Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02013

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02012 and CCNA_02013 overlap by 1 nucleotidesCCNA_02013 and CCNA_02014 overlap by 4 nucleotidesCCNA_02014 and CCNA_02015 are separated by 1 nucleotides CCNA_02012: CCNA_02012 - metal-dependent hydrolase, at 2,158,098 to 2,159,777 _02012 CCNA_02013: CCNA_02013 - pantothenate kinase/Bvg accessory factor, at 2,159,777 to 2,160,562 _02013 CCNA_02014: CCNA_02014 - Biotin-(acetyl-CoA carboxylase) ligase, at 2,160,559 to 2,161,311 _02014 CCNA_02015: CCNA_02015 - NADH-quinone oxidoreductase chain N, at 2,161,313 to 2,162,773 _02015 Position (kb) 2159 2160 2161Strain fitness (log2 ratio) -1 0 1at 2158.790 kb on - strand, within CCNA_02012at 2158.832 kb on - strand, within CCNA_02012at 2158.942 kb on + strand, within CCNA_02012at 2158.988 kb on - strand, within CCNA_02012at 2159.022 kb on + strand, within CCNA_02012at 2159.022 kb on + strand, within CCNA_02012at 2159.022 kb on + strand, within CCNA_02012at 2159.030 kb on - strand, within CCNA_02012at 2159.030 kb on - strand, within CCNA_02012at 2159.030 kb on - strand, within CCNA_02012at 2159.052 kb on - strand, within CCNA_02012at 2159.052 kb on - strand, within CCNA_02012at 2159.054 kb on - strand, within CCNA_02012at 2159.054 kb on - strand, within CCNA_02012at 2159.109 kb on - strand, within CCNA_02012at 2159.109 kb on - strand, within CCNA_02012at 2159.225 kb on - strand, within CCNA_02012at 2159.268 kb on - strand, within CCNA_02012at 2159.268 kb on - strand, within CCNA_02012at 2159.283 kb on + strand, within CCNA_02012at 2159.283 kb on + strand, within CCNA_02012at 2159.291 kb on - strand, within CCNA_02012at 2159.291 kb on - strand, within CCNA_02012at 2159.400 kb on - strand, within CCNA_02012at 2159.493 kb on + strand, within CCNA_02012at 2159.504 kb on + strand, within CCNA_02012at 2159.521 kb on + strand, within CCNA_02012at 2159.536 kb on - strand, within CCNA_02012at 2159.547 kb on + strand, within CCNA_02012at 2159.702 kb on - strandat 2161.317 kb on - strandat 2161.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,158,790 - CCNA_02012 0.41 +1.0
2,158,832 - CCNA_02012 0.44 +0.4
2,158,942 + CCNA_02012 0.50 +1.5
2,158,988 - CCNA_02012 0.53 -0.2
2,159,022 + CCNA_02012 0.55 -0.7
2,159,022 + CCNA_02012 0.55 +0.1
2,159,022 + CCNA_02012 0.55 -0.6
2,159,030 - CCNA_02012 0.55 -0.6
2,159,030 - CCNA_02012 0.55 +0.0
2,159,030 - CCNA_02012 0.55 -0.3
2,159,052 - CCNA_02012 0.57 -0.7
2,159,052 - CCNA_02012 0.57 +0.0
2,159,054 - CCNA_02012 0.57 -0.5
2,159,054 - CCNA_02012 0.57 +0.2
2,159,109 - CCNA_02012 0.60 +0.2
2,159,109 - CCNA_02012 0.60 -0.4
2,159,225 - CCNA_02012 0.67 +0.2
2,159,268 - CCNA_02012 0.70 +0.4
2,159,268 - CCNA_02012 0.70 +0.1
2,159,283 + CCNA_02012 0.71 -0.2
2,159,283 + CCNA_02012 0.71 +1.0
2,159,291 - CCNA_02012 0.71 +0.9
2,159,291 - CCNA_02012 0.71 +0.6
2,159,400 - CCNA_02012 0.78 +0.8
2,159,493 + CCNA_02012 0.83 +1.0
2,159,504 + CCNA_02012 0.84 -1.5
2,159,521 + CCNA_02012 0.85 -1.4
2,159,536 - CCNA_02012 0.86 -1.5
2,159,547 + CCNA_02012 0.86 -0.6
2,159,702 - -0.1
2,161,317 - +0.5
2,161,321 + -0.3

Or see this region's nucleotide sequence