Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02112 and CCNA_02113 are separated by 11 nucleotides CCNA_02113 and CCNA_02114 are separated by 113 nucleotides CCNA_02114 and CCNA_02115 are separated by 453 nucleotides
CCNA_02112: CCNA_02112 - D-cysteine desulfhydrase, at 2,261,538 to 2,262,539
_02112
CCNA_02113: CCNA_02113 - aspartate racemase, at 2,262,551 to 2,263,219
_02113
CCNA_02114: CCNA_02114 - hypothetical protein, at 2,263,333 to 2,263,515
_02114
CCNA_02115: CCNA_02115 - secreted pectate lyase-family protein, at 2,263,969 to 2,265,600
_02115
Position (kb)
2263
2264 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2262.356 kb on + strand, within CCNA_02112 at 2262.360 kb on - strand, within CCNA_02112 at 2262.364 kb on - strand, within CCNA_02112 at 2262.449 kb on + strand at 2262.476 kb on + strand at 2262.541 kb on - strand at 2262.570 kb on + strand at 2262.570 kb on + strand at 2262.577 kb on - strand at 2262.629 kb on + strand, within CCNA_02113 at 2262.639 kb on + strand, within CCNA_02113 at 2262.639 kb on + strand, within CCNA_02113 at 2262.647 kb on - strand, within CCNA_02113 at 2262.686 kb on - strand, within CCNA_02113 at 2262.709 kb on + strand, within CCNA_02113 at 2262.784 kb on + strand, within CCNA_02113 at 2262.799 kb on + strand, within CCNA_02113 at 2262.799 kb on + strand, within CCNA_02113 at 2262.799 kb on + strand, within CCNA_02113 at 2262.807 kb on - strand, within CCNA_02113 at 2262.807 kb on - strand, within CCNA_02113 at 2262.807 kb on - strand, within CCNA_02113 at 2262.807 kb on - strand, within CCNA_02113 at 2262.807 kb on - strand, within CCNA_02113 at 2262.822 kb on + strand, within CCNA_02113 at 2262.822 kb on + strand, within CCNA_02113 at 2262.822 kb on + strand, within CCNA_02113 at 2262.822 kb on + strand, within CCNA_02113 at 2262.830 kb on - strand, within CCNA_02113 at 2262.830 kb on - strand, within CCNA_02113 at 2262.920 kb on - strand, within CCNA_02113 at 2262.925 kb on + strand, within CCNA_02113 at 2262.963 kb on + strand, within CCNA_02113 at 2263.001 kb on + strand, within CCNA_02113 at 2263.002 kb on - strand, within CCNA_02113 at 2263.002 kb on - strand, within CCNA_02113 at 2263.014 kb on - strand, within CCNA_02113 at 2263.043 kb on + strand, within CCNA_02113 at 2263.120 kb on + strand, within CCNA_02113 at 2263.180 kb on - strand at 2263.208 kb on - strand at 2263.208 kb on - strand at 2263.247 kb on + strand at 2263.255 kb on - strand at 2263.255 kb on - strand at 2263.301 kb on + strand at 2263.309 kb on - strand at 2263.314 kb on + strand at 2263.316 kb on + strand at 2263.316 kb on + strand at 2263.381 kb on + strand, within CCNA_02114 at 2263.418 kb on + strand, within CCNA_02114 at 2263.431 kb on - strand, within CCNA_02114 at 2263.487 kb on + strand, within CCNA_02114 at 2263.506 kb on - strand at 2263.561 kb on + strand at 2263.679 kb on + strand at 2263.749 kb on + strand at 2263.749 kb on + strand at 2263.749 kb on + strand at 2263.749 kb on + strand at 2263.749 kb on + strand at 2263.749 kb on + strand at 2263.757 kb on - strand at 2263.757 kb on - strand at 2263.757 kb on - strand at 2263.757 kb on - strand at 2263.757 kb on - strand at 2263.757 kb on - strand at 2263.780 kb on + strand at 2263.908 kb on + strand at 2263.908 kb on + strand at 2263.908 kb on + strand at 2263.916 kb on - strand at 2263.937 kb on + strand at 2263.954 kb on + strand at 2263.973 kb on + strand at 2263.979 kb on + strand at 2264.029 kb on + strand at 2264.067 kb on + strand at 2264.105 kb on - strand at 2264.129 kb on - strand at 2264.144 kb on + strand, within CCNA_02115 at 2264.190 kb on + strand, within CCNA_02115 at 2264.253 kb on - strand, within CCNA_02115 at 2264.378 kb on + strand, within CCNA_02115 at 2264.386 kb on - strand, within CCNA_02115
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,262,356 + CCNA_02112 0.82 -1.2 2,262,360 - CCNA_02112 0.82 +0.3 2,262,364 - CCNA_02112 0.82 -1.2 2,262,449 + +0.9 2,262,476 + -1.0 2,262,541 - -0.3 2,262,570 + -0.4 2,262,570 + +0.7 2,262,577 - -0.7 2,262,629 + CCNA_02113 0.12 +0.9 2,262,639 + CCNA_02113 0.13 +0.3 2,262,639 + CCNA_02113 0.13 +1.4 2,262,647 - CCNA_02113 0.14 +0.3 2,262,686 - CCNA_02113 0.20 +0.0 2,262,709 + CCNA_02113 0.24 +0.3 2,262,784 + CCNA_02113 0.35 -0.4 2,262,799 + CCNA_02113 0.37 -0.8 2,262,799 + CCNA_02113 0.37 +0.9 2,262,799 + CCNA_02113 0.37 -0.4 2,262,807 - CCNA_02113 0.38 +0.0 2,262,807 - CCNA_02113 0.38 -1.8 2,262,807 - CCNA_02113 0.38 -1.1 2,262,807 - CCNA_02113 0.38 -1.1 2,262,807 - CCNA_02113 0.38 -2.8 2,262,822 + CCNA_02113 0.41 +0.5 2,262,822 + CCNA_02113 0.41 -0.2 2,262,822 + CCNA_02113 0.41 -0.4 2,262,822 + CCNA_02113 0.41 +1.9 2,262,830 - CCNA_02113 0.42 -3.0 2,262,830 - CCNA_02113 0.42 -1.9 2,262,920 - CCNA_02113 0.55 -1.2 2,262,925 + CCNA_02113 0.56 -0.1 2,262,963 + CCNA_02113 0.62 -0.3 2,263,001 + CCNA_02113 0.67 -0.7 2,263,002 - CCNA_02113 0.67 -1.3 2,263,002 - CCNA_02113 0.67 +2.4 2,263,014 - CCNA_02113 0.69 -0.9 2,263,043 + CCNA_02113 0.74 -0.6 2,263,120 + CCNA_02113 0.85 +0.7 2,263,180 - +0.0 2,263,208 - -1.6 2,263,208 - -0.3 2,263,247 + +0.5 2,263,255 - -0.5 2,263,255 - -0.7 2,263,301 + +1.4 2,263,309 - -0.5 2,263,314 + -1.2 2,263,316 + +2.2 2,263,316 + +0.5 2,263,381 + CCNA_02114 0.26 -2.3 2,263,418 + CCNA_02114 0.46 +1.2 2,263,431 - CCNA_02114 0.54 +0.0 2,263,487 + CCNA_02114 0.84 +0.5 2,263,506 - +1.2 2,263,561 + +0.5 2,263,679 + -0.6 2,263,749 + -0.7 2,263,749 + -0.3 2,263,749 + +0.7 2,263,749 + -1.8 2,263,749 + -0.7 2,263,749 + +0.5 2,263,757 - -1.0 2,263,757 - -0.3 2,263,757 - -0.7 2,263,757 - +0.5 2,263,757 - -0.3 2,263,757 - +0.4 2,263,780 + +0.5 2,263,908 + -2.0 2,263,908 + -0.9 2,263,908 + -0.2 2,263,916 - -0.5 2,263,937 + -2.6 2,263,954 + -0.7 2,263,973 + +0.7 2,263,979 + +0.1 2,264,029 + -0.9 2,264,067 + -1.0 2,264,105 - +0.0 2,264,129 - -0.3 2,264,144 + CCNA_02115 0.11 +0.1 2,264,190 + CCNA_02115 0.14 -1.6 2,264,253 - CCNA_02115 0.17 +0.7 2,264,378 + CCNA_02115 0.25 -0.0 2,264,386 - CCNA_02115 0.26 -1.5
Or see this region's nucleotide sequence