Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02131 and CCNA_02132 are separated by 297 nucleotides CCNA_02132 and CCNA_02133 are separated by 85 nucleotides
CCNA_02131: CCNA_02131 - glucan 1,4-beta-glucosidase, at 2,285,379 to 2,287,844
_02131
CCNA_02132: CCNA_02132 - LacI-family transcriptional regulator, at 2,288,142 to 2,289,161
_02132
CCNA_02133: CCNA_02133 - glucokinase, at 2,289,247 to 2,290,242
_02133
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2287.161 kb on + strand, within CCNA_02131 at 2287.166 kb on + strand, within CCNA_02131 at 2287.169 kb on - strand, within CCNA_02131 at 2287.186 kb on + strand, within CCNA_02131 at 2287.186 kb on + strand, within CCNA_02131 at 2287.229 kb on - strand, within CCNA_02131 at 2287.244 kb on - strand, within CCNA_02131 at 2287.287 kb on - strand, within CCNA_02131 at 2287.343 kb on - strand, within CCNA_02131 at 2287.407 kb on - strand, within CCNA_02131 at 2287.489 kb on + strand, within CCNA_02131 at 2287.557 kb on + strand, within CCNA_02131 at 2287.562 kb on + strand, within CCNA_02131 at 2287.562 kb on + strand, within CCNA_02131 at 2287.565 kb on - strand, within CCNA_02131 at 2287.600 kb on - strand at 2287.625 kb on - strand at 2287.634 kb on - strand at 2287.747 kb on - strand at 2287.770 kb on - strand at 2287.780 kb on - strand at 2287.811 kb on + strand at 2287.849 kb on - strand at 2287.891 kb on - strand at 2287.911 kb on - strand at 2287.944 kb on + strand at 2287.956 kb on + strand at 2287.956 kb on + strand at 2287.956 kb on + strand at 2288.002 kb on - strand at 2288.004 kb on + strand at 2288.012 kb on - strand at 2288.012 kb on - strand at 2288.017 kb on - strand at 2288.056 kb on + strand at 2288.056 kb on + strand at 2288.056 kb on + strand at 2288.064 kb on - strand at 2288.064 kb on - strand at 2288.064 kb on - strand at 2288.064 kb on - strand at 2288.064 kb on - strand at 2288.140 kb on + strand at 2288.148 kb on - strand at 2288.219 kb on + strand at 2288.297 kb on + strand, within CCNA_02132 at 2288.385 kb on - strand, within CCNA_02132 at 2288.499 kb on + strand, within CCNA_02132 at 2288.502 kb on - strand, within CCNA_02132 at 2288.548 kb on + strand, within CCNA_02132 at 2288.635 kb on + strand, within CCNA_02132 at 2288.730 kb on + strand, within CCNA_02132 at 2288.753 kb on - strand, within CCNA_02132 at 2288.787 kb on + strand, within CCNA_02132 at 2288.787 kb on + strand, within CCNA_02132 at 2288.822 kb on + strand, within CCNA_02132 at 2288.833 kb on + strand, within CCNA_02132 at 2288.887 kb on - strand, within CCNA_02132 at 2288.887 kb on - strand, within CCNA_02132 at 2288.888 kb on - strand, within CCNA_02132 at 2288.936 kb on + strand, within CCNA_02132 at 2288.941 kb on + strand, within CCNA_02132 at 2289.071 kb on + strand at 2289.072 kb on - strand at 2289.092 kb on - strand at 2289.177 kb on + strand at 2289.191 kb on + strand at 2289.265 kb on + strand at 2289.285 kb on + strand at 2289.295 kb on + strand at 2289.303 kb on - strand at 2289.303 kb on - strand at 2289.303 kb on - strand at 2289.343 kb on + strand at 2289.406 kb on + strand, within CCNA_02133 at 2289.463 kb on + strand, within CCNA_02133 at 2289.471 kb on - strand, within CCNA_02133 at 2289.491 kb on - strand, within CCNA_02133 at 2289.533 kb on - strand, within CCNA_02133 at 2289.538 kb on + strand, within CCNA_02133 at 2289.538 kb on + strand, within CCNA_02133 at 2289.540 kb on + strand, within CCNA_02133 at 2289.579 kb on + strand, within CCNA_02133 at 2289.615 kb on + strand, within CCNA_02133 at 2289.715 kb on - strand, within CCNA_02133 at 2289.736 kb on + strand, within CCNA_02133 at 2289.771 kb on + strand, within CCNA_02133 at 2289.784 kb on + strand, within CCNA_02133 at 2289.840 kb on + strand, within CCNA_02133 at 2289.873 kb on + strand, within CCNA_02133 at 2289.881 kb on - strand, within CCNA_02133 at 2289.907 kb on - strand, within CCNA_02133 at 2289.928 kb on - strand, within CCNA_02133 at 2289.966 kb on - strand, within CCNA_02133 at 2290.006 kb on - strand, within CCNA_02133 at 2290.083 kb on + strand, within CCNA_02133 at 2290.091 kb on - strand, within CCNA_02133 at 2290.126 kb on - strand, within CCNA_02133 at 2290.128 kb on - strand, within CCNA_02133 at 2290.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,287,161 + CCNA_02131 0.72 -1.2 2,287,166 + CCNA_02131 0.72 -0.1 2,287,169 - CCNA_02131 0.73 +0.2 2,287,186 + CCNA_02131 0.73 +0.2 2,287,186 + CCNA_02131 0.73 -0.3 2,287,229 - CCNA_02131 0.75 -0.8 2,287,244 - CCNA_02131 0.76 -0.4 2,287,287 - CCNA_02131 0.77 -0.6 2,287,343 - CCNA_02131 0.80 +0.3 2,287,407 - CCNA_02131 0.82 -0.6 2,287,489 + CCNA_02131 0.86 +0.7 2,287,557 + CCNA_02131 0.88 -0.5 2,287,562 + CCNA_02131 0.89 +0.0 2,287,562 + CCNA_02131 0.89 -0.7 2,287,565 - CCNA_02131 0.89 -0.7 2,287,600 - -0.4 2,287,625 - -0.3 2,287,634 - +2.5 2,287,747 - +1.0 2,287,770 - -0.8 2,287,780 - +0.1 2,287,811 + -0.7 2,287,849 - -0.1 2,287,891 - -0.9 2,287,911 - -0.1 2,287,944 + +0.8 2,287,956 + -0.2 2,287,956 + -2.0 2,287,956 + -0.2 2,288,002 - -0.5 2,288,004 + +0.6 2,288,012 - -0.1 2,288,012 - +0.0 2,288,017 - +0.6 2,288,056 + -0.6 2,288,056 + +0.9 2,288,056 + +0.2 2,288,064 - +0.8 2,288,064 - -0.2 2,288,064 - +0.7 2,288,064 - -0.3 2,288,064 - +1.2 2,288,140 + -2.3 2,288,148 - -0.3 2,288,219 + -2.5 2,288,297 + CCNA_02132 0.15 -0.6 2,288,385 - CCNA_02132 0.24 +0.3 2,288,499 + CCNA_02132 0.35 +1.6 2,288,502 - CCNA_02132 0.35 +0.3 2,288,548 + CCNA_02132 0.40 -0.8 2,288,635 + CCNA_02132 0.48 -0.6 2,288,730 + CCNA_02132 0.58 +0.3 2,288,753 - CCNA_02132 0.60 +0.7 2,288,787 + CCNA_02132 0.63 -0.5 2,288,787 + CCNA_02132 0.63 +1.5 2,288,822 + CCNA_02132 0.67 -1.4 2,288,833 + CCNA_02132 0.68 +0.4 2,288,887 - CCNA_02132 0.73 +1.5 2,288,887 - CCNA_02132 0.73 +1.2 2,288,888 - CCNA_02132 0.73 +0.0 2,288,936 + CCNA_02132 0.78 +0.7 2,288,941 + CCNA_02132 0.78 +0.2 2,289,071 + +1.9 2,289,072 - -1.0 2,289,092 - +0.5 2,289,177 + +1.3 2,289,191 + -0.1 2,289,265 + +0.9 2,289,285 + -1.5 2,289,295 + -1.3 2,289,303 - +0.9 2,289,303 - -0.1 2,289,303 - +0.2 2,289,343 + -0.6 2,289,406 + CCNA_02133 0.16 +0.9 2,289,463 + CCNA_02133 0.22 +0.6 2,289,471 - CCNA_02133 0.22 +0.5 2,289,491 - CCNA_02133 0.24 +0.6 2,289,533 - CCNA_02133 0.29 +1.1 2,289,538 + CCNA_02133 0.29 -1.0 2,289,538 + CCNA_02133 0.29 +0.9 2,289,540 + CCNA_02133 0.29 -0.3 2,289,579 + CCNA_02133 0.33 +0.6 2,289,615 + CCNA_02133 0.37 +0.9 2,289,715 - CCNA_02133 0.47 +1.2 2,289,736 + CCNA_02133 0.49 -0.3 2,289,771 + CCNA_02133 0.53 +0.6 2,289,784 + CCNA_02133 0.54 -1.2 2,289,840 + CCNA_02133 0.60 -1.1 2,289,873 + CCNA_02133 0.63 -0.3 2,289,881 - CCNA_02133 0.64 +0.5 2,289,907 - CCNA_02133 0.66 +1.1 2,289,928 - CCNA_02133 0.68 +0.7 2,289,966 - CCNA_02133 0.72 +1.6 2,290,006 - CCNA_02133 0.76 -0.7 2,290,083 + CCNA_02133 0.84 -0.7 2,290,091 - CCNA_02133 0.85 +0.8 2,290,126 - CCNA_02133 0.88 -0.5 2,290,128 - CCNA_02133 0.88 +0.5 2,290,157 - +0.5
Or see this region's nucleotide sequence