3
2,318,051 - +1.1
2,318,135 - +0.8
2,318,140 + -0.5
2,318,178 - -0.5
2,318,205 - +0.9
2,318,231 + +0.7
2,318,249 - CCNA_02164 0.10 +0.3
2,318,250 - CCNA_02164 0.10 -1.1
2,318,334 - CCNA_02164 0.18 +0.5
2,318,357 + CCNA_02164 0.20 -0.1
2,318,394 - CCNA_02164 0.24 +0.0
2,318,398 - CCNA_02164 0.24 +1.1
2,318,451 - CCNA_02164 0.29 -0.1
2,318,487 + CCNA_02164 0.32 -0.4
2,318,543 + CCNA_02164 0.38 -0.0
2,318,582 + CCNA_02164 0.41 -1.8
2,318,586 + CCNA_02164 0.42 +0.2
2,318,620 - CCNA_02164 0.45 -2.2
2,318,620 - CCNA_02164 0.45 +0.5
2,318,697 - CCNA_02164 0.52 +0.3
2,318,727 - CCNA_02164 0.55 +0.1
2,318,727 - CCNA_02164 0.55 +1.0
2,318,838 - CCNA_02164 0.66 -1.6
2,318,869 + CCNA_02164 0.68 +0.2
2,318,869 + CCNA_02164 0.68 +0.5
2,318,874 + CCNA_02164 0.69 +0.3
2,318,904 + CCNA_02164 0.72 -0.4
2,318,929 - CCNA_02164 0.74 +0.5
2,318,929 - CCNA_02164 0.74 +1.3
2,318,929 - CCNA_02164 0.74 +1.1
2,318,929 - CCNA_02164 0.74 +0.2
2,318,931 + CCNA_02164 0.74 +0.0
2,318,955 + CCNA_02164 0.77 +0.9
2,319,044 - CCNA_02164 0.85 +0.4

Or see this region's nucleotide sequence