Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02114

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02112 and CCNA_02113 are separated by 11 nucleotidesCCNA_02113 and CCNA_02114 are separated by 113 nucleotidesCCNA_02114 and CCNA_02115 are separated by 453 nucleotides CCNA_02112: CCNA_02112 - D-cysteine desulfhydrase, at 2,261,538 to 2,262,539 _02112 CCNA_02113: CCNA_02113 - aspartate racemase, at 2,262,551 to 2,263,219 _02113 CCNA_02114: CCNA_02114 - hypothetical protein, at 2,263,333 to 2,263,515 _02114 CCNA_02115: CCNA_02115 - secreted pectate lyase-family protein, at 2,263,969 to 2,265,600 _02115 Position (kb) 2263 2264Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2262.356 kb on + strand, within CCNA_02112at 2262.360 kb on - strand, within CCNA_02112at 2262.364 kb on - strand, within CCNA_02112at 2262.449 kb on + strandat 2262.476 kb on + strandat 2262.541 kb on - strandat 2262.570 kb on + strandat 2262.570 kb on + strandat 2262.577 kb on - strandat 2262.629 kb on + strand, within CCNA_02113at 2262.639 kb on + strand, within CCNA_02113at 2262.639 kb on + strand, within CCNA_02113at 2262.647 kb on - strand, within CCNA_02113at 2262.686 kb on - strand, within CCNA_02113at 2262.709 kb on + strand, within CCNA_02113at 2262.784 kb on + strand, within CCNA_02113at 2262.799 kb on + strand, within CCNA_02113at 2262.799 kb on + strand, within CCNA_02113at 2262.799 kb on + strand, within CCNA_02113at 2262.807 kb on - strand, within CCNA_02113at 2262.807 kb on - strand, within CCNA_02113at 2262.807 kb on - strand, within CCNA_02113at 2262.807 kb on - strand, within CCNA_02113at 2262.807 kb on - strand, within CCNA_02113at 2262.822 kb on + strand, within CCNA_02113at 2262.822 kb on + strand, within CCNA_02113at 2262.822 kb on + strand, within CCNA_02113at 2262.822 kb on + strand, within CCNA_02113at 2262.830 kb on - strand, within CCNA_02113at 2262.830 kb on - strand, within CCNA_02113at 2262.920 kb on - strand, within CCNA_02113at 2262.925 kb on + strand, within CCNA_02113at 2262.963 kb on + strand, within CCNA_02113at 2263.001 kb on + strand, within CCNA_02113at 2263.002 kb on - strand, within CCNA_02113at 2263.002 kb on - strand, within CCNA_02113at 2263.014 kb on - strand, within CCNA_02113at 2263.043 kb on + strand, within CCNA_02113at 2263.120 kb on + strand, within CCNA_02113at 2263.180 kb on - strandat 2263.208 kb on - strandat 2263.208 kb on - strandat 2263.247 kb on + strandat 2263.255 kb on - strandat 2263.255 kb on - strandat 2263.301 kb on + strandat 2263.309 kb on - strandat 2263.314 kb on + strandat 2263.316 kb on + strandat 2263.316 kb on + strandat 2263.381 kb on + strand, within CCNA_02114at 2263.418 kb on + strand, within CCNA_02114at 2263.431 kb on - strand, within CCNA_02114at 2263.487 kb on + strand, within CCNA_02114at 2263.506 kb on - strandat 2263.561 kb on + strandat 2263.679 kb on + strandat 2263.749 kb on + strandat 2263.749 kb on + strandat 2263.749 kb on + strandat 2263.749 kb on + strandat 2263.749 kb on + strandat 2263.749 kb on + strandat 2263.757 kb on - strandat 2263.757 kb on - strandat 2263.757 kb on - strandat 2263.757 kb on - strandat 2263.757 kb on - strandat 2263.757 kb on - strandat 2263.780 kb on + strandat 2263.908 kb on + strandat 2263.908 kb on + strandat 2263.908 kb on + strandat 2263.916 kb on - strandat 2263.937 kb on + strandat 2263.954 kb on + strandat 2263.973 kb on + strandat 2263.979 kb on + strandat 2264.029 kb on + strandat 2264.067 kb on + strandat 2264.105 kb on - strandat 2264.129 kb on - strandat 2264.144 kb on + strand, within CCNA_02115at 2264.190 kb on + strand, within CCNA_02115at 2264.253 kb on - strand, within CCNA_02115at 2264.378 kb on + strand, within CCNA_02115at 2264.386 kb on - strand, within CCNA_02115

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,262,356 + CCNA_02112 0.82 -1.2
2,262,360 - CCNA_02112 0.82 +0.3
2,262,364 - CCNA_02112 0.82 -1.2
2,262,449 + +0.9
2,262,476 + -1.0
2,262,541 - -0.3
2,262,570 + -0.4
2,262,570 + +0.7
2,262,577 - -0.7
2,262,629 + CCNA_02113 0.12 +0.9
2,262,639 + CCNA_02113 0.13 +0.3
2,262,639 + CCNA_02113 0.13 +1.4
2,262,647 - CCNA_02113 0.14 +0.3
2,262,686 - CCNA_02113 0.20 +0.0
2,262,709 + CCNA_02113 0.24 +0.3
2,262,784 + CCNA_02113 0.35 -0.4
2,262,799 + CCNA_02113 0.37 -0.8
2,262,799 + CCNA_02113 0.37 +0.9
2,262,799 + CCNA_02113 0.37 -0.4
2,262,807 - CCNA_02113 0.38 +0.0
2,262,807 - CCNA_02113 0.38 -1.8
2,262,807 - CCNA_02113 0.38 -1.1
2,262,807 - CCNA_02113 0.38 -1.1
2,262,807 - CCNA_02113 0.38 -2.8
2,262,822 + CCNA_02113 0.41 +0.5
2,262,822 + CCNA_02113 0.41 -0.2
2,262,822 + CCNA_02113 0.41 -0.4
2,262,822 + CCNA_02113 0.41 +1.9
2,262,830 - CCNA_02113 0.42 -3.0
2,262,830 - CCNA_02113 0.42 -1.9
2,262,920 - CCNA_02113 0.55 -1.2
2,262,925 + CCNA_02113 0.56 -0.1
2,262,963 + CCNA_02113 0.62 -0.3
2,263,001 + CCNA_02113 0.67 -0.7
2,263,002 - CCNA_02113 0.67 -1.3
2,263,002 - CCNA_02113 0.67 +2.4
2,263,014 - CCNA_02113 0.69 -0.9
2,263,043 + CCNA_02113 0.74 -0.6
2,263,120 + CCNA_02113 0.85 +0.7
2,263,180 - +0.0
2,263,208 - -1.6
2,263,208 - -0.3
2,263,247 + +0.5
2,263,255 - -0.5
2,263,255 - -0.7
2,263,301 + +1.4
2,263,309 - -0.5
2,263,314 + -1.2
2,263,316 + +2.2
2,263,316 + +0.5
2,263,381 + CCNA_02114 0.26 -2.3
2,263,418 + CCNA_02114 0.46 +1.2
2,263,431 - CCNA_02114 0.54 +0.0
2,263,487 + CCNA_02114 0.84 +0.5
2,263,506 - +1.2
2,263,561 + +0.5
2,263,679 + -0.6
2,263,749 + -0.7
2,263,749 + -0.3
2,263,749 + +0.7
2,263,749 + -1.8
2,263,749 + -0.7
2,263,749 + +0.5
2,263,757 - -1.0
2,263,757 - -0.3
2,263,757 - -0.7
2,263,757 - +0.5
2,263,757 - -0.3
2,263,757 - +0.4
2,263,780 + +0.5
2,263,908 + -2.0
2,263,908 + -0.9
2,263,908 + -0.2
2,263,916 - -0.5
2,263,937 + -2.6
2,263,954 + -0.7
2,263,973 + +0.7
2,263,979 + +0.1
2,264,029 + -0.9
2,264,067 + -1.0
2,264,105 - +0.0
2,264,129 - -0.3
2,264,144 + CCNA_02115 0.11 +0.1
2,264,190 + CCNA_02115 0.14 -1.6
2,264,253 - CCNA_02115 0.17 +0.7
2,264,378 + CCNA_02115 0.25 -0.0
2,264,386 - CCNA_02115 0.26 -1.5

Or see this region's nucleotide sequence